Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 4.6e-164 581.3 311 100.0
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 4.7e-145 518.1 311 87.5
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 9.3e-133 477.2 312 82.4
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 2.3e-131 472.6 312 80.8
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 3.9e-131 471.9 312 80.4
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.3e-123 446.8 311 77.8
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 1.9e-117 426.4 308 76.3
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.7e-105 386.7 310 67.7
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.4e-99 367.1 314 65.0
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 3.0e-99 365.9 218 81.7
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 5.1e-99 365.2 318 61.0
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 4.4e-98 362.1 313 62.9
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.7e-97 360.1 313 62.3
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 2.8e-97 359.4 312 62.8
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 6.3e-97 358.2 228 75.4
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.1e-96 357.5 311 62.1
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 1.4e-96 357.1 310 63.2
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 1.4e-96 357.1 312 60.6
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 2.4e-96 356.3 316 62.7
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 2.4e-96 356.3 286 64.0
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 4.1e-96 355.5 287 64.8
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 9.1e-96 354.4 310 62.6
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 1.2e-95 354.0 226 74.8
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.6e-95 352.8 314 63.1
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 3.5e-95 352.4 309 64.4
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.5e-95 352.4 244 72.1
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 4.5e-95 352.1 244 72.1
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 4.5e-95 352.1 243 72.0
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 5.9e-95 351.7 237 72.6
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 5.9e-95 351.7 311 61.1
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 7.7e-95 351.3 317 60.6
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 1.0e-94 350.9 311 60.5
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 2.2e-94 349.7 280 66.1
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 2.2e-94 349.7 241 72.6
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 2.9e-94 349.4 242 71.1
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 3.8e-94 349.0 310 60.6
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.1e-93 347.4 319 59.6
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 1.1e-93 347.4 315 59.7
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.9e-93 346.7 220 75.5
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.5e-93 346.3 312 60.6
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 3.2e-93 345.9 225 76.0
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 5.5e-93 345.1 243 70.8
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 7.2e-93 344.7 322 57.5
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 9.4e-93 344.4 313 59.4
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 1.6e-92 343.6 220 75.5
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.6e-92 343.6 220 74.5
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.7e-92 342.8 243 70.8
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 4.7e-92 342.0 315 61.6
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 4.7e-92 342.0 341 58.7
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 6.1e-92 341.7 223 75.3
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 8.0e-92 341.3 313 59.7
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 2.3e-91 339.7 318 61.6
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 3.9e-91 339.0 318 59.7
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 3.9e-91 339.0 311 59.5
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 6.7e-91 338.2 310 60.3
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 6.7e-91 338.2 223 74.4
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 1.5e-90 337.0 311 59.2
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 2.6e-90 336.3 311 59.2
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 3.3e-90 335.9 250 68.8
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 5.7e-90 335.1 245 69.8
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 7.4e-90 334.7 238 69.3
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.3e-89 334.0 241 67.2
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 1.3e-89 334.0 313 58.8
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 2.2e-89 333.2 201 79.1
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 2.8e-89 332.8 239 69.0
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 2.8e-89 332.8 314 58.3
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 3.7e-89 332.4 318 59.1
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 4.8e-89 332.0 313 60.1
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 4.8e-89 332.0 312 59.0
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 6.3e-89 331.6 311 58.8
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 6.3e-89 331.6 314 58.6
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 6.3e-89 331.6 233 70.0
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 1.1e-88 330.9 320 59.4
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 1.4e-88 330.5 243 68.7
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 2.4e-88 329.7 232 69.8
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 3.1e-88 329.3 312 58.3
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 7.0e-88 328.2 310 57.4
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 7.0e-88 328.2 328 55.5
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.2e-87 327.4 243 68.7
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 3.5e-87 325.9 291 60.8
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 5.9e-87 325.1 249 65.9
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 7.7e-87 324.7 219 70.8
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 1.3e-86 323.9 308 57.8
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 1.3e-86 323.9 308 57.8
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 1.7e-86 323.6 218 70.2
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 2.2e-86 323.2 217 70.5
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 2.9e-86 322.8 307 60.6
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 3.8e-86 322.4 307 58.0
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 6.5e-86 321.6 212 72.6
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 6.5e-86 321.6 318 56.9
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 1.1e-85 320.9 212 72.6
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.5e-85 320.5 202 76.7
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 4.2e-85 318.9 310 56.1
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.6e-84 317.0 311 56.6
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 2.1e-84 316.6 226 67.3
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 2.7e-84 316.2 225 68.9
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 6.1e-84 315.1 292 57.9
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 8.0e-84 314.7 217 70.5
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 1.4e-83 313.9 217 69.6
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 6.8e-83 311.6 297 59.9
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 7.5e-82 308.1 245 65.3
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.3e-81 307.4 216 70.4
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 2.2e-81 306.6 224 66.1
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 4.8e-81 305.4 232 62.9
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 4.8e-81 305.4 210 70.5
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 6.3e-81 305.1 304 56.6
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 6.3e-81 305.1 241 63.9
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 4.2e-77 292.4 296 55.4
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 8.8e-75 284.6 246 61.0
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 8.8e-75 284.6 222 62.6
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 2.9e-70 269.6 209 59.8
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 1.1e-69 267.7 277 56.3
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 4.1e-64 249.2 256 53.5
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 5.4e-64 248.8 258 54.7
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 9.2e-64 248.1 232 53.4
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 2.7e-63 246.5 243 56.0
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 5.0e-62 242.3 200 62.0
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.8e-59 233.8 183 63.9
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 8.9e-59 231.5 191 62.8
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 8.6e-46 188.3 167 55.1
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 1.9e-45 187.2 109 80.7
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 6.4e-41 172.2 167 54.5
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 4.6e-39 166.0 144 56.9
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 4.3e-37 159.5 168 47.0
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 1.5e-34 151.0 83 80.7
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 2.0e-34 150.6 83 81.9
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 6.0e-31 139.0 207 36.7
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 3.0e-30 136.7 135 55.6
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-28 131.0 113 61.1
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 2.1e-28 130.6 125 52.8
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 1.8e-27 127.5 68 82.4
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 8.4e-25 118.6 150 38.0
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 7.1e-24 115.5 199 32.7
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 9.0e-19 98.6 120 49.2
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 7.6e-18 95.5 149 44.3
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 2.4e-16 90.5 57 70.2
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 2.8e-12 77.0 83 50.6
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.6e-10 70.5 142 35.9
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 3.8e-09 66.6 67 56.7
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 3.8e-09 66.6 133 37.6
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 1.4e-08 64.7 37 81.1
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 5.5e-08 62.8 31 83.9
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 5.5e-08 62.8 35 82.9
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 3.9e-06 56.6 28 82.1


User provided reference genes

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