Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.7e-178 628.6 331 100.0
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.9e-67 260.4 396 43.9
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.6e-66 256.1 365 43.3
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.1e-62 243.0 136 86.8
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.1e-59 234.6 408 41.7
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.5e-56 224.2 409 39.1
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.4e-54 217.6 134 80.6
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 1.6e-45 187.6 326 39.3
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 1.9e-38 164.1 374 35.0
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 3.0e-36 156.8 141 57.4
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 3.9e-36 156.4 138 61.6
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 4.4e-32 142.9 138 58.7
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 1.1e-30 138.3 138 56.5
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 3.9e-28 129.8 135 52.6
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 8.6e-28 128.6 135 52.6
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.5e-27 127.1 135 53.3
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 9.9e-24 115.2 130 50.8
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 8.4e-23 112.1 133 51.1
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 2.1e-21 107.5 136 44.9
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 1.3e-20 104.8 135 42.2
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 3.0e-20 103.6 137 43.8
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 5.1e-20 102.8 141 42.6
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 5.6e-19 99.4 135 43.7
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.2e-18 98.2 136 41.9
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 4.7e-18 96.3 135 37.8
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 4.7e-18 96.3 137 41.6
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.4e-17 94.0 140 41.4
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 2.4e-17 94.0 143 41.3
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 3.1e-17 93.6 134 39.6
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 4.0e-17 93.2 134 38.8
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 4.0e-17 93.2 134 38.8
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 5.2e-17 92.8 68 63.2
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 6.9e-17 92.4 138 39.1
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 6.9e-17 92.4 135 34.1
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.5e-16 91.3 136 41.2
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 1.5e-16 91.3 135 39.3
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 2.0e-16 90.9 147 38.1
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 2.6e-16 90.5 135 34.1
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 3.4e-16 90.1 138 39.1
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 4.4e-16 89.7 135 39.3
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 5.8e-16 89.4 134 40.3
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 7.6e-16 89.0 132 34.8
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 7.6e-16 89.0 136 38.2
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 7.6e-16 89.0 131 42.7
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 7.6e-16 89.0 137 40.9
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 7.6e-16 89.0 135 41.5
Sopen05g007630 Solanum pennellii HOM05D025680 ORTHO05D025922 9.9e-16 88.6 144 41.7
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 2.9e-15 87.0 134 38.8
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 2.9e-15 87.0 135 37.8
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 2.9e-15 87.0 139 36.7
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 2.9e-15 87.0 135 38.5
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 3.8e-15 86.7 138 42.0
Nitab4.5_0008978g0020 Nicotiana tabacum HOM05D003448 ORTHO05D025922 4.9e-15 86.3 74 59.5
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 6.4e-15 85.9 135 37.8
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.1e-14 85.1 136 39.0
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 1.1e-14 85.1 133 35.3
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.1e-14 85.1 135 37.0
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.1e-14 85.1 135 37.0
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.1e-14 85.1 138 40.6
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.1e-14 85.1 129 39.5
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 1.4e-14 84.7 135 39.3
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 1.9e-14 84.3 131 38.2
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 1.9e-14 84.3 136 38.2
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 3.2e-14 83.6 135 34.8
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 5.4e-14 82.8 108 50.9
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 7.1e-14 82.4 138 39.1
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 9.3e-14 82.0 141 35.5
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 1.2e-13 81.6 144 34.7
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 1.6e-13 81.3 134 38.8
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.6e-13 81.3 105 50.5
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.1e-13 80.9 132 37.9
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.1e-13 80.9 171 32.7
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.7e-13 80.5 137 35.8
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.5e-13 80.1 135 34.8
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 4.6e-13 79.7 139 37.4
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 7.8e-13 79.0 133 37.6
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 7.8e-13 79.0 134 38.8
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 1.0e-12 78.6 134 35.8
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.3e-12 78.2 139 36.0
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.7e-12 77.8 132 37.1
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 1.7e-12 77.8 137 35.8
PGSC0003DMG400028337 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.7e-12 77.8 95 46.3
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 3.0e-12 77.0 140 34.3
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 3.0e-12 77.0 135 37.0
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 3.9e-12 76.6 137 36.5
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 6.6e-12 75.9 110 40.9
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 6.6e-12 75.9 128 35.9
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 8.7e-12 75.5 139 35.3
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.9e-11 74.3 136 36.8
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.3e-11 73.6 135 34.8
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 4.3e-11 73.2 135 34.1
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 9.6e-11 72.0 134 34.3
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 9.6e-11 72.0 131 33.6
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 9.6e-11 72.0 135 37.8
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 9.6e-11 72.0 134 35.8
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 9.6e-11 72.0 135 34.8
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.3e-10 71.6 131 36.6
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.6e-10 71.2 135 31.1
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.1e-10 70.9 137 29.9
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.8e-10 70.5 138 33.3
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 4.8e-10 69.7 143 33.6
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 4.8e-10 69.7 134 34.3
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 4.8e-10 69.7 134 33.6
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 4.8e-10 69.7 135 37.8
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 6.2e-10 69.3 135 34.8
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 6.2e-10 69.3 135 34.8
CAN.G964.17 Capsicum annuum HOM05D000002 ORTHO05D000001 8.1e-10 68.9 70 58.6
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 1.1e-09 68.6 127 35.4
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 3.1e-09 67.0 131 32.8
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 3.1e-09 67.0 137 34.3
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 4.0e-09 66.6 135 36.3
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 5.3e-09 66.2 135 31.1
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 5.3e-09 66.2 135 31.1
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 5.3e-09 66.2 132 36.4
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 5.3e-09 66.2 131 35.9
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 6.9e-09 65.9 134 30.6
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 9.0e-09 65.5 136 30.9
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 9.0e-09 65.5 131 34.4
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 1.2e-08 65.1 131 32.8
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.2e-08 65.1 131 32.8
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 1.2e-08 65.1 131 32.1
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 1.2e-08 65.1 131 32.8
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 1.2e-08 65.1 131 32.8
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 1.2e-08 65.1 131 32.1
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.0e-08 64.3 132 34.8
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 2.6e-08 63.9 131 32.1
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 2.6e-08 63.9 134 34.3
Zm00001eb408540 Zea mays HOM05D003448 ORTHO05D004028 2.6e-08 63.9 140 34.3
PGSC0003DMG400028390 Solanum tuberosum HOM05D025680 ORTHO05D025922 7.6e-08 62.4 63 50.8
Os12g0257500 Oryza sativa ssp. japonica HOM05D003448 ORTHO05D004028 9.9e-08 62.0 159 32.7
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 1.3e-07 61.6 137 29.2
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 1.3e-07 61.6 136 31.6
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 1.7e-07 61.2 148 30.4
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 2.2e-07 60.8 145 26.2
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.2e-07 60.8 73 41.1
Nitab4.5_0005448g0040 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.8e-07 60.1 125 36.8
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 6.4e-07 59.3 136 30.1
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 1.1e-06 58.5 129 32.6
PGSC0003DMG400000263 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.1e-06 58.5 118 34.7
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 1.9e-06 57.8 140 32.9
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 4.2e-06 56.6 121 34.7
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 5.4e-06 56.2 106 37.7
TAR629G0321 Trochodendron aralioides HOM05D003448 ORTHO05D004028 7.1e-06 55.8 100 39.0
FAN17G1640 Fragaria x ananassa HOM05D003448 ORTHO05D004028 9.3e-06 55.5 107 33.6
FAN22G1572 Fragaria x ananassa HOM05D003448 ORTHO05D004028 9.3e-06 55.5 107 33.6


User provided reference genes

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