Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000374g0120 Nicotiana tabacum HOM05D009561 ORTHO05D003092 1.7e-255 885.6 463 100.0
Nitab4.5_0003393g0030 Nicotiana tabacum HOM05D009561 ORTHO05D003092 7.7e-208 727.2 460 85.4
CAN.G763.8 Capsicum annuum HOM05D009561 ORTHO05D003092 9.2e-177 624.0 486 71.2
Peaxi162Scf00088g01215 Petunia axillaris HOM05D009561 ORTHO05D003092 4.3e-166 588.6 481 69.4
Solyc07g007840.3 Solanum lycopersicum HOM05D009561 ORTHO05D003092 3.4e-147 525.8 480 63.1
Sopen07g003740 Solanum pennellii HOM05D009561 ORTHO05D003092 1.6e-144 516.9 477 62.7
Dinv41472 Davidia involucrata HOM05D003107 ORTHO05D003092 6.8e-63 245.7 500 40.0
CSS0017448 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 8.3e-53 212.2 479 39.7
CSS0015137 Camellia sinensis var. sinensis HOM05D009561 ORTHO05D003092 3.5e-51 206.8 474 39.9
QL02p089967 Quercus lobata HOM05D003107 ORTHO05D003092 1.0e-50 205.3 472 38.6
Rhsim01G0061100 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.1e-49 201.8 483 37.1
GSVIVG01015600001 Vitis vinifera HOM05D009561 ORTHO05D003092 3.1e-47 193.7 501 35.7
vmacro07728 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 1.5e-46 191.4 476 36.6
CiPaw.03G248900 Carya illinoinensis HOM05D003107 ORTHO05D003092 5.8e-46 189.5 506 34.4
Nn8g39562 Nelumbo nucifera HOM05D003107 ORTHO05D003092 9.8e-46 188.7 506 35.6
Thecc.09G133300 Theobroma cacao HOM05D003107 ORTHO05D003092 4.9e-45 186.4 489 35.0
Gohir.D06G052900 Gossypium hirsutum HOM05D003107 ORTHO05D003092 6.4e-45 186.0 363 38.6
Gohir.A06G053600 Gossypium hirsutum HOM05D003107 ORTHO05D003092 4.1e-44 183.3 436 35.6
Sabra18G0106800 Salix brachista HOM05D003107 ORTHO05D003092 6.0e-43 179.5 492 35.4
Potri.018G125500 Populus trichocarpa HOM05D003107 ORTHO05D003092 1.0e-42 178.7 496 35.3
Potri.T125307 Populus trichocarpa HOM05D003107 ORTHO05D003092 5.0e-42 176.4 496 35.1
Oeu052756.1 Olea europaea HOM05D009561 ORTHO05D003092 6.6e-42 176.0 476 35.5
Duzib187G1951 Durio zibethinus HOM05D003107 ORTHO05D003092 8.6e-42 175.6 466 33.7
TAR636G3294 Trochodendron aralioides HOM05D003107 ORTHO05D003092 4.3e-41 173.3 582 32.5
Gorai.010G061400 Gossypium raimondii HOM05D003107 ORTHO05D003092 1.6e-40 171.4 494 33.2
Hma1.2p1_0497F.1_g166410 Hydrangea macrophylla HOM05D003107 ORTHO05D003092 8.1e-40 169.1 272 43.8
Haze_25496 Corylus avellana HOM05D009561 ORTHO05D003092 4.0e-39 166.8 519 32.8
Cfa002924 Carpinus fangiana HOM05D003107 ORTHO05D003092 2.6e-38 164.1 481 34.7
Actinidia07321 Actinidia chinensis HOM05D003107 ORTHO05D003092 6.4e-37 159.5 460 34.8
Ciclev10007677m.g Citrus clementina HOM05D003107 ORTHO05D003092 4.6e-35 153.3 364 36.3
ECA234G1222 Erigeron canadensis HOM05D003107 ORTHO05D003092 1.0e-34 152.1 440 35.2
Cpa.g.sc46.47 Carica papaya HOM05D003107 ORTHO05D003092 2.3e-34 151.0 269 40.1
Manes.06G046500 Manihot esculenta HOM05D003107 ORTHO05D003092 1.5e-33 148.3 507 31.6
Sc18g0000310 Simmondsia chinensis HOM05D003107 ORTHO05D003092 2.5e-33 147.5 431 32.3
Aqoxy7G03629 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 6.2e-32 142.9 399 32.8
Lalb_Chr08g0234601 Lupinus albus HOM05D003107 ORTHO05D003092 2.3e-31 141.0 436 31.2
HPP92_010519 Vanilla planifolia HOM05D003107 ORTHO05D003092 1.7e-29 134.8 117 59.0
Ah.09g224690 Amaranthus hybridus HOM05D009561 ORTHO05D003092 1.2e-27 128.6 440 29.1
CAN.G763.7 Capsicum annuum HOM05D009561 ORTHO05D003092 1.2e-27 128.6 90 82.2
HanXRQChr12g0356791 Helianthus annuus HOM05D003107 ORTHO05D003092 1.6e-27 128.3 249 38.2
Lsat_1_v5_gn_5_93901 Lactuca sativa HOM05D003107 ORTHO05D003092 1.0e-26 125.6 114 59.6
AUR62011180 Chenopodium quinoa HOM05D003107 ORTHO05D003092 1.6e-24 118.2 488 27.5
