Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 0.0e+00 1261.5 686 100.0
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.0e-269 931.4 648 82.9
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.7e-254 881.3 650 76.0
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.3e-248 862.4 647 75.4
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.4e-211 738.0 474 82.9
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 6.3e-158 562.0 632 54.7
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 8.9e-144 515.0 632 52.2
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.7e-89 333.6 327 59.3
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 3.1e-88 330.5 331 58.9
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 5.8e-87 326.2 329 58.4
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 1.0e-75 288.9 294 58.2
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.8e-73 280.0 207 73.9
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.5e-66 258.5 396 43.9
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 9.7e-66 255.8 304 54.6
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 4.1e-64 250.4 734 31.7
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 5.9e-63 246.5 225 60.4
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.1e-61 242.3 237 60.8
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 2.0e-58 231.5 244 54.1
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 2.6e-55 221.1 334 44.6
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 4.2e-53 213.8 333 43.5
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.2e-53 213.0 340 45.9
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 1.6e-44 185.3 332 41.3
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.4e-42 177.2 433 35.3
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.6e-39 168.7 322 39.8
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 2.7e-39 167.9 326 37.1
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 7.7e-39 166.4 171 55.6
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 3.8e-38 164.1 340 35.3
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.5e-37 162.2 294 38.4
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 1.9e-37 161.8 291 38.5
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 4.2e-37 160.6 330 37.0
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 5.5e-37 160.2 150 59.3
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 9.5e-37 159.5 311 37.0
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 1.6e-36 158.7 312 37.2
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 2.1e-36 158.3 324 37.0
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.0e-35 156.0 335 39.7
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.4e-35 155.6 319 36.4
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.4e-35 155.6 322 37.6
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 1.4e-35 155.6 328 36.3
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 1.8e-35 155.2 295 38.0
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 5.2e-35 153.7 322 35.7
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 6.8e-35 153.3 331 37.5
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-34 152.1 327 37.3
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 1.5e-34 152.1 336 37.5
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 4.4e-34 150.6 334 33.2
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 5.7e-34 150.2 320 38.1
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 5.7e-34 150.2 321 38.9
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 7.5e-34 149.8 327 36.4
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 3.7e-33 147.5 354 34.2
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 6.3e-33 146.7 289 38.1
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 6.3e-33 146.7 314 36.6
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 8.3e-33 146.4 336 34.5
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 8.3e-33 146.4 329 35.3
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 8.3e-33 146.4 256 37.9
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 1.8e-32 145.2 336 35.4
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.4e-32 144.8 315 36.8
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.1e-32 144.4 354 33.9
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 5.4e-32 143.7 328 36.6
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 7.0e-32 143.3 328 36.3
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 9.2e-32 142.9 352 32.7
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 2.0e-31 141.7 334 37.1
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 2.0e-31 141.7 334 37.1
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 2.0e-31 141.7 345 32.8
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.5e-31 140.6 328 34.8
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 5.9e-31 140.2 225 42.2
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 1.7e-30 138.7 234 40.2
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 2.3e-30 138.3 299 37.8
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 2.9e-30 137.9 341 33.4
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.9e-30 137.9 334 32.3
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 6.6e-30 136.7 300 33.7
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 8.6e-30 136.3 333 35.1
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 8.6e-30 136.3 321 34.3
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 1.5e-29 135.6 313 34.5
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.3e-29 134.4 319 34.8
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 3.3e-29 134.4 320 36.9
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 9.5e-29 132.9 266 36.1
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 2.1e-28 131.7 338 32.0
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.1e-28 131.7 331 34.7
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.1e-28 131.7 319 36.1
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 4.7e-28 130.6 343 33.8
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 8.0e-28 129.8 331 34.1
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 4.0e-27 127.5 355 31.5
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.2e-26 125.9 330 35.2
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.5e-26 125.6 335 34.3
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-26 125.6 314 33.4
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 1.5e-26 125.6 307 34.9
