Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000375g0270 Nicotiana tabacum HOM05D006808 ORTHO05D008610 2.2e-91 339.0 174 100.0
Solyc05g052240.3 Solanum lycopersicum HOM05D006808 ORTHO05D008610 3.1e-69 265.4 209 70.3
CAN.G203.51 Capsicum annuum HOM05D006808 ORTHO05D008610 2.0e-68 262.7 211 68.7
Nitab4.5_0002279g0030 Nicotiana tabacum HOM05D006808 ORTHO05D008610 2.9e-67 258.8 160 85.6
Sopen05g030780 Solanum pennellii HOM05D006808 ORTHO05D008610 8.5e-67 257.3 205 69.8
TWI73G0462 Tripterygium wilfordii HOM05D006808 ORTHO05D008610 1.2e-57 226.9 206 63.1
Dinv34481 Davidia involucrata HOM05D006808 ORTHO05D008610 4.7e-57 224.9 213 59.6
Potri.019G057800 Populus trichocarpa HOM05D006808 ORTHO05D008610 6.1e-57 224.6 211 60.7
TAR623G0123 Trochodendron aralioides HOM05D006808 ORTHO05D008610 1.1e-55 220.3 211 59.7
Gohir.A05G403200 Gossypium hirsutum HOM05D006808 ORTHO05D008610 2.6e-55 219.2 203 62.1
TWI53G1993 Tripterygium wilfordii HOM05D006808 ORTHO05D008610 2.6e-55 219.2 211 59.2
Lj8A55T83 Lonicera japonica HOM05D006808 ORTHO05D008610 4.4e-55 218.4 208 59.1
Rhsim03G0152000 Rhododendron simsii HOM05D006808 ORTHO05D008610 4.4e-55 218.4 213 58.2
Duzib128G2014 Durio zibethinus HOM05D006808 ORTHO05D008610 7.4e-55 217.6 203 61.6
COL.COLO4_08324 Corchorus olitorius HOM05D006808 ORTHO05D008610 9.7e-55 217.2 208 60.1
Actinidia13650 Actinidia chinensis HOM05D006808 ORTHO05D008610 1.3e-54 216.9 216 59.7
Duzib114G0525 Durio zibethinus HOM05D006808 ORTHO05D008610 1.3e-54 216.9 208 59.6
Gohir.D04G012300 Gossypium hirsutum HOM05D006808 ORTHO05D008610 1.3e-54 216.9 203 61.1
vmacro06890 Vaccinium macrocarpon HOM05D006808 ORTHO05D008610 1.3e-54 216.9 211 58.3
Prupe.2G263900 Prunus persica HOM05D006808 ORTHO05D008610 2.8e-54 215.7 211 58.8
Thecc.10G181400 Theobroma cacao HOM05D006808 ORTHO05D008610 2.8e-54 215.7 208 59.6
GSVIVG01032685001 Vitis vinifera HOM05D006808 ORTHO05D008610 8.2e-54 214.2 211 58.3
Atru.chr12.177 Acer truncatum HOM05D006808 ORTHO05D008610 1.1e-53 213.8 207 58.5
Sabra19G0073500 Salix brachista HOM05D006808 ORTHO05D008610 1.4e-53 213.4 211 57.3
Oeu044164.1 Olea europaea HOM05D006808 ORTHO05D008610 2.4e-53 212.6 205 60.0
Manes.07G140900 Manihot esculenta HOM05D006808 ORTHO05D008610 3.1e-53 212.2 211 58.3
Nn5g26853 Nelumbo nucifera HOM05D006808 ORTHO05D008610 6.9e-53 211.1 206 58.3
Aqoxy4G02407 Aquilegia oxysepala HOM05D006808 ORTHO05D008610 9.1e-53 210.7 209 56.5
FAN03G2408 Fragaria x ananassa HOM05D006808 ORTHO05D008610 1.2e-52 210.3 211 57.3
FvH4_7g25890 Fragaria vesca HOM05D006808 ORTHO05D008610 2.0e-52 209.5 211 56.9
FAN06G1576 Fragaria x ananassa HOM05D006808 ORTHO05D008610 2.0e-52 209.5 211 56.9
FAN10G3082 Fragaria x ananassa HOM05D006808 ORTHO05D008610 2.6e-52 209.1 211 56.9
Cpa.g.sc19.60 Carica papaya HOM05D006808 ORTHO05D008610 3.4e-52 208.8 208 55.8