CDE04G1135 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 2.8e-24 117.5 508 29.5
AUR62013303 Chenopodium quinoa HOM05D003107 ORTHO05D003092 6.2e-24 116.3 524 29.0
CAN.G763.6 Capsicum annuum HOM05D009561 ORTHO05D003092 1.4e-23 115.2 108 63.0
ATR0800G121 Amborella trichopoda HOM05D003107 ORTHO05D003092 4.0e-23 113.6 487 28.3
Os04g0644675 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 9.9e-22 109.0 112 50.0
Lj6g0021163 Lotus japonicus HOM05D003107 ORTHO05D003092 1.1e-20 105.5 103 53.4
Psat1g127320 Pisum sativum HOM05D009561 ORTHO05D003092 2.3e-18 97.8 104 49.0
TPR.G9542 Trifolium pratense HOM05D003107 ORTHO05D003092 3.9e-18 97.1 87 51.7
SHI33553 Sapria himalayana HOM05D014003 ORTHO05D016381 4.0e-15 87.0 408 28.7
Medtr6g033205 Medicago truncatula HOM05D009561 ORTHO05D003092 2.0e-14 84.7 105 48.6
ATR0772G192 Amborella trichopoda HOM05D009561 ORTHO05D003092 9.9e-14 82.4 242 29.3
Psat1g024000 Pisum sativum HOM05D003107 ORTHO05D003092 2.9e-13 80.9 95 40.0
SHI25697 Sapria himalayana HOM05D009561 ORTHO05D003092 7.1e-12 76.3 50 68.0
QL02p090018 Quercus lobata HOM05D009561 ORTHO05D003092 1.8e-10 71.6 64 59.4
AagrBONN_evm.TU.Sc2ySwM_344.4237 Anthoceros agrestis HOM05D003107 ORTHO05D003092 2.3e-10 71.2 247 27.9
TAR624G0993 Trochodendron aralioides HOM05D003107 ORTHO05D003092 3.0e-10 70.9 82 41.5
Psat1g023960 Pisum sativum HOM05D003107 ORTHO05D003092 5.1e-10 70.1 94 36.2
ATR0037G033 Amborella trichopoda HOM05D003107 ORTHO05D003092 1.9e-09 68.2 118 33.9
SHI41186 Sapria himalayana HOM05D009561 ORTHO05D003092 2.5e-09 67.8 47 68.1
Aqoxy1G02257 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 2.1e-08 64.7 142 31.0
Nn2g11838 Nelumbo nucifera HOM05D003107 ORTHO05D003092 3.7e-08 63.9 105 37.1
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 1.1e-07 62.4 246 26.4
Psat5g027640 Pisum sativum HOM05D003107 ORTHO05D003092 1.8e-07 61.6 128 32.8
SHI41184 Sapria himalayana HOM05D009561 ORTHO05D003092 1.8e-07 61.6 56 55.4
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 2.4e-07 61.2 107 29.0
Ca_15699_v3 Cicer arietinum L. HOM05D003107 ORTHO05D003092 2.4e-07 61.2 219 25.6
SGA_v2.0_scaffold27G11488 Striga asiatica HOM05D003107 ORTHO05D003092 4.0e-07 60.5 95 32.6
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 5.3e-07 60.1 115 34.8
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 5.3e-07 60.1 286 26.2
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 9.0e-07 59.3 97 35.1
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 9.0e-07 59.3 82 36.6
PSO170G1884 Papaver somniferum HOM05D003107 ORTHO05D003092 1.5e-06 58.5 104 33.7
Rhsim02G0187500 Rhododendron simsii HOM05D003107 ORTHO05D003092 1.5e-06 58.5 111 28.8
vmacro05445 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 1.5e-06 58.5 117 32.5
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 1.5e-06 58.5 241 25.7
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 2.0e-06 58.2 128 31.2
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 2.0e-06 58.2 150 28.0
PSO017G1142 Papaver somniferum HOM05D003107 ORTHO05D003092 3.4e-06 57.4 82 36.6
VMungo1309G0300 Vigna mungo HOM05D003107 ORTHO05D003092 4.5e-06 57.0 87 35.6
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 5.8e-06 56.6 94 33.0
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 5.8e-06 56.6 141 30.5
arahy.Tifrunner.gnm1.ann1.8TMD5Z Arachis hypogaea HOM05D003107 ORTHO05D003092 7.6e-06 56.2 94 33.0
HanXRQChr03g0078061 Helianthus annuus HOM05D003107 ORTHO05D003092 9.9e-06 55.8 97 32.0
Potri.018G034500 Populus trichocarpa HOM05D003107 ORTHO05D003092 9.9e-06 55.8 104 33.7
PGR031G3499 Punica granatum HOM05D003107 ORTHO05D003092 9.9e-06 55.8 108 32.4


User provided reference genes

Program Settings