Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000357g0150 Nicotiana tabacum HOM05D004080 ORTHO05D004855 1.9e-136 489.2 253 100.0
PGSC0003DMG400028851 Solanum tuberosum HOM05D004080 ORTHO05D004855 2.0e-109 399.4 251 86.5
Nitab4.5_0003981g0090 Nicotiana tabacum HOM05D004080 ORTHO05D004855 4.6e-106 388.3 255 82.4
Nitab4.5_0004589g0010 Nicotiana tabacum HOM05D004080 ORTHO05D004855 1.1e-104 383.6 229 88.6
Nitab4.5_0008798g0030 Nicotiana tabacum HOM05D004080 ORTHO05D004855 1.6e-103 379.8 250 82.4
Cc04_g00780 Coffea canephora HOM05D004080 ORTHO05D004855 4.8e-103 378.3 249 83.1
Sopen12g024050 Solanum pennellii HOM05D004080 ORTHO05D004855 1.8e-102 376.3 260 80.4
Solyc12g049580.2 Solanum lycopersicum HOM05D004080 ORTHO05D004855 4.0e-102 375.2 264 79.5
Sopen12g024060 Solanum pennellii HOM05D004080 ORTHO05D004855 9.0e-102 374.0 260 80.0
Peaxi162Scf00038g02253 Petunia axillaris HOM05D004080 ORTHO05D004855 5.8e-101 371.3 253 82.2
PGR102G0694 Punica granatum HOM05D004080 ORTHO05D004855 5.8e-101 371.3 250 81.2
MSTRG.22520 Avicennia marina HOM05D004080 ORTHO05D004855 1.0e-100 370.5 249 79.9
CSS0029048 Camellia sinensis var. sinensis HOM05D004080 ORTHO05D004855 8.4e-100 367.5 257 80.9
CAN.G1073.7 Capsicum annuum HOM05D004080 ORTHO05D004855 8.4e-100 367.5 251 82.1
Rhsim08G0244100 Rhododendron simsii HOM05D004080 ORTHO05D004855 1.1e-99 367.1 264 78.0
Hma1.2p1_0229F.1_g097040 Hydrangea macrophylla HOM05D004080 ORTHO05D004855 1.2e-98 363.6 250 80.8
Manes.11G013200 Manihot esculenta HOM05D004080 ORTHO05D004855 6.7e-97 357.8 252 79.0
GSVIVG01016675001 Vitis vinifera HOM05D004080 ORTHO05D004855 8.7e-97 357.5 249 79.1
ClCG09G001360 Citrullus lanatus HOM05D004080 ORTHO05D004855 2.5e-96 355.9 249 76.3
MELO3C024310.2 Cucumis melo HOM05D004080 ORTHO05D004855 7.4e-96 354.4 249 76.3
CsaV3_7G033970 Cucumis sativus L. HOM05D004080 ORTHO05D004855 7.4e-96 354.4 249 75.5
DCAR_007657 Daucus carota HOM05D004080 ORTHO05D004855 7.4e-96 354.4 250 79.2
MD17G1153700 Malus domestica HOM05D004080 ORTHO05D004855 2.1e-95 352.8 256 76.6
TWI23G0788 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 2.1e-95 352.8 252 76.2
MD09G1173400 Malus domestica HOM05D004080 ORTHO05D004855 4.8e-95 351.7 256 76.2
TWI14G1096 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 6.3e-95 351.3 250 76.0
SalBow6G1171 Salvia bowleyana HOM05D004080 ORTHO05D004855 8.2e-95 350.9 248 76.2
Sed0028223 Sechium edule HOM05D004080 ORTHO05D004855 1.8e-94 349.7 250 76.8
CiPaw.02G131500 Carya illinoinensis HOM05D004080 ORTHO05D004855 2.4e-94 349.4 251 76.9
Lj9A537G36 Lonicera japonica HOM05D004080 ORTHO05D004855 3.1e-94 349.0 254 78.0
Cfa003466 Carpinus fangiana HOM05D004080 ORTHO05D004855 4.1e-94 348.6 259 74.5