CANSAT56G2327 Cannabis sativa HOM05D006808 ORTHO05D008610 5.9e-52 208.0 211 55.0
Cc02_g05390 Coffea canephora HOM05D006808 ORTHO05D008610 7.7e-52 207.6 216 55.6
PGR142G2065 Punica granatum HOM05D006808 ORTHO05D008610 1.3e-51 206.8 211 56.9
MSTRG.172 Avicennia marina HOM05D006808 ORTHO05D008610 2.2e-51 206.1 212 58.0
FAN01G2160 Fragaria x ananassa HOM05D006808 ORTHO05D008610 2.9e-51 205.7 211 55.9
MBI03_g08370_MAGBIO Magnolia biondii HOM05D006808 ORTHO05D008610 2.9e-51 205.7 199 59.3
CiPaw.02G198800 Carya illinoinensis HOM05D006808 ORTHO05D008610 3.8e-51 205.3 204 57.8
QL08p064804 Quercus lobata HOM05D006808 ORTHO05D008610 1.4e-50 203.4 203 57.1
ECA233G3418 Erigeron canadensis HOM05D006808 ORTHO05D008610 7.2e-50 201.1 207 55.6
HanXRQChr08g0221541 Helianthus annuus HOM05D006808 ORTHO05D008610 7.2e-50 201.1 207 55.6
SalBow3G3573 Salvia bowleyana HOM05D006808 ORTHO05D008610 9.4e-50 200.7 215 54.4
Nn2g10310 Nelumbo nucifera HOM05D006808 ORTHO05D008610 1.6e-49 199.9 219 52.5
Ca_29954_v3 Cicer arietinum L. HOM05D006808 ORTHO05D008610 1.4e-48 196.8 206 54.4
DCAR_019805 Daucus carota HOM05D006808 ORTHO05D008610 2.3e-48 196.1 212 51.4
Psat5g069280 Pisum sativum HOM05D006808 ORTHO05D008610 2.3e-48 196.1 206 53.4
TPR.G16134 Trifolium pratense HOM05D006808 ORTHO05D008610 5.2e-48 194.9 213 51.2
Medtr3g093980 Medicago truncatula HOM05D006808 ORTHO05D008610 6.7e-48 194.5 206 52.4
Sc11g0005840 Simmondsia chinensis HOM05D006808 ORTHO05D008610 6.7e-48 194.5 207 52.7
Phvul.009G143100 Phaseolus vulgaris HOM05D006808 ORTHO05D008610 8.8e-48 194.1 207 52.7
ATR1127G203 Amborella trichopoda HOM05D006808 ORTHO05D008610 1.5e-47 193.4 211 52.1
MELO3C020146.2 Cucumis melo HOM05D006808 ORTHO05D008610 4.4e-47 191.8 221 52.0
Lsat_1_v5_gn_8_11480 Lactuca sativa HOM05D006808 ORTHO05D008610 1.3e-46 190.3 207 53.6
VMungo1309G1960 Vigna mungo HOM05D006808 ORTHO05D008610 1.3e-46 190.3 207 52.2
CsaV3_5G010920 Cucumis sativus L. HOM05D006808 ORTHO05D008610 1.7e-46 189.9 211 52.6
SGA_v2.0_scaffold384G50428 Striga asiatica HOM05D006808 ORTHO05D008610 1.7e-46 189.9 212 53.3
CDE07G0319 Ceratophyllum demersum HOM05D006808 ORTHO05D008610 2.2e-46 189.5 206 51.5
CDE06G0937 Ceratophyllum demersum HOM05D006808 ORTHO05D008610 4.8e-46 188.3 204 52.5
Aa31LG11G6120 Aethionema arabicum HOM05D006808 ORTHO05D008610 1.1e-45 187.2 209 51.7
Lj1g0023491 Lotus japonicus HOM05D006808 ORTHO05D008610 1.1e-45 187.2 206 51.9
ClCG07G005100 Citrullus lanatus HOM05D006808 ORTHO05D008610 1.8e-45 186.4 211 52.6
Glyma.04G222400 Glycine max HOM05D006808 ORTHO05D008610 1.8e-45 186.4 207 51.7
AT5G05270 Arabidopsis thaliana HOM05D006808 ORTHO05D008610 1.2e-44 183.7 210 50.0
Sp6g37560 Schrenkiella parvula HOM05D006808 ORTHO05D008610 1.6e-44 183.3 210 50.5
Hund15819 Selenicereus undatus HOM05D006808 ORTHO05D008610 1.6e-44 183.3 207 51.2
