Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000359g0160 Nicotiana tabacum HOM05D000065 ORTHO05D007307 3.5e-45 184.5 88 100.0
Nitab4.5_0006775g0030 Nicotiana tabacum HOM05D000065 ORTHO05D007307 9.0e-25 116.7 142 49.3
Peaxi162Scf00111g00716 Petunia axillaris HOM05D000065 ORTHO05D007307 5.8e-24 114.0 143 47.6
CAN.G1804.17 Capsicum annuum HOM05D000065 ORTHO05D007307 2.9e-23 111.7 142 47.2
PGSC0003DMG400012140 Solanum tuberosum HOM05D000065 ORTHO05D007307 8.4e-23 110.2 142 46.5
Solyc08g082490.3 Solanum lycopersicum HOM05D000065 ORTHO05D007307 1.2e-21 106.3 142 44.4
Cc08_g16200 Coffea canephora HOM05D000065 ORTHO05D007307 1.6e-21 105.9 142 46.5
Sopen08g030740 Solanum pennellii HOM05D000065 ORTHO05D007307 4.6e-21 104.4 142 44.4
Dinv37520 Davidia involucrata HOM05D000065 ORTHO05D007307 7.9e-21 103.6 142 43.0
MSTRG.25688 Avicennia marina HOM05D000065 ORTHO05D007307 1.0e-20 103.2 142 43.7
TWI81G0782 Tripterygium wilfordii HOM05D000065 ORTHO05D007307 1.0e-20 103.2 142 43.7
CSS0002698 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D007307 1.8e-20 102.4 142 43.0
CSS0031016 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D007307 1.8e-20 102.4 142 43.0
Atru.chr9.1966 Acer truncatum HOM05D000065 ORTHO05D007307 3.9e-20 101.3 142 41.5
Actinidia27313 Actinidia chinensis HOM05D000065 ORTHO05D007307 5.1e-20 100.9 142 42.3
Eucgr.D01753 Eucalyptus grandis HOM05D000065 ORTHO05D007307 8.7e-20 100.1 141 43.3
arahy.Tifrunner.gnm1.ann1.7TG80C Arachis hypogaea HOM05D000065 ORTHO05D007307 1.5e-19 99.4 142 42.3
arahy.Tifrunner.gnm1.ann1.GB8HVP Arachis hypogaea HOM05D000065 ORTHO05D007307 1.5e-19 99.4 142 42.3
VMungo1215G2791 Vigna mungo HOM05D000065 ORTHO05D007307 1.5e-19 99.4 142 42.3
Lsat_1_v5_gn_6_83741 Lactuca sativa HOM05D000065 ORTHO05D007307 1.9e-19 99.0 142 43.0
Hma1.2p1_0359F.1_g135170 Hydrangea macrophylla HOM05D000065 ORTHO05D007307 2.5e-19 98.6 142 42.3
MD06G1109100 Malus domestica HOM05D000065 ORTHO05D007307 2.5e-19 98.6 142 41.5
Oeu055030.1 Olea europaea HOM05D000065 ORTHO05D007307 2.5e-19 98.6 141 41.8
Cpa.g.sc571.1 Carica papaya HOM05D000065 ORTHO05D007307 3.3e-19 98.2 142 40.1
COL.COLO4_10716 Corchorus olitorius HOM05D000065 ORTHO05D007307 4.3e-19 97.8 142 40.8
Lj5g0026493 Lotus japonicus HOM05D000065 ORTHO05D007307 4.3e-19 97.8 142 42.3
TWI15G0802 Tripterygium wilfordii HOM05D000065 ORTHO05D007307 4.3e-19 97.8 142 40.8
AUR62010855 Chenopodium quinoa HOM05D000065 ORTHO05D007307 7.4e-19 97.1 141 41.8
AUR62019853 Chenopodium quinoa HOM05D000065 ORTHO05D007307 7.4e-19 97.1 141 41.8
Glyma.01G226300 Glycine max HOM05D000065 ORTHO05D007307 7.4e-19 97.1 142 41.5
Sp6g06540 Schrenkiella parvula HOM05D000065 ORTHO05D007307 7.4e-19 97.1 138 39.1
Prupe.5G122000 Prunus persica HOM05D000065 ORTHO05D007307 9.7e-19 96.7 142 40.8
Ciclev10023992m.g Citrus clementina HOM05D000065 ORTHO05D007307 1.3e-18 96.3 120 45.8
