Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.5e-56 221.9 112 100.0
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 9.0e-46 186.8 107 84.1
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.2e-45 186.4 107 83.2
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 3.4e-45 184.9 108 84.3
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 5.9e-45 184.1 107 82.2
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.9e-41 171.4 107 81.3
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.1e-35 153.3 112 72.3
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 5.5e-35 151.0 103 76.7
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 2.1e-34 149.1 111 70.3
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.3e-33 145.6 103 73.8
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 3.0e-33 145.2 112 71.4
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 2.2e-31 139.0 86 79.1
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 4.8e-31 137.9 93 76.3
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 6.3e-31 137.5 95 76.8
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 8.2e-31 137.1 96 72.9
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 8.2e-31 137.1 109 68.8
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-30 136.0 75 90.7
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-30 136.0 75 90.7
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.8e-30 136.0 83 83.1
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.8e-30 136.0 94 76.6
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 2.4e-30 135.6 76 86.8
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 2.4e-30 135.6 83 80.7
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 3.1e-30 135.2 89 78.7
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 3.1e-30 135.2 109 67.9
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 4.1e-30 134.8 77 87.0
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 5.3e-30 134.4 80 82.5
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 5.3e-30 134.4 75 86.7
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 6.9e-30 134.0 108 66.7
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 6.9e-30 134.0 79 82.3
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 6.9e-30 134.0 89 77.5
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.9e-30 134.0 89 77.5
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.9e-30 134.0 89 77.5
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.9e-30 134.0 89 77.5
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 6.9e-30 134.0 89 77.5
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 6.9e-30 134.0 86 80.2
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 9.1e-30 133.7 80 82.5
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.5e-29 132.9 80 80.0
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.5e-29 132.9 85 77.6
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 1.5e-29 132.9 89 77.5
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.5e-29 132.9 80 81.2
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.5e-29 132.9 86 75.6
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 1.5e-29 132.9 101 69.3
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.0e-29 132.5 80 80.0
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 2.6e-29 132.1 79 82.3
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 4.5e-29 131.3 76 82.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 4.5e-29 131.3 75 86.7
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 4.5e-29 131.3 80 78.8
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 5.9e-29 131.0 78 79.5
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 5.9e-29 131.0 78 79.5
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.0e-28 130.2 80 78.8
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.0e-28 130.2 100 70.0
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 1.7e-28 129.4 75 82.7
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 2.2e-28 129.0 81 77.8
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 2.2e-28 129.0 95 69.5
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.2e-28 129.0 86 74.4
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 2.2e-28 129.0 95 68.4
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.2e-28 129.0 81 76.5
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.9e-28 128.6 78 83.3
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.9e-28 128.6 78 83.3
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 2.9e-28 128.6 79 78.5
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 2.9e-28 128.6 80 76.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 2.9e-28 128.6 91 68.1
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.8e-28 128.3 89 76.4
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 3.8e-28 128.3 83 79.5
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 3.8e-28 128.3 77 79.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 3.8e-28 128.3 83 77.1
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 6.5e-28 127.5 79 78.5
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 6.5e-28 127.5 75 81.3
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 6.5e-28 127.5 80 77.5
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 6.5e-28 127.5 75 84.0
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 8.5e-28 127.1 76 81.6
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 8.5e-28 127.1 91 69.2
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 8.5e-28 127.1 70 87.1
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 8.5e-28 127.1 82 76.8
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 8.5e-28 127.1 85 71.8
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 1.1e-27 126.7 83 80.7
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-27 126.7 83 80.7
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-27 126.7 83 80.7
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 1.1e-27 126.7 83 80.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 1.1e-27 126.7 83 80.7
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.1e-27 126.7 78 80.8
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.1e-27 126.7 88 75.0
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-27 126.7 76 78.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 1.1e-27 126.7 76 78.9
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 1.1e-27 126.7 85 71.8
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.1e-27 126.7 75 81.3
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.1e-27 126.7 83 75.9
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.4e-27 126.3 79 77.2
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.4e-27 126.3 78 83.3
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-27 125.9 83 81.9
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-27 125.9 83 81.9
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.9e-27 125.9 83 81.9
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 1.9e-27 125.9 83 81.9
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 2.5e-27 125.6 96 68.8
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 2.5e-27 125.6 76 85.5
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 2.5e-27 125.6 76 85.5
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.5e-27 125.6 90 72.2
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 2.5e-27 125.6 83 80.7
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 2.5e-27 125.6 89 68.5
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.2e-27 125.2 80 75.0
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 3.2e-27 125.2 76 80.3
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 4.2e-27 124.8 76 82.9
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 5.5e-27 124.4 90 72.2
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 5.5e-27 124.4 85 72.9
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 5.5e-27 124.4 76 78.9
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 7.2e-27 124.0 83 79.5
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 9.4e-27 123.6 96 68.8
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 9.4e-27 123.6 80 76.2
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 9.4e-27 123.6 85 70.6
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 9.4e-27 123.6 80 75.0
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.6e-26 122.9 74 82.4
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.6e-26 122.9 76 82.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.6e-26 122.9 76 82.9
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.6e-26 122.9 78 76.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.1e-26 122.5 78 76.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 2.1e-26 122.5 70 82.9
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.1e-26 122.5 75 77.3
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 6.1e-26 120.9 74 78.4
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 8.0e-26 120.6 75 77.3
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 8.0e-26 120.6 75 78.7
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 2.3e-25 119.0 71 81.7
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 2.3e-25 119.0 74 81.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.3e-25 119.0 78 75.6
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 3.0e-25 118.6 83 75.9
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 3.0e-25 118.6 83 75.9
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 3.0e-25 118.6 71 81.7
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.0e-25 118.6 71 83.1
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 3.9e-25 118.2 76 80.3
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 3.9e-25 118.2 76 80.3
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 3.9e-25 118.2 76 80.3
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 3.9e-25 118.2 74 78.4
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 3.9e-25 118.2 74 78.4
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 6.7e-25 117.5 78 73.1
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 2.0e-24 115.9 93 64.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.6e-24 115.5 76 75.0
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.4e-24 114.8 76 76.3
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.4e-24 114.8 75 73.3
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.7e-24 114.4 74 75.7
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 9.7e-24 113.6 79 70.9
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 9.7e-24 113.6 76 77.6
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.7e-23 112.8 93 63.4
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 6.3e-23 110.9 76 75.0
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 6.3e-23 110.9 71 78.9
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 1.1e-22 110.2 76 73.7
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 1.1e-22 110.2 76 73.7
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 4.1e-22 108.2 76 72.4
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 4.1e-22 108.2 76 72.4
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 4.1e-22 108.2 76 72.4
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 5.3e-22 107.8 79 64.6
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 5.3e-22 107.8 75 68.0
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.2e-19 98.6 74 64.9
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 7.2e-19 97.4 92 57.6
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 4.4e-16 88.2 82 54.9
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 2.4e-14 82.4 68 66.2
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 2.4e-14 82.4 68 66.2
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.3e-07 60.1 72 51.4
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 8.3e-07 57.4 38 73.7


User provided reference genes

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