Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.5e-197 691.0 420 100.0
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.0e-172 607.4 423 87.5
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.2e-113 413.3 422 73.0
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 7.2e-112 408.3 416 72.4
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.6e-111 407.1 416 72.4
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.2e-106 391.0 425 70.4
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 7.0e-91 338.6 426 62.7
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.9e-88 330.5 332 60.2
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 6.5e-73 278.9 401 44.1
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 5.6e-64 249.2 337 50.1
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 4.0e-62 243.0 343 49.6
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.0e-58 230.7 336 48.2
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.3e-57 228.0 420 38.6
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 4.3e-56 223.0 410 43.4
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 5.6e-56 222.6 342 47.7
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.6e-55 221.1 340 47.4
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.1e-55 220.7 342 44.7
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 3.4e-53 213.4 344 46.8
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 7.5e-53 212.2 338 45.9
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.9e-51 207.6 342 44.4
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 7.0e-51 205.7 334 49.1
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 7.8e-50 202.2 339 46.0
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.3e-49 201.4 335 43.0
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.7e-49 201.1 338 47.9
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 3.0e-49 200.3 346 46.8
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 8.6e-49 198.7 335 45.1
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 4.3e-48 196.4 363 44.4
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.6e-47 193.4 325 46.5
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 6.2e-47 192.6 332 45.5
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 5.2e-46 189.5 225 50.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 6.8e-46 189.1 403 39.5
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.5e-45 188.0 342 44.2
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.0e-45 187.6 334 46.7
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 9.9e-45 185.3 340 42.6
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.4e-43 180.6 335 43.9
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.6e-42 177.9 386 39.1
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 4.6e-42 176.4 336 43.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 1.3e-41 174.9 339 41.9
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 2.3e-41 174.1 277 47.3
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 3.9e-41 173.3 333 41.7
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.3e-40 169.9 332 35.8
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 1.6e-39 167.9 328 41.2
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.1e-39 167.5 333 42.9
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 6.2e-39 166.0 330 40.9
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.4e-38 164.9 331 43.5
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.0e-38 163.3 338 35.8
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.0e-38 163.3 346 40.5
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 8.9e-38 162.2 334 43.4
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 8.9e-38 162.2 329 42.2
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 2.0e-37 161.0 321 43.6
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.0e-37 161.0 323 44.6
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 4.4e-37 159.8 373 39.4
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 4.9e-36 156.4 193 48.2
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 8.4e-36 155.6 329 41.3
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 8.4e-36 155.6 344 42.7
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 8.4e-36 155.6 335 34.0
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.2e-35 152.1 425 38.1
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 7.8e-34 149.1 330 39.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 2.3e-33 147.5 336 40.8
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 8.7e-33 145.6 341 42.5
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 8.7e-33 145.6 340 40.6
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 1.5e-32 144.8 374 36.1
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 1.9e-32 144.4 337 39.5
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.9e-32 144.4 342 40.9
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 1.2e-31 141.7 335 40.3
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 2.1e-31 141.0 375 35.7
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 2.8e-31 140.6 334 40.1
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 4.7e-31 139.8 338 34.9
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 3.1e-30 137.1 337 34.4
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.2e-29 135.2 337 39.2
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 2.0e-29 134.4 335 38.8
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 3.4e-29 133.7 327 36.4
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.9e-28 130.6 243 44.4
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 3.8e-28 130.2 329 38.0
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 6.4e-28 129.4 335 38.8
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.4e-27 128.3 291 38.8
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 9.3e-27 125.6 341 33.1
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 1.6e-26 124.8 190 44.2
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 6.6e-25 119.4 330 37.6
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 4.3e-24 116.7 340 29.7
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 7.3e-24 115.9 181 42.0
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.3e-23 115.2 328 29.9
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.8e-23 114.0 196 38.3
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 8.1e-23 112.5 330 37.0
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.4e-22 111.7 328 29.6
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 1.4e-22 111.7 196 39.3
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 6.9e-22 109.4 325 29.2
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 1.2e-21 108.6 324 29.0
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 2.2e-20 104.4 339 28.0
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 3.8e-20 103.6 218 33.9
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 4.9e-20 103.2 340 36.8
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 6.4e-20 102.8 71 63.4
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.4e-19 101.7 319 35.1
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.9e-19 101.3 127 50.4
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 3.2e-19 100.5 68 64.7
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 3.2e-19 100.5 341 34.0
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 5.4e-19 99.8 335 29.3
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 2.7e-18 97.4 332 34.0
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 3.5e-18 97.1 206 34.5
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 4.6e-18 96.7 197 36.0
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 4.6e-18 96.7 198 36.9
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 6.7e-17 92.8 217 40.6
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.1e-16 92.0 179 41.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 1.1e-16 92.0 344 35.8
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.3e-16 90.5 169 41.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 5.6e-16 89.7 122 42.6
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 2.8e-15 87.4 172 36.6
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 4.8e-15 86.7 295 27.5
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.8e-14 84.7 170 41.2
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 9.0e-14 82.4 145 42.1
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 9.0e-14 82.4 174 41.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.2e-12 77.8 149 34.9
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 6.4e-12 76.3 166 33.1
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 6.4e-12 76.3 99 46.5
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 8.4e-12 75.9 195 37.4
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.4e-11 75.1 274 29.6
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 5.5e-11 73.2 110 40.0
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 9.3e-11 72.4 108 38.9
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 6.0e-10 69.7 110 37.3
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 3.0e-09 67.4 73 43.8
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 3.9e-09 67.0 62 48.4
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.1e-08 65.5 132 40.9
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.1e-08 65.5 87 49.4
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 1.1e-08 65.5 106 36.8
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 3.3e-08 63.9 80 40.0
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 7.4e-08 62.8 168 36.9
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 9.6e-08 62.4 74 39.2
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 9.6e-08 62.4 62 51.6
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 9.6e-08 62.4 117 39.3
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 2.1e-07 61.2 74 40.5
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.8e-07 60.8 75 41.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 3.7e-07 60.5 74 47.3
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 4.8e-07 60.1 161 28.0
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 4.8e-07 60.1 127 37.8
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 6.2e-07 59.7 161 27.3
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.4e-06 58.5 43 60.5
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 2.4e-06 57.8 108 33.3
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.4e-06 57.8 47 63.8
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 3.1e-06 57.4 59 54.2
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 3.1e-06 57.4 87 35.6
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 4.0e-06 57.0 113 40.7
CDE04G0657 Ceratophyllum demersum HOM05D001903 ORTHO05D001847 4.0e-06 57.0 122 32.0
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 4.0e-06 57.0 94 37.2
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 5.3e-06 56.6 114 34.2
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 5.3e-06 56.6 180 28.3
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 5.3e-06 56.6 117 32.5
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 5.3e-06 56.6 87 35.6
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 6.9e-06 56.2 146 29.5
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 6.9e-06 56.2 94 37.2
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 6.9e-06 56.2 92 42.4
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 6.9e-06 56.2 80 37.5
CSS0008588 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 9.0e-06 55.8 72 40.3
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 9.0e-06 55.8 112 35.7
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 9.0e-06 55.8 90 42.2


User provided reference genes

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