Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 7.1e-170 600.5 302 100.0
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.2e-161 573.2 302 94.7
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.8e-147 525.0 305 86.6
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 9.3e-146 520.4 305 85.2
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 6.9e-141 504.2 305 82.3
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.4e-138 496.5 272 90.8
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 7.1e-138 494.2 305 81.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.5e-130 469.2 303 77.2
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.3e-128 463.4 303 75.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 4.1e-125 451.8 311 74.0
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 5.9e-124 448.0 306 74.5
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 7.7e-124 447.6 303 73.3
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 8.5e-123 444.1 303 72.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.9e-122 443.0 304 73.0
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 3.2e-122 442.2 325 69.5
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.4e-120 436.8 303 69.3
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.5e-119 433.3 303 70.6
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.5e-119 432.6 309 70.6
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 1.3e-118 430.3 303 69.0
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.1e-117 427.2 308 70.1
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 3.1e-117 425.6 303 69.3
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.3e-117 424.9 304 67.4
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.0e-116 422.9 306 68.3
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.4e-116 422.2 303 66.7
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 5.9e-116 421.4 312 67.9
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 5.9e-116 421.4 303 66.3
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.2e-115 419.5 306 68.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.9e-115 419.1 303 67.3
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 3.8e-115 418.7 302 66.6
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.2e-113 413.7 302 65.9
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.6e-113 412.1 305 66.2
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 3.0e-112 409.1 272 72.1
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 3.0e-112 409.1 305 64.9
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.1e-112 408.3 303 65.3
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 6.7e-112 407.9 303 64.7
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 8.8e-112 407.5 306 65.7
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 1.1e-111 407.1 303 66.7
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 2.6e-111 406.0 303 66.0
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 7.4e-111 404.4 302 65.2
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.4e-111 404.4 302 64.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 9.7e-111 404.1 353 60.1
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 2.2e-110 402.9 307 64.2
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 2.8e-110 402.5 272 71.0
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 4.8e-110 401.7 303 65.3
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 4.8e-110 401.7 302 63.9
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 6.3e-110 401.4 300 68.3
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 8.2e-110 401.0 272 73.9
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 8.2e-110 401.0 303 64.7
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.8e-109 399.8 302 64.6
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.4e-109 399.4 317 61.8
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 2.4e-109 399.4 302 63.2
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.1e-109 398.7 303 65.7
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 5.3e-109 398.3 306 65.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 5.3e-109 398.3 301 64.5
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 7.0e-109 397.9 303 66.3
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.5e-108 396.7 302 63.9
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.0e-108 396.4 313 64.2
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.0e-107 394.0 302 65.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.3e-107 393.7 304 64.1
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.2e-105 387.1 303 62.0
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.6e-105 386.7 299 63.2
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.1e-105 386.3 302 62.3
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 2.1e-105 386.3 302 62.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.7e-105 386.0 299 63.2
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 6.1e-105 384.8 302 63.2
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 6.1e-105 384.8 304 60.9
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.8e-104 383.3 316 61.7
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 4.0e-104 382.1 304 65.1
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 2.6e-103 379.4 306 60.8
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.2e-102 376.3 273 65.9
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 4.8e-102 375.2 267 67.4
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.4e-101 372.9 262 67.2
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 5.3e-101 371.7 304 62.5
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.0e-101 371.3 302 60.6
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 7.0e-101 371.3 302 62.9
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 2.6e-100 369.4 302 59.9
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 2.6e-100 369.4 272 68.4
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 7.7e-100 367.9 302 60.9
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 5.0e-99 365.2 240 75.0
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 8.5e-99 364.4 302 60.6
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 5.5e-98 361.7 313 57.8
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.1e-97 359.8 283 60.4
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-96 357.5 275 64.4
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 1.7e-94 350.1 324 54.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 6.3e-94 348.2 302 59.6
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 5.4e-93 345.1 324 54.6
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.1e-93 344.4 304 57.9
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.9e-92 341.7 233 76.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.0e-91 340.9 302 58.6
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.3e-91 340.5 302 58.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 5.0e-91 338.6 266 59.8
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 6.5e-91 338.2 302 57.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 8.5e-91 337.8 302 58.3
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 2.5e-90 336.3 302 57.9
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 3.2e-90 335.9 302 57.6
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 3.2e-90 335.9 302 57.6
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.2e-90 335.9 302 57.9
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 7.2e-90 334.7 302 56.3
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.6e-89 332.4 302 57.3
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.6e-89 332.4 302 57.3
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 6.1e-89 331.6 302 56.3
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.3e-88 329.7 272 61.8
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 8.8e-88 327.8 302 57.0
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.5e-87 327.0 302 57.0
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.0e-87 326.6 303 55.8
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 2.6e-87 326.2 302 56.6
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.6e-87 326.2 302 56.6
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 2.6e-87 326.2 302 57.0
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 3.4e-87 325.9 240 67.1
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.4e-85 320.5 253 60.1
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 9.1e-85 317.8 275 58.9
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 9.1e-85 317.8 303 55.8
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 8.6e-83 311.2 265 59.2
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.2e-81 307.4 260 58.5
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 1.0e-80 304.3 240 64.2
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 7.5e-79 298.1 271 56.1
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 3.2e-77 292.7 303 51.5
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 8.0e-73 278.1 307 47.9
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 4.0e-72 275.8 273 49.8
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 7.5e-71 271.6 317 44.8
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 7.5e-71 271.6 299 46.5
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 2.0e-63 246.9 191 62.3
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.7e-51 207.2 191 54.5
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.8e-49 199.9 169 58.6
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 4.0e-48 196.1 192 54.7
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.5e-42 176.8 137 62.8
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 9.0e-40 168.3 278 39.2
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 7.9e-36 155.2 109 64.2
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.9e-34 150.6 112 66.1
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 4.8e-25 119.4 113 55.8
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 5.1e-11 72.8 78 55.1
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 4.3e-10 69.7 249 28.1


User provided reference genes

Program Settings