Phvul.002G165200 Phaseolus vulgaris HOM05D000065 ORTHO05D007307 1.3e-18 96.3 142 40.8
ClCG07G011520 Citrullus lanatus HOM05D000065 ORTHO05D007307 2.2e-18 95.5 142 41.5
Rhsim07G0081600 Rhododendron simsii HOM05D000065 ORTHO05D007307 2.2e-18 95.5 142 40.8
THA.LOC104806436 Tarenaya hassleriana HOM05D000065 ORTHO05D007307 2.2e-18 95.5 142 38.7
Lsat_1_v5_gn_6_8360 Lactuca sativa HOM05D000065 ORTHO05D007307 3.7e-18 94.7 142 41.5
Gohir.D09G184700 Gossypium hirsutum HOM05D000065 ORTHO05D007307 6.3e-18 94.0 142 39.4
CARHR255660 Cardamine hirsuta HOM05D000065 ORTHO05D007307 8.2e-18 93.6 137 40.9
Duzib205G1871 Durio zibethinus HOM05D000065 ORTHO05D007307 8.2e-18 93.6 142 40.1
Thecc.03G300000 Theobroma cacao HOM05D000065 ORTHO05D007307 8.2e-18 93.6 142 40.8
GSVIVG01019553001 Vitis vinifera HOM05D000065 ORTHO05D007307 8.2e-18 93.6 142 40.1
Thhalv10028704m.g Eutrema salsugineum HOM05D000065 ORTHO05D007307 1.1e-17 93.2 142 38.0
FvH4_5g04800 Fragaria vesca HOM05D000065 ORTHO05D007307 1.4e-17 92.8 142 39.4
FAN08G1908 Fragaria x ananassa HOM05D000065 ORTHO05D007307 1.4e-17 92.8 142 39.4
AT4G10950 Arabidopsis thaliana HOM05D000065 ORTHO05D007307 1.8e-17 92.4 138 38.4
Carub.0006s2969 Capsella rubella HOM05D000065 ORTHO05D007307 1.8e-17 92.4 142 37.3
Migut.A00627 Erythranthe guttata HOM05D000065 ORTHO05D007307 1.8e-17 92.4 142 39.4
Gohir.A09G190000 Gossypium hirsutum HOM05D000065 ORTHO05D007307 1.8e-17 92.4 142 39.4
AL6G45040 Arabidopsis lyrata HOM05D000065 ORTHO05D007307 2.4e-17 92.0 142 37.3
CiPaw.12G081700 Carya illinoinensis HOM05D000065 ORTHO05D007307 2.4e-17 92.0 132 41.7
Gorai.006G207200 Gossypium raimondii HOM05D000065 ORTHO05D007307 2.4e-17 92.0 142 38.7
Lalb_Chr09g0320601 Lupinus albus HOM05D000065 ORTHO05D007307 2.4e-17 92.0 142 40.1
Psat2g185400 Pisum sativum HOM05D000065 ORTHO05D007307 2.4e-17 92.0 142 41.5
RcHm_v2.0_Chr7g0194451 Rosa chinensis HOM05D000065 ORTHO05D007307 2.4e-17 92.0 142 38.7
Sabra03G0101800 Salix brachista HOM05D000065 ORTHO05D007307 3.1e-17 91.7 142 38.7
BcaB01g01565 Brassica carinata HOM05D000065 ORTHO05D007307 5.3e-17 90.9 141 37.6
A09p28260 Brassica napus HOM05D000065 ORTHO05D007307 5.3e-17 90.9 141 37.6
BraA09t38395Z Brassica rapa HOM05D000065 ORTHO05D007307 5.3e-17 90.9 141 37.6
FAN13G2620 Fragaria x ananassa HOM05D000065 ORTHO05D007307 5.3e-17 90.9 142 39.4
FAN18G4505 Fragaria x ananassa HOM05D000065 ORTHO05D007307 5.3e-17 90.9 142 38.7
Nn3g18990 Nelumbo nucifera HOM05D000065 ORTHO05D007307 5.3e-17 90.9 141 38.3
QL02p030133 Quercus lobata HOM05D000065 ORTHO05D007307 5.3e-17 90.9 145 39.3
SGA_v2.0_scaffold96G29026 Striga asiatica HOM05D000065 ORTHO05D007307 5.3e-17 90.9 142 39.4
TPR.G37949 Trifolium pratense HOM05D000065 ORTHO05D007307 5.3e-17 90.9 150 39.3
FAN04G1997 Fragaria x ananassa HOM05D000065 ORTHO05D007307 6.9e-17 90.5 142 38.7
