Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.1e-230 800.4 398 100.0
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 1.1e-202 709.9 405 87.4
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 1.4e-202 709.5 405 86.9
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.9e-202 709.1 405 86.9
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 2.1e-201 705.7 391 89.3
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 3.9e-192 674.9 396 84.1
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.4e-189 666.4 405 82.7
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.6e-185 652.9 403 80.4
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 1.6e-185 652.9 405 79.5
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 3.9e-184 648.3 414 77.5
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 3.9e-184 648.3 410 77.8
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 5.1e-184 647.9 393 80.7
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 6.6e-184 647.5 409 78.0
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 4.3e-183 644.8 410 78.5
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 5.6e-183 644.4 424 75.7
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 9.6e-183 643.7 403 78.4
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 6.2e-182 641.0 391 81.8
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 8.1e-182 640.6 405 76.8
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 8.1e-182 640.6 401 78.3
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 8.1e-182 640.6 405 78.3
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 3.1e-181 638.6 409 77.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 6.9e-181 637.5 408 78.2
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 2.6e-180 635.6 401 76.6
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 5.8e-180 634.4 410 77.3
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 7.6e-180 634.0 408 75.2
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.6e-180 634.0 443 71.1
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 1.3e-179 633.3 401 76.8
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.7e-179 632.9 409 77.3
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 3.8e-179 631.7 404 77.2
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 4.9e-179 631.3 405 75.8
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 6.4e-179 630.9 403 77.7
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 1.1e-178 630.2 394 76.9
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.1e-178 630.2 402 76.6
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.4e-178 629.8 406 77.1
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 1.4e-178 629.8 410 76.6
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.4e-178 629.8 401 76.1
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 1.9e-178 629.4 406 76.8
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 2.4e-178 629.0 394 76.6
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 3.2e-178 628.6 414 75.1
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 4.2e-178 628.2 414 75.6
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 4.2e-178 628.2 414 75.6
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 4.2e-178 628.2 400 76.2
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 5.4e-178 627.9 425 74.4
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 5.4e-178 627.9 404 75.7
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.6e-177 626.3 398 77.6
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 1.6e-177 626.3 405 75.3
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 1.6e-177 626.3 395 77.7
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 2.1e-177 625.9 405 75.3
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 6.0e-177 624.4 410 76.8
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 6.0e-177 624.4 409 76.5
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 7.9e-177 624.0 399 78.2
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 7.9e-177 624.0 402 75.9
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.0e-176 623.6 400 76.2
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.3e-176 623.2 394 76.4
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 1.3e-176 623.2 409 75.1
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.8e-176 622.9 395 76.7
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 6.7e-176 620.9 425 72.2
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 6.7e-176 620.9 406 75.1
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 3.3e-175 618.6 406 73.6
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 4.3e-175 618.2 408 76.0
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 4.3e-175 618.2 408 76.0
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 4.3e-175 618.2 390 76.9
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 5.6e-175 617.8 409 75.8
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 5.6e-175 617.8 405 74.6
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 9.6e-175 617.1 394 76.4
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 1.3e-174 616.7 451 71.2
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 2.8e-174 615.5 398 75.4
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 2.8e-174 615.5 425 71.8
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 3.7e-174 615.1 399 74.9
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 8.1e-174 614.0 394 75.9
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 8.1e-174 614.0 397 74.8
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.1e-173 613.6 403 75.7
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 1.1e-173 613.6 401 73.8
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 1.1e-173 613.6 396 75.5
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.1e-173 613.6 397 74.6
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 1.1e-173 613.6 396 75.5
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 1.4e-173 613.2 409 74.6
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 9.0e-173 610.5 400 75.0
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 9.0e-173 610.5 403 74.7
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 9.0e-173 610.5 457 68.1
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.2e-172 610.1 393 75.6
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.2e-172 610.1 409 73.3
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 1.5e-172 609.8 388 77.8
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 2.6e-172 609.0 393 75.3
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 7.6e-172 607.4 408 74.5
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 1.3e-171 606.7 392 75.3
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 8.4e-171 604.0 392 75.5
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 8.4e-171 604.0 408 73.8
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.4e-170 603.2 396 75.3