Potri.003G072100 Populus trichocarpa HOM05D004080 ORTHO05D004855 1.2e-93 347.1 254 75.2
Potri.001G163300 Populus trichocarpa HOM05D004080 ORTHO05D004855 4.5e-93 345.1 254 76.4
Gohir.A06G194600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 1.0e-92 344.0 258 74.0
TAR626G1035 Trochodendron aralioides HOM05D004080 ORTHO05D004855 1.3e-92 343.6 248 77.4
Migut.D00915 Erythranthe guttata HOM05D004080 ORTHO05D004855 2.2e-92 342.8 256 72.7
Sabra01G0129400 Salix brachista HOM05D004080 ORTHO05D004855 2.2e-92 342.8 250 75.2
Ciclev10025790m.g Citrus clementina HOM05D004080 ORTHO05D004855 2.9e-92 342.4 252 74.6
Prupe.3G031500 Prunus persica HOM05D004080 ORTHO05D004855 2.9e-92 342.4 252 77.0
FvH4_6g35750 Fragaria vesca HOM05D004080 ORTHO05D004855 5.0e-92 341.7 256 76.2
FAN09G4052 Fragaria x ananassa HOM05D004080 ORTHO05D004855 5.0e-92 341.7 256 76.2
SGA_v2.0_scaffold4G02093 Striga asiatica HOM05D004080 ORTHO05D004855 8.5e-92 340.9 252 73.8
Oeu013440.1 Olea europaea HOM05D004080 ORTHO05D004855 1.9e-91 339.7 250 74.4
vmacro15082 Vaccinium macrocarpon HOM05D004080 ORTHO05D004855 2.5e-91 339.3 288 68.8
Gohir.D06G202300 Gossypium hirsutum HOM05D004080 ORTHO05D004855 3.2e-91 339.0 258 72.5
Gorai.010G236200 Gossypium raimondii HOM05D004080 ORTHO05D004855 3.2e-91 339.0 258 72.5
Lsat_1_v5_gn_1_39161 Lactuca sativa HOM05D004080 ORTHO05D004855 3.2e-91 339.0 259 75.3
FAN05G3978 Fragaria x ananassa HOM05D004080 ORTHO05D004855 4.2e-91 338.6 256 75.4
FAN14G5022 Fragaria x ananassa HOM05D004080 ORTHO05D004855 4.2e-91 338.6 256 75.8
Cpa.g.sc25.185 Carica papaya HOM05D004080 ORTHO05D004855 7.2e-91 337.8 259 73.7
Haze_16125 Corylus avellana HOM05D004080 ORTHO05D004855 9.3e-91 337.4 294 65.6
THA.LOC104815600 Tarenaya hassleriana HOM05D004080 ORTHO05D004855 9.3e-91 337.4 258 74.8
CANSAT56G1857 Cannabis sativa HOM05D004080 ORTHO05D004855 1.2e-90 337.0 259 74.9
FAN02G3159 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.2e-90 337.0 256 75.8
RcHm_v2.0_Chr2g0147751 Rosa chinensis HOM05D004080 ORTHO05D004855 1.2e-90 337.0 258 75.2
arahy.Tifrunner.gnm1.ann1.L3RKN8 Arachis hypogaea HOM05D004080 ORTHO05D004855 1.0e-89 334.0 248 72.6
Lsat_1_v5_gn_4_92141 Lactuca sativa HOM05D004080 ORTHO05D004855 1.3e-89 333.6 281 70.1
Lj1g0023220 Lotus japonicus HOM05D004080 ORTHO05D004855 1.3e-89 333.6 248 74.6
Sabra03G0042900 Salix brachista HOM05D004080 ORTHO05D004855 1.3e-89 333.6 250 72.8
QL05p001373 Quercus lobata HOM05D004080 ORTHO05D004855 1.8e-89 333.2 260 71.2
AL2G32020 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 3.0e-89 332.4 251 74.1
Thecc.06G129400 Theobroma cacao HOM05D004080 ORTHO05D004855 3.0e-89 332.4 260 72.3
arahy.Tifrunner.gnm1.ann1.Z4XL8W Arachis hypogaea HOM05D004080 ORTHO05D004855 3.9e-89 332.0 248 72.2