Manes.02G008800 Manihot esculenta HOM05D000065 ORTHO05D007307 6.9e-17 90.5 142 38.7
EL10Ac5g12931 Beta vulgaris HOM05D000065 ORTHO05D007307 9.0e-17 90.1 179 35.2
MELO3C016472.2 Cucumis melo HOM05D000065 ORTHO05D007307 9.0e-17 90.1 142 40.1
PGR031G2300 Punica granatum HOM05D000065 ORTHO05D007307 9.0e-17 90.1 141 39.7
BcaC04g21089 Brassica carinata HOM05D000065 ORTHO05D007307 1.2e-16 89.7 141 36.9
C09p35820 Brassica napus HOM05D000065 ORTHO05D007307 1.2e-16 89.7 141 36.9
BolC9t56416H Brassica oleracea HOM05D000065 ORTHO05D007307 1.2e-16 89.7 141 36.9
Potri.003G141300 Populus trichocarpa HOM05D000065 ORTHO05D007307 1.2e-16 89.7 142 38.0
Sed0019294 Sechium edule HOM05D000065 ORTHO05D007307 1.2e-16 89.7 141 40.4
CANSAT21G1895 Cannabis sativa HOM05D000065 ORTHO05D007307 1.5e-16 89.4 142 38.7
DCAR_028400 Daucus carota HOM05D000065 ORTHO05D007307 2.0e-16 89.0 141 41.1
Aa31LG9G11180 Aethionema arabicum HOM05D000906 ORTHO05D007307 2.6e-16 88.6 142 35.9
Ah.04g153110 Amaranthus hybridus HOM05D000065 ORTHO05D007307 2.6e-16 88.6 141 39.7
Hund14212 Selenicereus undatus HOM05D000065 ORTHO05D007307 2.6e-16 88.6 141 39.0
Sc22g0004950 Simmondsia chinensis HOM05D000065 ORTHO05D007307 2.6e-16 88.6 141 41.1
Ca_24495_v3 Cicer arietinum L. HOM05D001176 ORTHO05D008595 3.4e-16 88.2 142 40.1
PSO170G2142 Papaver somniferum HOM05D000065 ORTHO05D007307 5.9e-16 87.4 141 36.9
TAR375G0581 Trochodendron aralioides HOM05D000065 ORTHO05D007307 5.9e-16 87.4 141 38.3
CDE10G1152 Ceratophyllum demersum HOM05D000065 ORTHO05D007307 7.7e-16 87.0 141 35.5
Aqoxy5G04294 Aquilegia oxysepala HOM05D000065 ORTHO05D007307 1.0e-15 86.7 141 39.0
PSO063G2420 Papaver somniferum HOM05D000065 ORTHO05D007307 1.0e-15 86.7 141 36.2
CsaV3_3G020460 Cucumis sativus L. HOM05D000065 ORTHO05D007307 1.3e-15 86.3 142 39.4
Medtr5g009100 Medicago truncatula HOM05D000065 ORTHO05D007307 1.3e-15 86.3 142 39.4
FAN04G1616 Fragaria x ananassa HOM05D000065 ORTHO05D007307 1.7e-15 85.9 142 37.3
ECA240G3897 Erigeron canadensis HOM05D000065 ORTHO05D007307 5.0e-15 84.3 141 39.0
ECA240G4646 Erigeron canadensis HOM05D002356 ORTHO05D007307 5.0e-15 84.3 141 39.0
CAN.G1804.18 Capsicum annuum HOM05D000065 ORTHO05D007307 6.5e-15 84.0 142 40.1
Lj2C165T12 Lonicera japonica HOM05D000065 ORTHO05D007307 6.5e-15 84.0 159 37.1
ECA248G0924 Erigeron canadensis HOM05D000065 ORTHO05D007307 1.4e-14 82.8 141 39.0
HPP92_002924 Vanilla planifolia HOM05D000065 ORTHO05D007307 1.4e-14 82.8 141 36.2
Nitab4.5_0018912g0010 Nicotiana tabacum HOM05D000152 ORTHO05D007307 4.6e-13 77.8 37 86.5
Nitab4.5_0001210g0170 Nicotiana tabacum HOM05D000065 ORTHO05D007307 1.8e-12 75.9 126 41.3
vmacro13891 Vaccinium macrocarpon HOM05D000065 ORTHO05D007307 1.8e-12 75.9 37 83.8
MD14G1130100 Malus domestica HOM05D000065 ORTHO05D007307 1.1e-11 73.2 36 83.3
