Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.5e-255 883.6 473 100.0
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.4e-211 738.4 474 82.9
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.5e-195 684.9 455 81.3
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.0e-188 660.6 473 77.4
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.1e-184 649.4 468 77.1
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 2.1e-104 383.6 462 52.4
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 9.2e-100 368.2 458 49.8
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.1e-91 340.5 206 89.8
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.6e-88 329.7 322 57.5
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 1.2e-86 324.7 326 57.4
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 1.4e-84 317.8 323 56.7
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 4.5e-78 296.2 317 57.1
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.7e-69 267.7 319 54.2
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.1e-65 255.0 365 43.3
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 3.3e-65 253.4 236 59.3
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.7e-61 241.1 238 60.1
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 4.2e-60 236.5 225 59.6
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 8.8e-58 228.8 330 45.8
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 7.4e-57 225.7 329 44.4
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.1e-52 211.8 329 45.0
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 1.1e-49 201.8 554 30.9
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 3.5e-46 190.3 326 41.4
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 2.2e-45 187.6 309 40.5
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 1.4e-42 178.3 324 37.0
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 3.0e-42 177.2 329 36.5
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.0e-42 177.2 171 59.1
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 5.2e-42 176.4 322 37.6
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.1e-41 175.3 324 38.9
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 1.1e-41 175.3 325 38.5
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 5.7e-41 172.9 310 40.3
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 3.7e-40 170.2 323 37.2
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.2e-40 169.1 145 68.3
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 2.4e-39 167.5 309 38.5
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 5.3e-39 166.4 326 38.0
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 9.1e-39 165.6 322 37.3
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 1.6e-38 164.9 340 37.4
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 1.6e-38 164.9 314 37.3
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.6e-38 164.1 314 37.6
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 4.5e-38 163.3 331 37.5
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.0e-37 162.2 333 39.0
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 1.3e-37 161.8 316 37.3
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 1.7e-37 161.4 313 36.4
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 2.2e-37 161.0 340 36.5
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.2e-37 161.0 321 36.4
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 8.5e-37 159.1 336 34.5
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 8.5e-37 159.1 313 38.3
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.1e-36 158.7 321 37.4
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 1.5e-36 158.3 320 37.8
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.2e-36 157.1 336 34.2
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 9.4e-36 155.6 328 32.3
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 1.2e-35 155.2 330 37.0
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.7e-35 154.1 150 58.7
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 3.6e-35 153.7 330 36.1
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.8e-34 151.4 324 36.4
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 4.0e-34 150.2 317 37.9
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 8.8e-34 149.1 329 33.7
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 2.0e-33 147.9 331 35.0
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.0e-33 147.9 324 34.9
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 3.3e-33 147.1 229 43.2
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 3.3e-33 147.1 332 36.4
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 3.3e-33 147.1 332 36.4
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 4.4e-33 146.7 327 35.8
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.3e-32 145.2 320 37.2
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.7e-32 144.8 318 36.5
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 2.2e-32 144.4 309 35.9
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.2e-32 144.4 326 35.0
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 3.7e-32 143.7 333 33.0
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.7e-32 143.7 326 35.3
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.1e-31 142.1 317 37.2
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 1.8e-31 141.4 340 32.9
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 3.1e-31 140.6 299 34.1
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 3.1e-31 140.6 302 37.1
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 4.1e-31 140.2 316 34.8
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 4.1e-31 140.2 288 36.1
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 5.3e-31 139.8 337 35.3
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 5.3e-31 139.8 326 34.4
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 9.1e-31 139.0 330 35.2
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 1.6e-30 138.3 317 36.3
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 2.0e-30 137.9 343 32.4
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 2.0e-30 137.9 316 34.8
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.5e-30 137.1 325 35.1
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 4.5e-30 136.7 332 32.8
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 7.7e-30 136.0 337 33.8
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 1.0e-29 135.6 320 34.1
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 1.3e-29 135.2 331 33.5
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.3e-29 135.2 325 34.5
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 1.3e-29 135.2 343 31.5
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 3.8e-29 133.7 257 37.4