Gohir.D05G143600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 6.7e-89 331.3 263 71.9
TAR383G0367 Trochodendron aralioides HOM05D004080 ORTHO05D004855 8.7e-89 330.9 255 74.1
Duzib235G0388 Durio zibethinus HOM05D004080 ORTHO05D004855 1.9e-88 329.7 264 72.0
Thhalv10018714m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 2.5e-88 329.3 251 74.9
Carub.0002s1920 Capsella rubella HOM05D004080 ORTHO05D004855 3.3e-88 328.9 251 73.3
A02p17960 Brassica napus HOM05D004080 ORTHO05D004855 4.3e-88 328.6 249 75.5
BraA02t06843Z Brassica rapa HOM05D004080 ORTHO05D004855 7.4e-88 327.8 249 75.9
BcaC03g15371 Brassica carinata HOM05D004080 ORTHO05D004855 9.7e-88 327.4 253 74.3
C02p29850 Brassica napus HOM05D004080 ORTHO05D004855 9.7e-88 327.4 253 74.3
Eucgr.J02599 Eucalyptus grandis HOM05D004080 ORTHO05D004855 9.7e-88 327.4 272 68.8
BcaC08g43566 Brassica carinata HOM05D004080 ORTHO05D004855 3.7e-87 325.5 252 70.6
C06p09640 Brassica napus HOM05D004080 ORTHO05D004855 3.7e-87 325.5 252 70.6
BolC6t36036H Brassica oleracea HOM05D004080 ORTHO05D004855 3.7e-87 325.5 252 70.6
BolC2t09033H Brassica oleracea HOM05D004080 ORTHO05D004855 4.8e-87 325.1 251 74.1
CARHR065250 Cardamine hirsuta HOM05D004080 ORTHO05D004855 4.8e-87 325.1 252 72.6
AT1G72340 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 6.3e-87 324.7 251 73.3
Sc12g0010900 Simmondsia chinensis HOM05D004080 ORTHO05D004855 6.3e-87 324.7 251 74.1
Atru.chr1.4109 Acer truncatum HOM05D004080 ORTHO05D004855 8.2e-87 324.3 255 71.4
Aa31LG10G1450 Aethionema arabicum HOM05D004080 ORTHO05D004855 1.4e-86 323.6 254 73.6
Carub.0001s4316 Capsella rubella HOM05D004080 ORTHO05D004855 1.4e-86 323.6 249 72.3
Gorai.009G147500 Gossypium raimondii HOM05D004080 ORTHO05D004855 1.4e-86 323.6 262 70.6
Sp5g27430 Schrenkiella parvula HOM05D004080 ORTHO05D004855 1.4e-86 323.6 251 74.1
AT1G53880 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.8e-86 323.2 249 72.7
AT1G53900 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.8e-86 323.2 249 72.7
C06p46700 Brassica napus HOM05D004080 ORTHO05D004855 1.8e-86 323.2 252 73.8
BolC6t39715H Brassica oleracea HOM05D004080 ORTHO05D004855 1.8e-86 323.2 252 73.8
Aa31LG4G2700 Aethionema arabicum HOM05D001342 ORTHO05D004855 2.4e-86 322.8 251 74.1
BraA07t31412Z Brassica rapa HOM05D004080 ORTHO05D004855 2.4e-86 322.8 253 74.3
A07p38520 Brassica napus HOM05D004080 ORTHO05D004855 5.3e-86 321.6 249 74.3
BcaB03g14982 Brassica carinata HOM05D004080 ORTHO05D004855 6.9e-86 321.2 248 73.4
AUR62001413 Chenopodium quinoa HOM05D004080 ORTHO05D004855 6.9e-86 321.2 254 71.3
Duzib192G0957 Durio zibethinus HOM05D004080 ORTHO05D004855 6.9e-86 321.2 259 69.9
Nn6g35722 Nelumbo nucifera HOM05D004080 ORTHO05D004855 9.1e-86 320.9 257 70.8
