Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.6e-103 379.4 183 100.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.1e-69 266.9 169 77.5
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.2e-67 258.1 169 77.5
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 5.2e-67 258.1 169 77.5
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 3.2e-56 222.2 167 65.9
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.8e-55 217.6 151 72.8
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.0e-54 217.2 168 65.5
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.7e-54 216.5 167 65.3
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.0e-54 215.7 167 65.9
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 8.6e-54 214.2 167 64.1
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.9e-53 213.0 169 60.9
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 2.5e-53 212.6 167 62.9
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.6e-53 211.5 167 63.5
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 9.5e-53 210.7 170 62.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 9.5e-53 210.7 167 64.1
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.1e-51 207.2 159 63.5
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.9e-49 199.1 170 58.8
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 5.4e-48 194.9 153 63.4
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.6e-47 193.4 169 56.8
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.6e-47 191.8 167 58.1
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 7.8e-47 191.0 169 56.8
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.7e-46 189.9 169 55.0
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.7e-46 189.9 169 58.6
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.7e-46 189.9 171 59.1
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.0e-46 189.1 169 56.8
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 3.0e-46 189.1 169 53.8
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.5e-45 186.0 170 54.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.3e-45 185.7 165 57.6
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 4.3e-45 185.3 169 54.4
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 7.3e-45 184.5 167 55.1
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 2.1e-44 183.0 163 54.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 8.1e-44 181.0 169 54.4
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 5.2e-43 178.3 174 56.9
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.2e-43 178.3 177 52.5
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.2e-42 177.2 177 52.0
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.5e-42 176.8 175 51.4
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 2.6e-42 176.0 177 52.0
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.6e-42 176.0 177 52.0
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.6e-42 176.0 177 52.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 4.4e-42 175.3 170 53.5
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 5.8e-42 174.9 168 55.4
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 5.8e-42 174.9 177 52.0
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.3e-41 173.7 167 52.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.7e-41 173.3 169 51.5
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.9e-41 172.6 163 55.8
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 3.8e-41 172.2 167 53.9
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 6.4e-41 171.4 169 55.0
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.4e-41 171.4 162 55.6
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 8.4e-41 171.0 160 54.4
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.4e-40 170.2 169 54.4
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.4e-40 170.2 167 53.9
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.9e-40 169.9 168 54.2
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 5.4e-40 168.3 165 51.5
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 9.3e-40 167.5 169 53.3
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.3e-40 167.5 165 50.3
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.6e-39 166.8 163 54.6
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.7e-39 166.0 168 51.8
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 3.5e-39 165.6 169 51.5
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 3.5e-39 165.6 169 49.1
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 4.6e-39 165.2 169 51.5
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 6.0e-39 164.9 169 51.5
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 6.0e-39 164.9 169 50.3
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.0e-38 164.1 170 49.4
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 6.6e-38 161.4 167 50.9
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 8.7e-38 161.0 160 50.6
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 8.7e-38 161.0 169 50.9
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.5e-37 160.2 169 50.3
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.5e-37 159.5 168 50.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 5.6e-37 158.3 162 53.7
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 2.8e-36 156.0 167 47.9
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.8e-36 156.0 165 49.1
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.8e-36 156.0 167 48.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 2.8e-36 156.0 170 49.4
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 4.8e-36 155.2 169 47.9
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 6.2e-36 154.8 167 47.3
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.1e-35 154.1 168 46.4
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 2.4e-35 152.9 179 46.4
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 3.1e-35 152.5 156 53.8
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 4.0e-35 152.1 173 50.3
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 4.0e-35 152.1 168 51.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 4.0e-35 152.1 167 46.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.3e-35 151.8 170 48.2
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 9.0e-35 151.0 167 50.3
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.5e-34 150.2 143 55.2
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.5e-34 150.2 165 44.8
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.0e-34 149.8 167 46.1
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 2.0e-34 149.8 148 52.7
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 2.6e-34 149.4 167 46.1
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-34 149.1 168 47.0
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 5.8e-34 148.3 156 50.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 9.9e-34 147.5 167 44.9
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.7e-33 146.7 151 50.3
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.7e-33 146.7 165 44.8
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 4.9e-33 145.2 167 45.5
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.4e-32 143.7 161 47.8
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.4e-32 143.7 162 46.3
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.4e-32 142.9 161 46.6
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.4e-32 142.9 152 51.3
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 3.2e-32 142.5 163 43.6
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 3.2e-32 142.5 163 43.6
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 3.2e-32 142.5 163 43.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.2e-32 142.5 163 44.8
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 3.2e-32 142.5 178 48.3
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.2e-32 142.1 163 44.2
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 5.4e-32 141.7 163 43.6
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.4e-32 141.7 177 44.6
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.2e-31 140.6 162 44.4
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.6e-31 140.2 186 42.5
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.6e-31 140.2 163 45.4
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.7e-31 139.4 165 45.5
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.0e-31 138.3 169 44.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 7.9e-31 137.9 163 46.0
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 7.9e-31 137.9 161 46.6
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.3e-30 137.1 163 46.0
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.8e-30 136.7 145 53.8
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 3.0e-30 136.0 165 45.5
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 3.0e-30 136.0 165 45.5
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 2.5e-29 132.9 161 47.2
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.3e-29 132.5 166 42.8
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 4.3e-29 132.1 164 44.5
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 9.6e-29 131.0 163 43.6
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 2.8e-28 129.4 164 44.5
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 3.7e-28 129.0 165 43.6
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 6.2e-28 128.3 169 45.6
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 6.9e-27 124.8 163 42.9
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 4.5e-26 122.1 162 40.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 4.2e-24 115.5 157 40.8
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 4.6e-23 112.1 155 43.2
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.6e-23 112.1 134 50.0
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 7.9e-23 111.3 155 42.6
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.7e-22 108.2 146 43.8
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.1e-19 100.9 146 39.7
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.5e-18 97.1 146 37.7
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 3.8e-17 92.4 142 38.0
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.1e-16 90.9 76 56.6
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.5e-16 89.7 172 33.7
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.5e-16 89.7 120 50.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 4.2e-16 89.0 147 43.5
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.2e-15 87.4 69 60.9
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.1e-14 82.0 162 34.6
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 7.4e-13 78.2 157 35.0
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.8e-11 73.6 116 40.5
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-11 73.6 150 33.3
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.2e-10 70.9 68 45.6
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.3e-09 67.4 76 46.1
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 7.2e-08 61.6 88 40.9
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 9.4e-08 61.2 68 44.1
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.7e-07 59.7 70 42.9
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 4.6e-07 58.9 68 50.0


User provided reference genes

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