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 7.1e-170 600.9 398 74.4
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 2.1e-169 599.4 409 72.4
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 2.3e-168 595.9 415 71.3
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 8.7e-168 594.0 397 73.6
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 5.6e-167 591.3 399 73.4
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 7.4e-167 590.9 390 74.6
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 6.2e-166 587.8 438 67.4
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 1.4e-165 586.6 387 74.7
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.8e-165 586.3 369 78.6
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 5.3e-165 584.7 488 62.3
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 1.2e-164 583.6 398 73.6
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 9.3e-162 573.9 419 67.5
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 1.0e-160 570.5 437 67.5
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 1.3e-160 570.1 412 68.7
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.9e-159 566.2 395 70.1
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 2.2e-158 562.8 402 68.7
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 2.8e-158 562.4 396 69.4
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 1.1e-157 560.5 385 70.4
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.4e-152 543.5 402 70.6
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 9.7e-151 537.3 349 75.9
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 9.7e-151 537.3 406 64.8
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 4.8e-150 535.0 344 77.0
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 5.3e-149 531.6 358 72.9
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 2.6e-148 529.3 410 67.3
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.6e-148 529.3 350 73.1
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.9e-147 525.8 388 70.1
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 2.9e-147 525.8 372 70.4
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 5.3e-141 505.0 413 60.0
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 5.9e-140 501.5 418 60.0
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 3.9e-136 488.8 391 66.2
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 6.3e-134 481.5 390 60.3
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 5.5e-130 468.4 382 62.3
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 2.7e-129 466.1 396 59.6
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 6.1e-129 464.9 311 74.0
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 9.5e-114 414.5 352 62.2
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.0e-111 406.8 368 59.8
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 4.1e-109 399.1 234 81.2
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 3.9e-107 392.5 210 91.9
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 4.7e-105 385.6 411 49.4
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.6e-100 370.5 411 48.4
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 1.5e-95 354.0 208 81.7
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 4.4e-95 352.4 450 46.0
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 1.1e-93 347.8 272 65.4
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.9e-93 347.1 240 72.5
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 9.2e-93 344.7 205 81.0
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 4.6e-92 342.4 405 47.7
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 1.9e-90 337.0 254 66.1
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.6e-82 308.9 392 47.4
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.4e-77 294.3 357 49.6
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.2e-71 274.6 148 87.2
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 4.4e-71 272.7 454 37.9
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.0e-67 261.5 404 42.3
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 9.0e-64 248.4 427 37.9
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 3.4e-63 246.5 148 75.0
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 5.1e-59 232.6 235 54.5
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 4.3e-58 229.6 177 68.9
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 6.2e-57 225.7 173 65.9
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 3.4e-55 219.9 224 57.6
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 2.9e-54 216.9 183 61.7
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.1e-50 204.9 338 41.1
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.4e-48 197.2 123 77.2
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.5e-45 187.2 114 79.8
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 9.7e-34 148.7 267 36.3
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 8.5e-30 135.6 141 49.6
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 3.6e-28 130.2 84 70.2
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 6.7e-27 125.9 288 31.2
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 4.8e-25 119.8 81 70.4
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 1.1e-24 118.6 81 70.4
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.4e-24 118.2 103 58.3
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 1.9e-21 107.8 66 75.8
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 1.6e-20 104.8 63 74.6
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 2.7e-20 104.0 67 73.1
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 2.7e-12 77.4 44 75.0
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 3.6e-12 77.0 44 75.0
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 1.0e-11 75.5 53 71.7
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 5.2e-11 73.2 244 26.6
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 7.0e-08 62.8 53 62.3
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 9.1e-08 62.4 210 26.7
Peaxi162Scf00001g00369 Petunia axillaris HOM05D000783 ORTHO05D000705 9.1e-08 62.4 214 26.2
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 1.6e-07 61.6 55 63.6
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 2.0e-07 61.2 143 28.0
SGA_v2.0_scaffold1G00349 Striga asiatica HOM05D000783 ORTHO05D000705 3.5e-07 60.5 143 27.3
ECA248G0502 Erigeron canadensis HOM05D000783 ORTHO05D000705 7.7e-07 59.3 143 30.1
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 1.0e-06 58.9 195 25.6
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 2.2e-06 57.8 158 32.3
MSTRG.21645 Avicennia marina HOM05D000783 ORTHO05D000705 3.8e-06 57.0 143 28.0
Migut.D00135 Erythranthe guttata HOM05D000783 ORTHO05D000705 3.8e-06 57.0 143 26.6
CAN.G472.28 Capsicum annuum HOM05D000783 ORTHO05D000705 5.0e-06 56.6 195 26.7
Dinv33071 Davidia involucrata HOM05D000783 ORTHO05D000705 8.5e-06 55.8 217 27.2


User provided reference genes

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