arahy.Tifrunner.gnm1.ann1.SNS0I7 Arachis hypogaea HOM05D006808 ORTHO05D008610 4.5e-44 181.8 206 51.9
arahy.Tifrunner.gnm1.ann1.WYW97W Arachis hypogaea HOM05D006808 ORTHO05D008610 5.9e-44 181.4 206 51.9
AL6G15110 Arabidopsis lyrata HOM05D006808 ORTHO05D008610 1.0e-43 180.6 205 50.2
Thhalv10014675m.g Eutrema salsugineum HOM05D006808 ORTHO05D008610 1.0e-43 180.6 210 50.5
Lalb_Chr23g0272211 Lupinus albus HOM05D006808 ORTHO05D008610 1.7e-43 179.9 171 59.1
A10p30920 Brassica napus HOM05D006808 ORTHO05D008610 2.9e-43 179.1 205 50.2
BraA10t45137Z Brassica rapa HOM05D006808 ORTHO05D008610 2.9e-43 179.1 205 50.2
C09p71430 Brassica napus HOM05D006808 ORTHO05D008610 8.5e-43 177.6 205 49.3
BolC9t59906H Brassica oleracea HOM05D006808 ORTHO05D008610 8.5e-43 177.6 205 49.3
EL10Ac2g02642 Beta vulgaris HOM05D006808 ORTHO05D008610 1.9e-42 176.4 207 47.8
Haze_17355 Corylus avellana HOM05D006808 ORTHO05D008610 1.9e-42 176.4 186 57.5
Os11g0116300 Oryza sativa ssp. japonica HOM05D006808 ORTHO05D008610 1.9e-42 176.4 205 48.3
PSO170G3172 Papaver somniferum HOM05D006808 ORTHO05D008610 1.9e-42 176.4 213 47.4
Carub.0006s0420 Capsella rubella HOM05D006808 ORTHO05D008610 3.2e-42 175.6 210 49.0
Os12g0115700 Oryza sativa ssp. japonica HOM05D006808 ORTHO05D008610 3.2e-42 175.6 205 47.8
CARHR207960 Cardamine hirsuta HOM05D006808 ORTHO05D008610 5.5e-42 174.9 207 48.3
PSO017G4017 Papaver somniferum HOM05D006808 ORTHO05D008610 1.2e-41 173.7 209 47.4
PSO017G4891 Papaver somniferum HOM05D006808 ORTHO05D008610 1.2e-41 173.7 209 47.4
PSO017G6829 Papaver somniferum HOM05D006808 ORTHO05D008610 1.2e-41 173.7 209 47.4
HPP92_015591 Vanilla planifolia HOM05D006808 ORTHO05D008610 1.6e-41 173.3 204 48.0
Glyma.06G143000 Glycine max HOM05D006808 ORTHO05D008610 1.4e-40 170.2 159 56.6
MD07G1233400 Malus domestica HOM05D006808 ORTHO05D008610 1.4e-40 170.2 211 49.3
SHI28909 Sapria himalayana HOM05D006808 ORTHO05D008610 3.0e-40 169.1 159 55.3
MD01G1167300 Malus domestica HOM05D006808 ORTHO05D008610 2.7e-36 156.0 205 48.3
Ca_16867_v3 Cicer arietinum L. HOM05D006808 ORTHO05D008610 3.6e-33 145.6 159 54.7
Lsat_1_v5_gn_6_40701 Lactuca sativa HOM05D006808 ORTHO05D008610 1.8e-32 143.3 207 41.5
Zm00001eb163860 Zea mays HOM05D006808 ORTHO05D008610 2.3e-32 142.9 218 41.7
Lalb_Chr08g0239161 Lupinus albus HOM05D006808 ORTHO05D008610 3.4e-31 139.0 129 63.6
Ah.12g064370 Amaranthus hybridus HOM05D006808 ORTHO05D008610 2.1e-25 119.8 129 52.7
CSS0015529 Camellia sinensis var. sinensis HOM05D006808 ORTHO05D008610 6.3e-22 108.2 60 85.0
unitig_736.g22963 Utricularia gibba HOM05D001179 ORTHO05D003685 1.4e-21 107.1 160 42.5
Pp3c4_25770 Physcomitrium patens HOM05D006808 ORTHO05D008610 1.8e-21 106.7 158 39.9
Mapoly0175s0004 Marchantia polymorpha HOM05D006808 ORTHO05D008610 6.6e-19 98.2 159 39.6
Pp3c26_4040 Physcomitrium patens HOM05D006808 ORTHO05D008610 5.6e-18 95.1 155 37.4