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.0e-29 133.3 324 31.8
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.1e-28 132.1 315 36.2
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 1.9e-28 131.3 312 34.9
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 3.2e-28 130.6 311 34.4
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 4.2e-28 130.2 328 35.7
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 5.5e-28 129.8 340 30.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 7.2e-28 129.4 333 30.6
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 7.2e-28 129.4 339 31.6
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 9.4e-28 129.0 319 34.8
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.6e-27 128.3 325 33.2
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 2.1e-27 127.9 337 31.2
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 2.1e-27 127.9 322 32.9
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.1e-27 127.9 317 33.8
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 6.1e-27 126.3 336 30.4
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 6.1e-27 126.3 336 30.4
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.4e-26 125.2 331 30.5
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.3e-26 124.4 340 32.9
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 3.0e-26 124.0 328 32.6
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 3.0e-26 124.0 347 30.8
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 5.2e-26 123.2 335 30.7
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 5.2e-26 123.2 320 34.4
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 1.2e-25 122.1 208 36.1
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 1.2e-25 122.1 312 32.4
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 3.4e-25 120.6 334 30.2
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.4e-25 120.6 330 31.5
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 7.5e-25 119.4 278 36.3
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 9.8e-25 119.0 329 29.8
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 1.7e-24 118.2 331 32.9
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 2.2e-24 117.9 334 29.9
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.8e-24 117.5 319 32.3
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 2.8e-24 117.5 283 36.4
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.1e-23 115.5 327 32.1
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 1.4e-23 115.2 338 30.8
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 2.0e-22 111.3 323 30.7
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 2.9e-21 107.5 312 31.7
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.9e-21 107.5 287 32.8
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 5.0e-21 106.7 186 41.9
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.6e-21 105.9 225 39.6
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.1e-20 105.5 333 31.2
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 1.9e-20 104.8 327 31.2
Nitab4.5_0004471g0140 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.3e-20 104.0 89 65.2
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 9.5e-20 102.4 316 28.8
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.8e-19 100.9 314 30.3
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 4.7e-19 100.1 326 29.8
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.7e-19 100.1 314 30.3
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 6.1e-19 99.8 199 41.2
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.8e-18 98.2 244 31.6
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 4.0e-18 97.1 157 39.5
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.0e-18 97.1 328 26.5
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 8.9e-18 95.9 155 36.1
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 4.4e-17 93.6 332 29.8
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 4.4e-17 93.6 167 35.3
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 9.8e-17 92.4 290 28.3
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 1.7e-16 91.7 310 30.0
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 3.7e-16 90.5 313 30.0
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 3.7e-16 90.5 314 31.2
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 1.4e-15 88.6 129 44.2
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 4.1e-15 87.0 217 30.0
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 5.9e-14 83.2 197 34.0
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 7.8e-14 82.8 313 29.4
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 7.8e-14 82.8 159 37.7
Nitab4.5_0008978g0020 Nicotiana tabacum HOM05D003448 ORTHO05D025922 5.0e-13 80.1 72 59.7
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 5.0e-13 80.1 313 27.5
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.1e-12 79.0 233 30.0
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 1.5e-12 78.6 191 34.6
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 2.5e-12 77.8 180 31.1
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.5e-12 77.8 299 27.8
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 7.3e-12 76.3 305 28.9
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 6.1e-11 73.2 182 35.2
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 6.1e-11 73.2 226 31.4
PGSC0003DMG400028337 Solanum tuberosum HOM05D003448 ORTHO05D004028 6.1e-11 73.2 90 43.3
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 8.9e-10 69.3 132 34.1
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 8.9e-10 69.3 132 34.1
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.2e-09 68.9 308 26.9
Pp3c6_23080 Physcomitrium patens HOM05D001062 ORTHO05D000884 5.8e-09 66.6 255 25.1
MD12G1099700 Malus domestica HOM05D003448 ORTHO05D004028 7.5e-09 66.2 125 32.0
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 4.9e-08 63.5 226 28.8
Pp3c5_10650 Physcomitrium patens HOM05D001062 ORTHO05D000884 6.4e-08 63.2 260 25.0
Sopen05g007630 Solanum pennellii HOM05D025680 ORTHO05D025922 8.3e-08 62.8 62 59.7
Nitab4.5_0005448g0040 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.9e-07 61.6 125 36.0
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 9.2e-07 59.3 306 27.8
Zm00001eb408540 Zea mays HOM05D003448 ORTHO05D004028 1.2e-06 58.9 219 30.6
Os12g0257500 Oryza sativa ssp. japonica HOM05D003448 ORTHO05D004028 1.6e-06 58.5 345 27.0
CAN.G964.17 Capsicum annuum HOM05D000002 ORTHO05D000001 4.6e-06 57.0 70 51.4
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 7.8e-06 56.2 125 31.2
TPR.G34075 Trifolium pratense HOM05D003448 ORTHO05D004028 7.8e-06 56.2 126 32.5


User provided reference genes

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