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.6e-26 124.8 329 33.1
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 4.4e-26 124.0 320 33.1
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.4e-26 124.0 296 31.8
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 7.5e-26 123.2 336 33.0
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 7.5e-26 123.2 321 35.5
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 2.2e-25 121.7 347 30.0
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.9e-25 121.3 357 32.8
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 1.9e-24 118.6 294 30.6
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 1.9e-24 118.6 349 30.4
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 2.4e-24 118.2 314 31.5
Nitab4.5_0004471g0140 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.4e-24 118.2 88 72.7
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 4.1e-24 117.5 347 31.1
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 5.4e-24 117.1 289 34.9
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 7.0e-24 116.7 286 32.2
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 7.0e-24 116.7 294 35.0
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 9.2e-24 116.3 345 31.3
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.6e-23 115.5 225 41.8
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 2.0e-23 115.2 349 30.9
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 3.5e-23 114.4 325 34.2
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 7.8e-23 113.2 296 32.1
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 7.8e-23 113.2 317 30.0
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 7.8e-23 113.2 201 35.3
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 7.8e-23 113.2 243 35.8
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 1.0e-22 112.8 318 33.6
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 5.0e-22 110.5 343 30.0
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 1.1e-21 109.4 333 30.3
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-21 109.0 300 31.0
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.5e-21 109.0 181 40.9
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.9e-21 108.6 331 32.6
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 3.3e-21 107.8 302 30.5
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 3.3e-21 107.8 302 30.5
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 3.3e-21 107.8 302 30.5
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 5.6e-21 107.1 316 33.2
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 9.5e-21 106.3 319 33.5
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.6e-20 104.4 323 30.7
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 4.7e-20 104.0 311 30.2
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 6.2e-20 103.6 323 30.3
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 8.0e-20 103.2 300 30.7
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 8.0e-20 103.2 300 30.7
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.4e-19 102.4 333 30.0
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 2.3e-19 101.7 194 39.2
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 5.2e-19 100.5 298 33.9
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 8.9e-19 99.8 311 33.4
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 2.0e-18 98.6 306 30.1
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 4.4e-18 97.4 155 38.7
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 2.9e-17 94.7 299 30.1
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.9e-17 94.7 299 29.4
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.4e-17 93.6 332 29.2
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.1e-16 92.8 321 29.9
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 5.4e-16 90.5 293 30.0
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 9.2e-16 89.7 287 29.3
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 1.2e-15 89.4 327 29.1
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 1.2e-15 89.4 304 30.3
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 1.2e-15 89.4 231 32.9
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 2.1e-15 88.6 332 30.1
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 6.0e-15 87.0 299 35.8
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 1.0e-14 86.3 175 37.1
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.3e-14 85.1 221 32.6
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 3.0e-14 84.7 141 39.0
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 5.1e-14 84.0 296 30.1
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 3.3e-13 81.3 159 35.8
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 4.3e-13 80.9 225 31.1
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 5.6e-13 80.5 216 30.1
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 5.6e-13 80.5 314 32.2
Nitab4.5_0008978g0020 Nicotiana tabacum HOM05D003448 ORTHO05D025922 9.5e-13 79.7 77 57.1
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 3.6e-12 77.8 186 40.9
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 6.2e-12 77.0 290 35.5
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 1.4e-11 75.9 118 44.1
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 1.5e-10 72.4 139 34.5
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 2.6e-10 71.6 242 31.4
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 1.7e-09 68.9 295 27.8
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 2.9e-09 68.2 224 36.2
MD12G1099700 Malus domestica HOM05D003448 ORTHO05D004028 6.4e-09 67.0 125 32.8
PGSC0003DMG400028337 Solanum tuberosum HOM05D003448 ORTHO05D004028 6.4e-09 67.0 71 50.7
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 9.2e-08 63.2 280 28.6
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 1.2e-07 62.8 147 29.9
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 1.2e-07 62.8 235 29.8
CAN.G964.17 Capsicum annuum HOM05D000002 ORTHO05D000001 6.0e-07 60.5 70 58.6
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 6.0e-07 60.5 144 33.3
Sopen05g007630 Solanum pennellii HOM05D025680 ORTHO05D025922 1.0e-06 59.7 76 50.0
MSTRG.734 Avicennia marina HOM05D003448 ORTHO05D004028 1.3e-06 59.3 143 35.0
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 6.6e-06 57.0 284 25.4
TPR.G34075 Trifolium pratense HOM05D003448 ORTHO05D004028 8.6e-06 56.6 126 32.5


User provided reference genes

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