Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 6.5e-154 547.4 277 100.0
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 9.8e-118 427.2 288 79.9
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 7.1e-108 394.4 288 74.0
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 3.0e-98 362.5 313 65.5
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.4e-95 353.6 313 64.5
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 4.6e-83 312.0 308 55.5
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 7.9e-83 311.2 310 56.5
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 1.1e-81 307.4 321 54.2
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 3.1e-79 299.3 306 53.9
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 9.9e-78 294.3 319 50.8
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.3e-77 293.9 313 52.7
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 3.8e-77 292.4 324 50.9
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 6.4e-77 291.6 290 54.5
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 1.1e-76 290.8 315 50.2
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 1.4e-76 290.4 307 51.5
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.9e-76 290.0 307 52.8
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 5.5e-76 288.5 312 52.6
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 9.3e-76 287.7 319 51.1
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.2e-75 287.3 307 52.4
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 2.7e-75 286.2 307 52.1
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 4.6e-75 285.4 307 51.1
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.3e-74 283.9 338 46.7
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.3e-74 283.9 297 54.2
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 1.8e-74 283.5 307 51.5
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.8e-74 283.5 307 52.1
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 3.9e-74 282.3 307 51.1
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 8.7e-74 281.2 305 50.8
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.5e-73 280.4 307 50.8
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 4.3e-73 278.9 296 52.4
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 4.3e-73 278.9 307 49.2
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.3e-72 277.3 308 51.3
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 2.8e-72 276.2 307 50.5
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 4.8e-72 275.4 307 48.9
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 3.1e-71 272.7 314 51.6
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 4.0e-71 272.3 306 48.0
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 2.6e-70 269.6 307 49.2
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 5.8e-70 268.5 317 49.5
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 5.8e-70 268.5 302 50.3
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.3e-69 267.3 310 49.7
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 2.2e-69 266.5 306 49.0
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 2.9e-69 266.2 309 49.5
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 8.4e-69 264.6 307 49.5
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.9e-68 263.5 306 46.1
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 3.2e-68 262.7 306 47.1
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 4.2e-68 262.3 307 47.2
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 5.5e-68 261.9 307 48.2
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 9.3e-68 261.2 301 49.5
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 9.3e-68 261.2 306 48.7
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 9.3e-68 261.2 247 55.9
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 1.2e-67 260.8 295 48.8
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.2e-67 260.8 307 47.6
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.1e-67 260.0 338 47.3
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 6.0e-67 258.5 306 48.7
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 7.9e-67 258.1 307 47.6
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 3.9e-66 255.8 309 48.2
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 6.7e-66 255.0 288 51.4
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 2.5e-65 253.1 309 47.9
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 3.3e-65 252.7 306 47.1
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 3.3e-65 252.7 314 48.1
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 7.4e-65 251.5 306 49.0
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 1.3e-64 250.8 307 45.9
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.6e-64 250.4 319 47.0
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 2.1e-64 250.0 307 46.6
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 3.1e-63 246.1 306 46.1
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 4.5e-62 242.3 306 45.8
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 4.5e-62 242.3 308 48.4
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 7.6e-62 241.5 308 46.4
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 7.6e-62 241.5 321 43.9
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 1.0e-61 241.1 322 44.1
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.3e-61 240.7 306 45.8
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.3e-61 240.7 306 45.8
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.7e-61 240.4 308 46.4
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 2.2e-61 240.0 306 46.4
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 3.2e-60 236.1 307 45.3
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 4.2e-60 235.7 314 46.2
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 4.2e-60 235.7 302 45.7
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 7.2e-60 235.0 301 45.5
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 7.2e-60 235.0 260 50.4
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 4.6e-59 232.3 327 43.4
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 1.0e-58 231.1 332 42.8
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 2.3e-58 229.9 302 44.7
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.8e-56 223.0 258 50.0
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 6.3e-56 221.9 137 85.4
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 6.3e-56 221.9 334 44.0
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.4e-55 219.9 307 40.4
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 5.3e-55 218.8 137 85.4
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 4.5e-54 215.7 368 40.2
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 5.0e-53 212.2 330 39.7
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 1.3e-48 197.6 319 40.1
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 2.8e-48 196.4 249 48.2
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 7.7e-46 188.3 137 71.5
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 2.9e-45 186.4 137 70.1
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 3.8e-45 186.0 137 71.5
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 3.8e-45 186.0 311 37.3
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 8.5e-45 184.9 137 67.9
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 1.9e-44 183.7 103 86.4
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 4.2e-44 182.6 319 35.1
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 1.2e-43 181.0 137 68.6
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 4.7e-43 179.1 137 68.6
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 5.9e-38 162.2 306 33.7
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 1.0e-37 161.4 269 40.9
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 1.7e-37 160.6 145 60.0
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.2e-35 154.5 111 68.5
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 2.3e-34 150.2 101 73.3
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 4.4e-33 146.0 263 35.7
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 2.7e-30 136.7 306 33.0
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 1.9e-28 130.6 103 59.2
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 3.6e-27 126.3 104 56.7
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 2.3e-26 123.6 107 56.1
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 2.0e-22 110.5 179 38.5
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 9.5e-20 101.7 89 61.8
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 4.7e-19 99.4 318 27.4
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 8.0e-19 98.6 90 51.1
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 8.0e-19 98.6 60 78.3
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 3.4e-17 93.2 296 26.0
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 5.7e-17 92.4 211 32.7
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 5.9e-14 82.4 76 56.6
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 3.8e-13 79.7 86 48.8
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 7.3e-12 75.5 83 55.4
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 1.2e-11 74.7 308 24.4
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 5.7e-09 65.9 145 35.9
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 9.8e-09 65.1 207 29.0
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.8e-07 60.8 109 39.4
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.8e-07 60.8 109 39.4
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.2e-07 60.1 71 45.1
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 4.1e-07 59.7 109 41.3
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 2.0e-06 57.4 109 38.5
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 2.7e-06 57.0 109 39.4
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 3.5e-06 56.6 109 37.6


User provided reference genes

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