Sed0020146 Sechium edule HOM05D006808 ORTHO05D008610 8.0e-17 91.3 64 78.1
PSO017G1798 Papaver somniferum HOM05D006808 ORTHO05D008610 6.8e-16 88.2 77 55.8
SMO358G0139 Selaginella moellendorffii HOM05D006808 ORTHO05D008610 1.5e-15 87.0 157 35.0
AagrBONN_evm.TU.Sc2ySwM_117.3318 Anthoceros agrestis HOM05D006808 ORTHO05D008610 2.2e-14 83.2 160 34.4
MD00G1021400 Malus domestica HOM05D006808 ORTHO05D008610 1.1e-13 80.9 125 48.8
AagrBONN_evm.TU.Sc2ySwM_117.3383 Anthoceros agrestis HOM05D006808 ORTHO05D008610 1.4e-13 80.5 84 45.2
AagrBONN_evm.TU.Sc2ySwM_369.401 Anthoceros agrestis HOM05D006808 ORTHO05D008610 4.6e-12 75.5 84 38.1
AagrBONN_evm.TU.Sc2ySwM_344.5062 Anthoceros agrestis HOM05D006808 ORTHO05D008610 6.0e-12 75.1 84 41.7
AagrBONN_evm.TU.Sc2ySwM_228.5586 Anthoceros agrestis HOM05D006808 ORTHO05D008610 3.0e-11 72.8 84 39.3
AagrBONN_evm.TU.Sc2ySwM_369.402 Anthoceros agrestis HOM05D006808 ORTHO05D008610 3.0e-11 72.8 84 36.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.0e-11 72.8 84 35.7
AagrBONN_evm.TU.Sc2ySwM_369.397 Anthoceros agrestis HOM05D006808 ORTHO05D008769 1.9e-10 70.1 84 36.9
AagrBONN_evm.TU.Sc2ySwM_117.3242 Anthoceros agrestis HOM05D006808 ORTHO05D008610 5.6e-10 68.6 84 41.7
AagrBONN_evm.TU.Sc2ySwM_117.3130 Anthoceros agrestis HOM05D006808 ORTHO05D008610 4.7e-09 65.5 85 35.3
Nn2g12834 Nelumbo nucifera HOM05D003362 ORTHO05D003783 4.7e-09 65.5 86 38.4
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 4.0e-08 62.4 147 30.6
AagrBONN_evm.TU.Sc2ySwM_228.3568 Anthoceros agrestis HOM05D007153 ORTHO05D008769 6.8e-08 61.6 93 34.4
Cc02_g08570 Coffea canephora HOM05D003362 ORTHO05D003783 6.8e-08 61.6 146 33.6
Ciclev10032697m.g Citrus clementina HOM05D003362 ORTHO05D003783 1.2e-07 60.8 149 29.5
Lj1A930T84 Lonicera japonica HOM05D003362 ORTHO05D003783 1.2e-07 60.8 146 30.8
SEGI_22659 Sequoiadendron giganteum HOM05D003362 ORTHO05D003783 1.2e-07 60.8 153 28.8
unitig_0.g651 Utricularia gibba HOM05D003362 ORTHO05D003783 1.2e-07 60.8 150 29.3
Migut.H02033 Erythranthe guttata HOM05D007153 ORTHO05D008769 2.0e-07 60.1 155 28.4
PGR142G2050 Punica granatum HOM05D003362 ORTHO05D003783 2.0e-07 60.1 86 37.2
Mapoly0167s0012 Marchantia polymorpha HOM05D003362 ORTHO05D003783 2.6e-07 59.7 157 29.3
EL10Ac2g03495 Beta vulgaris HOM05D003362 ORTHO05D003783 3.4e-07 59.3 86 32.6
CARHR281510 Cardamine hirsuta HOM05D003362 ORTHO05D003783 4.4e-07 58.9 152 27.6
Ah.06g183020 Amaranthus hybridus HOM05D003362 ORTHO05D003783 5.8e-07 58.5 146 27.4
COL.COLO4_10881 Corchorus olitorius HOM05D003362 ORTHO05D003783 5.8e-07 58.5 86 37.2
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 7.5e-07 58.2 86 36.0
Carub.0008s2828 Capsella rubella HOM05D003362 ORTHO05D003783 7.5e-07 58.2 152 28.3
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 9.8e-07 57.8 160 26.9
MSTRG.21607 Avicennia marina HOM05D003362 ORTHO05D003783 9.8e-07 57.8 151 28.5