Zm00001eb237060 Zea mays HOM05D000065 ORTHO05D007307 3.3e-11 71.6 151 33.1
HanXRQChr13g0415421 Helianthus annuus HOM05D000065 ORTHO05D007307 1.3e-10 69.7 188 29.8
Nitab4.5_0000798g0010 Nicotiana tabacum HOM05D000065 ORTHO05D007307 1.3e-10 69.7 37 78.4
Nitab4.5_0006775g0060 Nicotiana tabacum HOM05D000152 ORTHO05D007307 1.7e-10 69.3 37 78.4
SEGI_24571 Sequoiadendron giganteum HOM05D000065 ORTHO05D007307 1.7e-10 69.3 141 34.8
HPP92_028639 Vanilla planifolia HOM05D000065 ORTHO05D000758 2.4e-09 65.5 38 71.1
SMO358G0512 Selaginella moellendorffii HOM05D000065 ORTHO05D007307 5.3e-09 64.3 140 32.9
Peaxi162Scf00714g00529 Petunia axillaris HOM05D000065 ORTHO05D007307 7.7e-08 60.5 45 68.9
ATR0602G040 Amborella trichopoda HOM05D000065 ORTHO05D007307 1.0e-07 60.1 140 32.1
Os02g0290900 Oryza sativa ssp. japonica HOM05D000065 ORTHO05D007307 1.7e-07 59.3 37 67.6
Peaxi162Scf00280g00033 Petunia axillaris HOM05D000065 ORTHO05D007307 2.2e-07 58.9 46 67.4
SMO203G0083 Selaginella moellendorffii HOM05D000065 ORTHO05D007307 3.8e-07 58.2 37 67.6
MBI06_g46248_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D007307 5.0e-07 57.8 141 29.8
Phvul.010G143600 Phaseolus vulgaris HOM05D000152 ORTHO05D001212 6.5e-07 57.4 41 61.0
Glyma.02G232400 Glycine max HOM05D000152 ORTHO05D001046 8.5e-07 57.0 56 46.4
CANSAT56G0404 Cannabis sativa HOM05D000152 ORTHO05D001212 1.9e-06 55.8 37 62.2
CDE06G0808 Ceratophyllum demersum HOM05D000152 ORTHO05D001212 1.9e-06 55.8 37 64.9
SMO358G0153 Selaginella moellendorffii HOM05D000065 ORTHO05D007307 2.5e-06 55.5 37 64.9
Lsat_1_v5_gn_2_24340 Lactuca sativa HOM05D000152 ORTHO05D001212 3.2e-06 55.1 81 42.0
EL10Ac9g21048 Beta vulgaris HOM05D000152 ORTHO05D001212 4.2e-06 54.7 37 64.9
Haze_09082 Corylus avellana HOM05D000065 ORTHO05D007307 4.2e-06 54.7 46 56.5
MELO3C021467.2 Cucumis melo HOM05D000152 ORTHO05D001212 4.2e-06 54.7 39 61.5
Cc04_g02380 Coffea canephora HOM05D000152 ORTHO05D001212 5.5e-06 54.3 49 55.1
Phvul.003G013500 Phaseolus vulgaris HOM05D000152 ORTHO05D001046 5.5e-06 54.3 62 41.9
Pp3c17_2780 Physcomitrium patens HOM05D000152 ORTHO05D001212 5.5e-06 54.3 44 56.8
CsaV3_6G014570 Cucumis sativus L. HOM05D000152 ORTHO05D001212 7.2e-06 53.9 39 61.5
MBI01_g01245_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D001212 7.2e-06 53.9 41 58.5
PGR102G2794 Punica granatum HOM05D000152 ORTHO05D001046 7.2e-06 53.9 59 44.1
Sed0020149 Sechium edule HOM05D000152 ORTHO05D001212 7.2e-06 53.9 39 61.5
TPR.G24970 Trifolium pratense HOM05D000152 ORTHO05D001046 7.2e-06 53.9 56 46.4
VMungo0331G1044 Vigna mungo HOM05D000152 ORTHO05D001212 7.2e-06 53.9 41 58.5
Lj3g0008067 Lotus japonicus HOM05D000152 ORTHO05D001212 9.4e-06 53.5 37 62.2
Thecc.06G102500 Theobroma cacao HOM05D000152 ORTHO05D001212 9.4e-06 53.5 41 56.1


User provided reference genes

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