Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.7e-181 637.5 330 100.0
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.0e-177 624.4 330 96.7
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.2e-170 603.2 330 93.0
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.9e-169 598.6 330 91.5
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 2.9e-169 598.6 330 91.8
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.9e-168 595.9 330 91.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 3.4e-149 531.9 330 83.3
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.1e-147 526.9 330 79.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.6e-141 505.8 325 77.5
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 9.8e-141 503.8 330 75.5
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.3e-140 503.4 330 73.9
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.4e-140 501.1 324 77.5
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.1e-139 498.4 330 74.5
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.6e-138 496.5 329 73.3
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 4.6e-138 495.0 329 74.8
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 6.0e-138 494.6 330 76.4
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.9e-137 491.9 326 75.5
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 2.5e-136 489.2 330 72.1
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 4.3e-136 488.4 329 72.9
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.2e-135 486.9 331 71.9
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.6e-135 486.5 332 73.5
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.1e-135 486.1 329 72.9
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.8e-134 483.0 325 71.1
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.1e-134 482.3 325 72.6
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.0e-134 481.9 329 72.6
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.8e-134 481.1 330 72.7
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.2e-133 480.3 330 70.3
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.5e-133 479.9 327 72.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.0e-133 479.6 332 72.9
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 2.6e-133 479.2 327 70.3
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.6e-133 479.2 329 71.1
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 3.4e-133 478.8 330 71.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.1e-131 473.8 330 71.2
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.4e-131 473.4 327 71.6
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.7e-130 469.2 326 68.4
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.5e-130 468.8 326 68.4
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 3.5e-130 468.8 331 70.7
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 6.0e-130 468.0 329 69.6
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 6.0e-130 468.0 327 70.6
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.7e-129 466.5 332 70.2
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.0e-129 465.7 326 68.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 3.9e-129 465.3 333 70.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.9e-129 465.3 333 70.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.9e-128 463.0 330 69.1
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-128 463.0 326 67.8
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.5e-128 462.6 326 69.0
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.3e-128 462.2 324 68.8
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 4.3e-128 461.8 327 70.3
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.6e-128 461.5 333 69.4
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 7.3e-128 461.1 331 67.1
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 9.5e-128 460.7 325 68.6
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 1.2e-127 460.3 337 68.8
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.6e-127 459.9 330 69.4
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 2.1e-127 459.5 327 69.7
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 4.7e-127 458.4 332 70.2
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 8.1e-127 457.6 327 71.3
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 1.4e-126 456.8 326 68.4
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 1.4e-126 456.8 327 68.8
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 5.2e-126 454.9 323 68.4
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 5.2e-126 454.9 327 68.8
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.2e-125 453.8 332 68.4
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.5e-125 453.4 328 67.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.0e-125 453.0 330 67.9
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.8e-125 451.4 330 67.9
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 7.6e-125 451.1 323 68.4
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.7e-124 449.9 330 67.6
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 3.8e-124 448.7 325 66.5
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.1e-123 447.2 323 67.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-123 446.8 327 67.9
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.9e-123 446.4 325 67.4
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.4e-123 444.9 326 67.8
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 5.4e-123 444.9 324 68.2
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-122 443.7 374 61.5
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 1.6e-122 443.4 327 67.3
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 4.6e-122 441.8 324 67.0
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.0e-121 439.1 326 65.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.9e-121 438.7 330 65.5
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 6.6e-121 438.0 329 67.8
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 4.3e-120 435.3 327 66.1
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.3e-120 434.5 326 64.1
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 7.6e-117 424.5 321 66.0
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 9.9e-117 424.1 328 64.3
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.3e-116 423.7 328 64.3
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.3e-116 423.7 328 65.9
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.2e-116 422.9 328 64.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.1e-115 420.6 328 64.3
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.1e-115 420.6 326 64.7
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.1e-115 420.6 420 56.9
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 2.4e-115 419.5 326 64.1
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 2.1e-114 416.4 312 65.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 3.5e-114 415.6 328 63.1
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 4.6e-114 415.2 329 63.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.0e-113 414.1 328 63.1
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.3e-113 413.7 328 63.1
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 6.6e-113 411.4 310 66.1
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 6.6e-113 411.4 328 63.1
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 8.7e-113 411.0 329 63.2
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 4.0e-110 402.1 282 71.3
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 6.9e-110 401.4 327 61.5
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 9.0e-110 401.0 297 66.7
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-109 400.6 327 61.5
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.2e-109 400.6 308 63.3
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 7.6e-109 397.9 325 61.2
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.3e-108 397.1 327 61.2
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.2e-108 396.4 326 61.3
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 4.9e-108 395.2 328 61.0
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 7.1e-107 391.3 379 55.9
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.1e-106 389.8 548 42.3
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 4.3e-104 382.1 269 71.0
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-103 380.2 293 63.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 3.1e-102 375.9 326 58.6
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.6e-101 372.9 257 71.6
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 4.9e-100 368.6 327 58.7
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 6.5e-100 368.2 327 59.6
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-99 367.5 327 58.7
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.0e-98 361.7 326 56.7
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.2e-92 343.2 329 55.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 5.5e-91 338.6 688 34.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 5.1e-89 332.0 292 58.9
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 2.6e-85 319.7 225 72.0
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 2.6e-85 319.7 274 60.6
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 6.5e-84 315.1 268 59.7
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 1.1e-83 314.3 230 64.8
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 4.2e-83 312.4 313 50.2
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.6e-82 308.9 310 47.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.7e-81 305.1 310 46.5
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.8e-79 298.9 202 72.8
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 5.9e-77 292.0 259 57.9
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 2.1e-74 283.5 314 47.5
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 2.4e-70 270.0 180 75.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 2.1e-66 256.9 224 58.5
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 4.1e-54 216.1 305 38.0
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 8.9e-41 171.8 194 43.3
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 2.1e-34 150.6 96 77.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.0e-33 148.3 115 65.2
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 9.2e-30 135.2 119 60.5
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.6e-29 134.4 115 61.7
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 5.0e-28 129.4 75 78.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 6.6e-28 129.0 86 70.9
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 8.6e-28 128.6 84 79.8
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.3e-25 120.6 98 62.2
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.0e-25 119.8 98 62.2
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 7.8e-21 105.5 330 28.2
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.9e-15 87.0 86 52.3
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 7.1e-14 82.4 69 59.4
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 3.6e-10 70.1 54 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 8.1e-10 68.9 69 52.2
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 3.1e-09 67.0 56 57.1
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.9e-09 65.5 43 69.8


User provided reference genes

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