Cfa001554 Carpinus fangiana HOM05D003362 ORTHO05D003783 9.8e-07 57.8 151 30.5
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 9.8e-07 57.8 147 27.2
Peaxi162Scf00006g00088 Petunia axillaris HOM05D003362 ORTHO05D003783 9.8e-07 57.8 87 33.3
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 9.8e-07 57.8 157 28.7
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 1.3e-06 57.4 86 36.0
TPR.G10424 Trifolium pratense HOM05D003362 ORTHO05D003783 1.3e-06 57.4 86 31.4
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 1.7e-06 57.0 86 33.7
FAN06G2019 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.7e-06 57.0 97 33.0
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.7e-06 57.0 146 30.1
CAN.G184.19 Capsicum annuum HOM05D003362 ORTHO05D003783 2.2e-06 56.6 86 34.9
MD01G1118100 Malus domestica HOM05D003362 ORTHO05D003783 2.2e-06 56.6 150 30.0
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 2.2e-06 56.6 147 26.5
Potri.010G213000 Populus trichocarpa HOM05D003362 ORTHO05D003783 2.2e-06 56.6 146 30.1
RcHm_v2.0_Chr1g0365111 Rosa chinensis HOM05D003362 ORTHO05D003783 2.2e-06 56.6 86 36.0
CDE04G0295 Ceratophyllum demersum HOM05D007153 ORTHO05D008769 2.9e-06 56.2 93 30.1
FvH4_7g20870 Fragaria vesca HOM05D003362 ORTHO05D003783 2.9e-06 56.2 86 34.9
FAN03G1303 Fragaria x ananassa HOM05D003362 ORTHO05D003783 2.9e-06 56.2 146 30.1
MD01G1117800 Malus domestica HOM05D003362 ORTHO05D003783 2.9e-06 56.2 86 34.9
MD01G1118000 Malus domestica HOM05D003362 ORTHO05D003783 2.9e-06 56.2 86 34.9
Gohir.A13G020400 Gossypium hirsutum HOM05D003362 ORTHO05D003783 3.7e-06 55.8 147 27.2
MD07G1186300 Malus domestica HOM05D003362 ORTHO05D003783 3.7e-06 55.8 150 29.3
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 4.9e-06 55.5 86 34.9
MD08G1224200 Malus domestica HOM05D006808 ORTHO05D008610 4.9e-06 55.5 38 76.3
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 4.9e-06 55.5 86 34.9
QL08p057674 Quercus lobata HOM05D003362 ORTHO05D003783 4.9e-06 55.5 86 36.0
Solyc05g010310.3 Solanum lycopersicum HOM05D003362 ORTHO05D003783 4.9e-06 55.5 150 26.7
TWI38G1411 Tripterygium wilfordii HOM05D003362 ORTHO05D003783 4.9e-06 55.5 86 32.6
Sopen05g006080 Solanum pennellii HOM05D003362 ORTHO05D003783 6.4e-06 55.1 150 26.7
CANSAT21G2171 Cannabis sativa HOM05D003362 ORTHO05D003783 8.3e-06 54.7 86 33.7
CANSAT56G2533 Cannabis sativa HOM05D007153 ORTHO05D008769 8.3e-06 54.7 131 27.5
Cpa.g.sc1855.1 Carica papaya HOM05D003362 ORTHO05D003783 8.3e-06 54.7 86 34.9
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 8.3e-06 54.7 147 26.5
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 8.3e-06 54.7 152 27.6
Solyc05g010320.4 Solanum lycopersicum HOM05D003362 ORTHO05D003783 8.3e-06 54.7 86 33.7


User provided reference genes

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