Lalb_Chr18g0044901 Lupinus albus HOM05D004080 ORTHO05D004855 2.0e-85 319.7 257 70.4
Phvul.009G262000 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 2.0e-85 319.7 248 70.2
Thhalv10011350m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 3.4e-85 318.9 248 72.2
VMungo1309G1832 Vigna mungo HOM05D004080 ORTHO05D004855 7.7e-85 317.8 248 69.4
Ah.08g217320 Amaranthus hybridus HOM05D004080 ORTHO05D004855 1.0e-84 317.4 247 72.1
EL10Ac7g16485 Beta vulgaris HOM05D004080 ORTHO05D004855 1.0e-84 317.4 256 70.3
Glyma.03G263500 Glycine max HOM05D004080 ORTHO05D004855 1.7e-84 316.6 249 70.7
Glyma.19G262500 Glycine max HOM05D004080 ORTHO05D004855 2.2e-84 316.2 248 70.2
BolC6t36718H Brassica oleracea HOM05D004080 ORTHO05D004855 5.0e-84 315.1 249 73.1
AL1G62590 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 1.1e-83 313.9 248 71.8
BcaB05g24748 Brassica carinata HOM05D004080 ORTHO05D004855 1.9e-83 313.2 211 81.5
COL.COLO4_30858 Corchorus olitorius HOM05D004080 ORTHO05D004855 1.9e-83 313.2 250 71.6
A06p00710 Brassica napus HOM05D004080 ORTHO05D004855 1.2e-82 310.5 248 69.4
CARHR044200 Cardamine hirsuta HOM05D004080 ORTHO05D004855 1.6e-82 310.1 249 71.9
Sp1g40370 Schrenkiella parvula HOM05D004080 ORTHO05D004855 2.1e-82 309.7 216 79.2
BcaC08g44141 Brassica carinata HOM05D004080 ORTHO05D004855 3.6e-82 308.9 249 72.7
Dinv37823 Davidia involucrata HOM05D004080 ORTHO05D004855 3.1e-78 295.8 224 75.9
PSO135G0363 Papaver somniferum HOM05D004080 ORTHO05D004855 5.3e-78 295.0 248 67.3
Lalb_Chr17g0343291 Lupinus albus HOM05D004080 ORTHO05D004855 6.9e-78 294.7 200 78.5
arahy.Tifrunner.gnm1.ann1.E9FGF4 Arachis hypogaea HOM05D004080 ORTHO05D004855 2.6e-77 292.7 208 75.5
arahy.Tifrunner.gnm1.ann1.I2K3PU Arachis hypogaea HOM05D004080 ORTHO05D004855 2.6e-77 292.7 208 75.5
PSO724G0358 Papaver somniferum HOM05D004080 ORTHO05D004855 4.5e-77 292.0 248 66.5
CDE09G1267 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 5.9e-77 291.6 212 75.0
Ca_23429_v3 Cicer arietinum L. HOM05D004080 ORTHO05D004855 5.5e-75 285.0 205 73.2
Glyma.07G045300 Glycine max HOM05D004080 ORTHO05D004855 7.2e-75 284.6 203 75.9
SGA_v2.0_scaffold71G23916 Striga asiatica HOM05D004080 ORTHO05D004855 1.6e-74 283.5 258 65.1
TPR.G18158 Trifolium pratense HOM05D004080 ORTHO05D004855 2.7e-74 282.7 207 73.4
Phvul.010G123700 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 4.7e-74 282.0 203 74.9
Psat4g165760 Pisum sativum HOM05D004080 ORTHO05D004855 7.9e-74 281.2 203 71.9
Medtr8g023040 Medicago truncatula HOM05D004080 ORTHO05D004855 1.8e-73 280.0 203 71.9
Aqoxy7G04172 Aquilegia oxysepala HOM05D004080 ORTHO05D004855 3.0e-73 279.3 191 79.6
SalBow7G2362 Salvia bowleyana HOM05D004080 ORTHO05D004855 3.9e-73 278.9 194 76.8
