Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 8.8e-66 253.4 126 100.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.3e-58 228.8 126 92.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 2.1e-43 179.1 122 80.3
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.4e-39 165.6 123 75.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.1e-38 162.5 117 77.8
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.6e-38 161.4 123 74.8
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 3.6e-35 151.8 111 74.8
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 3.6e-35 151.8 111 74.8
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.1e-34 150.2 111 73.9
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.8e-34 149.4 120 68.3
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.0e-34 148.3 122 69.7
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.9e-29 131.7 103 74.8
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.6e-28 127.9 117 63.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.2e-27 126.7 101 74.3
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.0e-25 119.4 106 64.2
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 5.8e-25 117.9 109 64.2
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.4e-23 113.2 106 59.4
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 3.2e-23 112.1 108 62.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.3e-21 106.7 106 57.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.3e-21 106.7 103 57.3
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.3e-21 105.9 110 54.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 3.0e-21 105.5 121 50.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 6.6e-21 104.4 114 54.4
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 6.6e-21 104.4 113 56.6
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.5e-20 102.4 107 52.3
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.3e-19 100.1 103 54.4
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 2.8e-19 99.0 117 49.6
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.4e-18 95.9 114 55.3
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.4e-18 95.9 115 51.3
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.0e-18 95.1 106 52.8
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 4.0e-18 95.1 97 58.8
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 5.3e-18 94.7 100 56.0
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.0e-18 94.0 101 52.5
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.0e-18 94.0 101 52.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 1.5e-17 93.2 118 49.2
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.0e-17 92.8 116 49.1
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.0e-17 92.8 116 49.1
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.0e-17 92.8 118 49.2
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.0e-17 92.8 101 51.5
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.4e-17 92.0 98 56.1
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 3.4e-17 92.0 111 50.5
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.4e-17 92.0 115 49.6
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 5.8e-17 91.3 106 51.9
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 7.6e-17 90.9 101 51.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 7.6e-17 90.9 93 55.9
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.3e-16 90.1 100 52.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.2e-16 89.4 108 45.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 3.8e-16 88.6 98 52.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 3.8e-16 88.6 100 52.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 6.4e-16 87.8 99 54.5
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 6.4e-16 87.8 97 51.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 6.4e-16 87.8 100 53.0
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 6.4e-16 87.8 115 50.4
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.4e-16 87.8 89 53.9
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 8.4e-16 87.4 100 49.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 8.4e-16 87.4 100 53.0
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 8.4e-16 87.4 105 50.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.1e-15 87.0 114 46.5
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.4e-15 86.7 99 50.5
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.4e-15 86.7 103 50.5
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-15 86.7 98 48.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-15 86.7 98 48.0
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.4e-15 86.7 101 50.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.4e-15 86.7 119 47.1
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.4e-15 86.7 118 47.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.9e-15 86.3 107 48.6
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.9e-15 86.3 113 50.4
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.9e-15 86.3 89 56.2
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 4.2e-15 85.1 103 48.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 4.2e-15 85.1 96 50.0
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 5.4e-15 84.7 94 51.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.2e-14 83.6 115 47.8
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.6e-14 83.2 107 45.8
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-14 83.2 94 53.2
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.7e-14 82.4 93 50.5
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.7e-14 82.4 96 47.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.7e-14 82.4 104 51.9
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.7e-14 82.4 94 54.3
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.7e-14 82.4 115 47.8
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.7e-14 82.4 99 50.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-14 82.4 100 49.0
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 3.5e-14 82.0 100 51.0
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.5e-14 82.0 96 51.0
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 4.6e-14 81.6 106 49.1
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.6e-14 81.6 92 52.2
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.9e-14 80.9 94 55.3
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.9e-14 80.9 90 50.0
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.3e-13 80.1 115 47.0
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.3e-13 80.1 104 50.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.3e-13 80.1 88 58.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-13 79.7 112 46.4
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.7e-13 79.7 90 48.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.3e-13 79.3 110 50.0
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.0e-13 79.0 98 48.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 3.0e-13 79.0 101 50.5
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.9e-13 78.6 99 48.5
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 6.6e-13 77.8 96 51.0
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 6.6e-13 77.8 106 51.9
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 8.7e-13 77.4 106 48.1
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.1e-12 77.0 99 47.5
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-12 76.6 90 48.9
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.5e-12 76.6 96 46.9
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.5e-12 75.9 96 46.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.5e-12 75.9 99 48.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.3e-12 75.5 103 46.6
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.3e-12 75.5 101 45.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 5.6e-12 74.7 108 41.7
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 7.4e-12 74.3 118 44.1
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.3e-11 73.6 82 48.8
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.3e-11 73.6 116 40.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.3e-11 73.6 89 52.8
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.1e-11 72.8 112 44.6
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.1e-11 72.8 98 46.9
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.8e-11 72.4 99 48.5
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.6e-11 72.0 98 44.9
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.6e-11 72.0 116 44.0
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.6e-11 72.0 89 52.8
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.8e-11 71.6 105 44.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.8e-11 71.6 96 46.9
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 6.2e-11 71.2 108 40.7
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 6.2e-11 71.2 100 42.0
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 8.1e-11 70.9 108 40.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 8.1e-11 70.9 108 39.8
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.1e-10 70.5 101 43.6
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-10 70.1 108 40.7
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.4e-10 70.1 102 46.1
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 4.0e-10 68.6 110 43.6
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.0e-10 68.6 122 40.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.0e-10 68.6 122 40.2
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.0e-10 68.6 89 48.3
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.3e-10 68.2 100 47.0
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 6.9e-10 67.8 108 39.8
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 6.9e-10 67.8 108 39.8
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 6.9e-10 67.8 108 39.8
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.9e-10 67.8 101 41.6
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 9.0e-10 67.4 85 48.2
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 9.0e-10 67.4 102 43.1
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 1.2e-09 67.0 104 44.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.5e-09 66.6 100 46.0
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.5e-09 66.6 115 40.9
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.5e-09 66.6 101 43.6
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.6e-09 65.9 96 43.8
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.6e-09 65.9 102 46.1
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.6e-09 65.9 105 45.7
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.4e-09 65.5 93 46.2
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 3.4e-09 65.5 51 70.6
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 4.5e-09 65.1 96 43.8
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.5e-09 65.1 103 46.6
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.8e-09 64.7 102 41.2
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.8e-09 64.7 109 42.2
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 5.8e-09 64.7 102 43.1
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 9.9e-09 63.9 96 41.7
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.3e-08 63.5 102 43.1
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-08 63.5 96 42.7
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-08 63.5 102 42.2
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-08 63.5 102 42.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.7e-08 63.2 102 42.2
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.9e-08 62.4 102 42.2
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 3.8e-08 62.0 85 47.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 4.9e-08 61.6 102 41.2
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 6.4e-08 61.2 102 43.1
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.1e-07 60.5 100 40.0
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.4e-07 60.1 96 39.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.9e-07 59.7 93 41.9
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 2.4e-07 59.3 81 46.9
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.2e-07 58.9 104 41.3
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.5e-07 58.2 105 43.8
ATR0680G398 Amborella trichopoda HOM05D003940 ORTHO05D004461 1.6e-06 56.6 90 43.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.6e-06 56.6 105 41.0
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-06 56.6 94 39.4
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.6e-06 56.6 94 39.4
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.1e-06 56.2 83 42.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.7e-06 55.8 105 41.0
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 7.9e-06 54.3 109 33.0


User provided reference genes

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