Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.2e-281 972.6 515 100.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 6.1e-230 800.8 540 80.0
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.8e-227 792.0 542 79.5
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 4.4e-220 768.1 624 69.4
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 2.8e-219 765.4 511 81.2
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 3.8e-216 755.0 532 77.1
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 9.3e-146 521.2 541 57.1
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.6e-143 511.9 536 56.3
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 3.7e-142 509.2 526 56.5
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.8e-141 506.9 568 54.2
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 3.2e-138 496.1 536 56.5
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.6e-137 493.8 583 52.3
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.4e-133 480.7 534 55.1
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 2.6e-132 476.5 531 54.0
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 1.0e-131 474.6 520 56.3
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 9.3e-130 468.0 536 54.9
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.5e-129 466.1 533 53.7
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 4.6e-129 465.7 538 54.5
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.0e-128 464.5 555 53.7
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.3e-128 463.4 516 53.9
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 4.3e-127 459.1 529 53.3
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.4e-127 458.4 534 54.5
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 9.7e-127 458.0 528 54.9
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 9.7e-127 458.0 537 53.1
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 2.8e-126 456.4 527 54.1
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 8.2e-126 454.9 541 53.2
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.8e-125 453.8 547 53.2
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.2e-124 451.1 537 54.0
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.0e-124 450.3 537 54.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 7.7e-124 448.4 522 50.8
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 5.0e-123 445.7 536 53.5
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.5e-122 443.4 537 52.3
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.5e-122 443.4 532 53.0
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 9.4e-122 441.4 550 52.5
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.7e-121 439.9 519 52.2
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 3.6e-121 439.5 559 48.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 6.7e-120 435.3 522 52.1
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.5e-119 433.3 572 49.5
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.3e-119 432.6 529 52.9
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.8e-118 429.9 539 51.6
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 6.3e-118 428.7 542 51.1
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 8.2e-118 428.3 526 50.2
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 5.3e-117 425.6 565 49.6
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 2.0e-116 423.7 527 52.6
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 3.4e-116 422.9 529 50.3
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.2e-115 420.2 529 50.1
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.4e-114 417.5 526 51.3
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 4.7e-113 412.5 527 50.9
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 3.0e-112 409.8 540 49.6
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 3.3e-111 406.4 569 47.6
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 7.4e-111 405.2 574 48.4
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.8e-110 403.3 539 49.0
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.8e-109 400.6 543 49.7
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.1e-109 399.8 531 49.5
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.0e-107 394.8 544 48.2
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 3.8e-107 392.9 540 47.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 2.5e-106 390.2 470 53.4
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 4.2e-106 389.4 547 48.3
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.2e-105 387.9 497 51.7
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.2e-105 387.9 527 49.3
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.6e-105 387.5 553 48.6
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.7e-105 386.7 519 48.7
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 3.6e-105 386.3 541 48.2
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.3e-104 383.6 543 48.6
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.3e-102 377.9 530 48.5
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.8e-102 376.7 550 48.7
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 4.8e-102 375.9 534 47.9
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 5.3e-101 372.5 587 45.0
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.6e-100 370.9 539 47.5
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 2.2e-99 367.1 453 52.5
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.9e-99 366.7 530 47.7
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 8.5e-99 365.2 532 47.2
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.6e-97 360.9 534 46.8
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 2.7e-97 360.1 527 47.8
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 1.8e-96 357.5 524 45.4
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 9.7e-95 351.7 536 45.9
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.3e-94 351.3 533 45.0
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.7e-94 349.7 566 44.7
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 8.3e-94 348.6 567 44.3
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 7.0e-93 345.5 436 50.2
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.0e-92 344.0 524 46.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.0e-91 339.3 404 50.7
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.5e-90 337.0 521 45.1
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 5.5e-90 335.9 553 42.1
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 6.1e-89 332.4 537 44.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 6.1e-89 332.4 532 45.1
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.2e-87 328.2 528 43.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 4.4e-87 326.2 519 45.3
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 4.4e-87 326.2 519 45.1
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 4.8e-86 322.8 519 42.6
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 6.3e-86 322.4 520 43.7
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 5.5e-82 309.3 518 43.8
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 7.2e-82 308.9 539 41.9
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 9.5e-82 308.5 470 45.1
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.6e-79 300.4 514 40.9
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.6e-79 300.4 519 42.8
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.1e-77 295.0 559 40.3
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 3.2e-77 293.5 451 45.2
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.6e-76 291.2 464 44.2
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.0e-76 290.8 576 39.4
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.5e-76 290.0 317 54.3
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 7.8e-76 288.9 539 40.6
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.3e-75 287.3 533 40.3
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 6.8e-72 275.8 501 42.3
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 6.8e-72 275.8 501 42.3
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-71 275.0 291 53.6
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.9e-70 270.4 561 38.1
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 7.8e-68 262.3 533 40.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 3.7e-62 243.4 278 51.1
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 8.3e-62 242.3 374 44.4
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 6.2e-57 226.1 475 38.1
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 8.1e-57 225.7 393 41.2
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 3.2e-53 213.8 442 41.4
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.2e-53 213.8 442 41.6
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 6.2e-49 199.5 327 41.9
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 1.4e-45 188.3 565 32.2
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.6e-41 174.9 554 31.2
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 7.6e-39 166.0 517 29.4
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.6e-36 158.3 259 39.8
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.1e-34 152.1 438 34.0
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.9e-30 136.7 182 40.7
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 7.4e-26 122.9 239 43.1
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 5.5e-21 106.7 226 35.8
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.0e-19 102.4 228 36.4
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 5.1e-19 100.1 120 54.2
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.4e-16 91.3 120 50.0
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.9e-16 89.7 100 54.0
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 9.0e-16 89.4 210 34.8
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 3.4e-15 87.4 124 35.5
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 3.4e-15 87.4 228 36.4
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 3.8e-14 84.0 68 58.8
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 3.8e-14 84.0 192 34.4
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 3.9e-11 73.9 191 32.5
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 1.6e-09 68.6 100 45.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 1.6e-09 68.6 100 45.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 1.6e-09 68.6 100 45.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 1.6e-09 68.6 100 45.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 1.6e-09 68.6 100 45.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 1.6e-09 68.6 100 45.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 4.1e-08 63.9 111 39.6


User provided reference genes

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