Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.4e-124 447.2 222 100.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.1e-106 388.3 204 94.1
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 6.9e-106 387.5 204 93.6
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 1.0e-104 383.6 204 92.6
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.9e-104 382.1 205 92.7
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 7.4e-100 367.5 206 89.3
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.9e-96 355.5 214 81.3
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 5.0e-96 354.8 204 84.3
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.5e-95 352.4 204 82.8
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 2.4e-90 335.9 206 80.1
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.5e-89 333.2 204 82.4
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 7.7e-89 330.9 204 77.9
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 3.8e-88 328.6 206 78.2
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.5e-87 325.9 204 77.5
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 3.2e-87 325.5 204 77.0
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.2e-86 323.6 204 76.5
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 2.1e-86 322.8 208 75.5
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.7e-86 321.6 204 77.0
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 7.9e-86 320.9 204 76.5
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.4e-85 320.1 204 74.5
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.4e-85 320.1 204 76.0
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.4e-85 320.1 205 76.6
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.4e-85 320.1 206 75.7
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 3.9e-85 318.5 204 77.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 5.1e-85 318.2 204 76.5
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-84 317.0 204 76.0
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.5e-84 316.6 206 72.8
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.6e-84 315.8 203 73.4
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 3.3e-84 315.5 206 72.8
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 5.7e-84 314.7 204 77.0
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 5.7e-84 314.7 204 75.0
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 7.4e-84 314.3 204 75.5
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.7e-83 313.2 205 74.6
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.8e-83 312.4 206 76.2
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 4.8e-83 311.6 205 74.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.3e-83 311.2 204 74.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 6.3e-83 311.2 204 75.0
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 8.2e-83 310.8 204 75.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.2e-83 310.8 204 75.0
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.4e-82 309.3 204 74.0
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 4.1e-82 308.5 201 76.1
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 9.1e-82 307.4 206 73.8
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 1.2e-81 307.0 194 75.8
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.6e-81 306.6 204 74.0
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 7.7e-81 304.3 197 76.1
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.0e-80 303.9 207 71.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.0e-80 303.9 206 71.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.0e-80 303.9 207 72.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 1.7e-80 303.1 203 74.9
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 1.7e-80 303.1 204 71.1
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 3.8e-80 302.0 203 72.9
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 5.0e-80 301.6 206 71.4
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 5.0e-80 301.6 203 73.4
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 6.5e-80 301.2 203 72.9
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 8.5e-80 300.8 205 73.2
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.1e-79 300.4 204 72.1
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.5e-79 300.1 206 71.8
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.5e-79 300.1 206 71.8
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.5e-79 300.1 203 72.4
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.9e-79 299.7 206 70.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.5e-79 299.3 227 67.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 2.5e-79 299.3 204 73.5
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 3.2e-79 298.9 203 71.4
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 3.2e-79 298.9 204 72.5
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 4.2e-79 298.5 206 70.4
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 5.5e-79 298.1 206 70.9
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 5.5e-79 298.1 203 71.9
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.6e-78 296.6 204 70.6
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.6e-78 296.6 204 72.1
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.6e-78 296.6 204 70.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.6e-78 296.6 204 70.6
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 2.1e-78 296.2 206 69.4
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.0e-77 293.9 204 71.6
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.4e-77 293.5 204 71.6
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.8e-77 293.1 204 71.1
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 2.3e-77 292.7 204 71.1
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.3e-77 292.7 206 71.8
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 3.0e-77 292.4 207 68.6
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 4.0e-77 292.0 204 71.1
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 4.0e-77 292.0 206 69.9
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.2e-77 291.6 204 71.6
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 5.2e-77 291.6 206 69.4
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 8.8e-77 290.8 204 71.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 8.8e-77 290.8 204 71.6
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 8.8e-77 290.8 204 71.6
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 8.8e-77 290.8 206 68.4
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 8.8e-77 290.8 206 70.9
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 69.0
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 69.0
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 1.1e-76 290.4 204 71.6
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.1e-76 290.4 204 68.1
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.0e-76 289.7 204 72.5
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.6e-76 289.3 204 66.7
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 3.3e-76 288.9 204 71.1
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 7.5e-76 287.7 210 69.0
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.3e-75 287.0 207 69.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.2e-75 286.2 205 68.3
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 3.7e-75 285.4 194 72.7
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 3.7e-75 285.4 206 67.0
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 6.3e-75 284.6 257 59.1
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 8.2e-75 284.3 204 69.6
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 1.4e-74 283.5 207 70.0
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.4e-74 283.5 204 67.2
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.4e-74 283.5 205 67.8
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.8e-74 283.1 208 66.3
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.8e-74 283.1 204 70.1
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.6e-73 280.0 143 97.9
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.0e-73 279.6 214 65.9
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 5.9e-73 278.1 203 68.0
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 5.9e-73 278.1 204 71.1
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.2e-72 276.2 205 68.8
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.9e-72 275.8 203 69.0
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 5.0e-72 275.0 203 68.5
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.1e-70 269.6 204 65.7
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 3.6e-70 268.9 206 63.1
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 4.7e-70 268.5 199 63.3
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 4.5e-65 251.9 206 60.7
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.2e-62 243.8 194 63.4
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 2.4e-58 229.6 207 52.7
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 3.8e-56 222.2 208 52.4
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 5.6e-55 218.4 213 53.1
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.8e-54 216.1 211 52.1
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.0e-53 214.2 209 51.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.8e-53 213.4 205 58.5
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.0e-53 212.6 154 72.7
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 6.8e-53 211.5 140 75.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.8e-52 207.6 139 73.4
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.7e-51 206.8 146 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.5e-47 193.7 207 48.3
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.5e-47 193.0 181 58.6
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.4e-45 187.2 148 66.9
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.7e-41 172.9 134 63.4
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.5e-39 167.2 127 63.8
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 4.1e-26 122.5 191 36.6
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 9.2e-26 121.3 193 35.8
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.3e-24 117.5 128 46.9
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.5e-23 114.0 197 37.1
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.6e-23 112.1 138 49.3
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.6e-22 110.5 73 65.8
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 8.1e-22 108.2 100 54.0
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.9e-21 104.8 66 71.2
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.6e-20 103.2 67 73.1
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.2e-18 95.9 68 72.1
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 4.8e-14 82.4 74 59.5
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.4e-13 80.1 51 72.5
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.5e-12 77.4 65 58.5
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.0e-09 65.5 67 50.7
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.0e-09 65.5 49 65.3
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 6.0e-09 65.5 49 65.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 7.9e-09 65.1 115 33.0
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 6.7e-08 62.0 42 66.7
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 8.1e-06 55.1 81 32.1


User provided reference genes

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