Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.3e-57 225.3 111 100.0
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.6e-40 167.5 96 88.5
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.3e-33 146.4 97 71.1
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 7.9e-26 120.6 94 63.8
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.1e-24 116.7 99 66.7
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.5e-24 115.5 90 64.4
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 2.4e-22 109.0 89 61.8
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 3.1e-22 108.6 90 60.0
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 6.9e-22 107.5 90 60.0
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.7e-20 102.8 97 51.5
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 8.4e-20 100.5 100 58.0
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.4e-19 99.8 90 57.8
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.4e-19 99.8 90 57.8
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.5e-19 99.0 90 55.6
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.5e-19 99.0 90 56.7
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.7e-18 95.5 90 54.4
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 4.6e-18 94.7 87 50.6
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 6.0e-18 94.4 96 49.0
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 7.9e-18 94.0 90 53.3
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.3e-17 93.2 99 48.5
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.3e-17 92.4 103 44.7
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 2.3e-17 92.4 99 47.5
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.3e-17 92.4 99 47.5
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 5.1e-17 91.3 96 52.1
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 6.7e-17 90.9 90 47.8
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 8.7e-17 90.5 90 50.0
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.9e-16 89.4 108 41.7
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.9e-16 89.4 102 45.1
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.3e-16 88.2 99 47.5
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.3e-16 88.2 98 46.9
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 4.3e-16 88.2 95 45.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 4.3e-16 88.2 96 49.0
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 9.7e-16 87.0 98 43.9
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 3.7e-15 85.1 105 43.8
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 3.7e-15 85.1 96 44.8
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 3.7e-15 85.1 90 48.9
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 3.7e-15 85.1 90 46.7
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 6.3e-15 84.3 103 46.6
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 6.3e-15 84.3 96 43.8
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 6.3e-15 84.3 86 48.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 8.2e-15 84.0 81 45.7
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.1e-14 83.6 104 43.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.1e-14 83.6 105 42.9
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.1e-14 83.6 86 50.0
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.4e-14 83.2 73 53.4
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.8e-14 82.8 93 48.4
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.8e-14 82.8 90 45.6
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 2.4e-14 82.4 96 42.7
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 2.4e-14 82.4 89 46.1
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 3.1e-14 82.0 81 46.9
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 3.1e-14 82.0 81 46.9
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.1e-14 82.0 91 46.2
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.1e-14 82.0 112 42.0
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 4.1e-14 81.6 81 48.1
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 4.1e-14 81.6 101 43.6
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 4.1e-14 81.6 86 48.8
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 4.1e-14 81.6 91 46.2
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 5.3e-14 81.3 100 43.0
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 5.3e-14 81.3 81 46.9
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 5.3e-14 81.3 81 46.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 5.3e-14 81.3 98 45.9
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.3e-14 81.3 96 46.9
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.3e-14 81.3 96 46.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 5.3e-14 81.3 86 48.8
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 6.9e-14 80.9 81 45.7
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 9.0e-14 80.5 81 44.4
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 9.0e-14 80.5 81 44.4
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 9.0e-14 80.5 89 41.6
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 9.0e-14 80.5 83 47.0
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 1.2e-13 80.1 81 44.4
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 1.2e-13 80.1 104 42.3
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.5e-13 79.7 89 43.8
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.5e-13 79.7 91 42.9
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.5e-13 79.7 85 49.4
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.5e-13 79.7 85 49.4
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.0e-13 79.3 101 44.6
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.0e-13 79.3 101 44.6
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.0e-13 79.3 101 44.6
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.0e-13 79.3 101 43.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-13 79.0 81 44.4
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 2.6e-13 79.0 81 46.9
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.6e-13 79.0 81 44.4
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.4e-13 78.6 99 43.4
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 4.5e-13 78.2 93 43.0
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 5.9e-13 77.8 94 43.6
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.6e-13 77.4 96 43.8
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.0e-12 77.0 99 41.4
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.0e-12 77.0 88 42.0
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-12 76.6 92 42.4
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.7e-12 76.3 91 40.7
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.7e-12 76.3 91 42.9
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.2e-12 75.9 95 43.2
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.2e-12 75.9 90 47.8
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.9e-12 75.5 97 42.3
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 2.9e-12 75.5 81 45.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 2.9e-12 75.5 99 42.4
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.9e-12 75.5 105 37.1
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 2.9e-12 75.5 102 42.2
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 5.0e-12 74.7 84 42.9
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.0e-12 74.7 95 42.1
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.0e-12 74.7 82 51.2
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 8.5e-12 73.9 91 42.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 8.5e-12 73.9 90 43.3
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 8.5e-12 73.9 88 44.3
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.1e-11 73.6 89 44.9
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 1.1e-11 73.6 102 38.2
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.4e-11 73.2 85 40.0
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.5e-11 72.4 93 38.7
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.2e-11 71.6 85 40.0
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 4.2e-11 71.6 92 38.0
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 5.5e-11 71.2 91 44.0
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.4e-11 70.5 85 38.8
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 9.4e-11 70.5 98 39.8
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.2e-10 70.1 88 38.6
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 1.6e-10 69.7 93 37.6
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.6e-10 69.7 113 37.2
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 2.7e-10 68.9 98 41.8
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 3.6e-10 68.6 72 50.0
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 6.1e-10 67.8 95 34.7
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.4e-09 66.6 91 40.7
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 3.9e-09 65.1 95 35.8
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.9e-09 65.1 88 39.8
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 3.9e-09 65.1 88 39.8
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 6.7e-09 64.3 107 33.6
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.1e-08 63.5 93 40.9
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.1e-08 63.5 88 39.8
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 3.3e-08 62.0 91 35.2
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.7e-08 61.2 85 40.0
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 5.7e-08 61.2 95 34.7
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.3e-07 60.1 93 35.5
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.3e-07 60.1 93 35.5
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.3e-07 60.1 92 39.1
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 2.8e-07 58.9 91 39.6
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 4.8e-07 58.2 104 31.7
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 4.8e-07 58.2 91 40.7
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 6.3e-07 57.8 104 32.7
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 9.1e-06 53.9 107 34.6


User provided reference genes

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