Lj3g0001023 Lotus japonicus HOM05D004080 ORTHO05D004855 1.4e-70 270.4 203 72.4
ATR0099G064 Amborella trichopoda HOM05D004080 ORTHO05D004855 2.6e-69 266.2 250 62.8
AUR62025622 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.7e-68 263.5 204 71.6
Oeu006748.1 Olea europaea HOM05D004080 ORTHO05D004855 5.5e-67 258.5 247 62.8
BcaB07g33281 Brassica carinata HOM05D004080 ORTHO05D004855 1.0e-65 254.2 224 66.5
Zm00001eb138200 Zea mays HOM05D004080 ORTHO05D004855 1.2e-64 250.8 202 68.3
ECA247G2052 Erigeron canadensis HOM05D004080 ORTHO05D004855 1.5e-64 250.4 179 77.1
Os12g0497400 Oryza sativa ssp. japonica HOM05D004080 ORTHO05D004855 1.1e-62 244.2 231 61.0
Actinidia24431 Actinidia chinensis HOM05D004080 ORTHO05D004855 1.5e-56 223.8 220 60.9
Gohir.A05G141401 Gossypium hirsutum HOM05D004080 ORTHO05D004855 2.6e-56 223.0 171 73.7
BcaC08g46690 Brassica carinata HOM05D004080 ORTHO05D004855 2.2e-55 219.9 256 57.8
Pp3c3_36280 Physcomitrium patens HOM05D004080 ORTHO05D004855 1.4e-54 217.2 188 63.3
Mapoly0002s0094 Marchantia polymorpha HOM05D004080 ORTHO05D004855 3.1e-54 216.1 197 59.9
Pp3c5_19430 Physcomitrium patens HOM05D004080 ORTHO05D004855 2.7e-53 213.0 192 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1526 Anthoceros agrestis HOM05D004080 ORTHO05D004855 4.5e-53 212.2 190 58.9
Pp3c16_17800 Physcomitrium patens HOM05D004080 ORTHO05D004855 2.1e-50 203.4 192 58.3
BcaB02g10878 Brassica carinata HOM05D004080 ORTHO05D004855 2.8e-50 203.0 114 91.2
SMO203G0081 Selaginella moellendorffii HOM05D004080 ORTHO05D004855 6.1e-50 201.8 149 68.5
Oeu033128.1 Olea europaea HOM05D004080 ORTHO05D004855 6.6e-44 181.8 151 68.2
MBI13_g01689_MAGBIO Magnolia biondii HOM05D004080 ORTHO05D004855 2.0e-40 170.2 99 83.8
HPP92_011073 Vanilla planifolia HOM05D004080 ORTHO05D004855 4.9e-39 165.6 98 82.7
Oeu015474.1 Olea europaea HOM05D004080 ORTHO05D004855 8.6e-36 154.8 82 93.9
Gorai.012G178400 Gossypium raimondii HOM05D004080 ORTHO05D004855 7.3e-35 151.8 81 93.8
HPP92_011050 Vanilla planifolia HOM05D004080 ORTHO05D004855 1.2e-32 144.4 176 55.1
Cre16.g687518 Chlamydomonas reinhardtii HOM05D004080 ORTHO05D004855 1.6e-26 124.0 144 47.9
PRCOL_00001985 Prasinoderma coloniale HOM05D004080 ORTHO05D004855 9.2e-22 108.2 136 46.3
Dinv17514 Davidia involucrata HOM05D004080 ORTHO05D004855 3.5e-21 106.3 103 64.1
CDE09G0018 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 3.9e-20 102.8 62 82.3
SEGI_15203 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 4.3e-19 99.4 102 55.9
SEGI_17135 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 9.2e-14 81.6 88 53.4
Nn6g35716 Nelumbo nucifera HOM05D004080 ORTHO05D004855 1.6e-13 80.9 60 65.0


User provided reference genes

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