Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 6.3e-127 457.6 259 100.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.2e-98 363.6 266 81.6
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.1e-97 360.5 266 80.5
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 5.2e-97 358.2 266 80.5
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 8.1e-90 334.3 266 77.1
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 1.9e-83 313.2 266 74.8
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 4.3e-75 285.4 260 66.2
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 5.6e-75 285.0 261 64.8
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 1.4e-73 280.4 250 62.8
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 8.4e-71 271.2 265 58.9
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.2e-69 267.3 237 58.6
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.6e-69 266.9 261 63.6
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 3.5e-69 265.8 255 55.3
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 4.6e-69 265.4 266 56.4
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 7.9e-69 264.6 254 56.3
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.0e-68 264.2 251 55.8
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.3e-68 263.8 252 56.0
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 1.8e-68 263.5 250 63.6
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.0e-68 262.7 267 60.7
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 8.7e-68 261.2 252 58.3
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 1.3e-66 257.3 260 53.8
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.8e-66 256.1 252 55.6
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 3.7e-66 255.8 268 56.0
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 3.7e-66 255.8 264 55.3
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 8.2e-66 254.6 252 62.7
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.1e-65 254.2 255 56.1
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 2.4e-65 253.1 262 54.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 4.0e-65 252.3 252 55.6
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 5.3e-65 251.9 237 59.9
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 4.5e-64 248.8 258 55.8
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 7.6e-64 248.1 237 54.9
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 7.6e-64 248.1 268 54.1
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.3e-63 247.3 256 56.6
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.7e-63 246.9 252 57.1
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 2.9e-63 246.1 260 56.5
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 6.5e-63 245.0 252 57.1
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 1.1e-62 244.2 258 54.3
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.1e-62 244.2 255 57.6
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.1e-62 244.2 251 60.2
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.4e-62 243.8 252 61.5
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 4.2e-62 242.3 258 53.5
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.6e-61 240.4 256 52.7
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 4.6e-61 238.8 258 60.5
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 6.0e-61 238.4 252 55.6
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 7.9e-61 238.0 253 57.3
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.3e-60 237.3 254 56.7
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.3e-60 236.5 255 56.1
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 5.1e-60 235.3 236 59.3
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.3e-59 232.6 254 55.5
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 7.4e-59 231.5 252 54.0
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 7.4e-59 231.5 252 54.0
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 7.4e-59 231.5 261 58.2
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.6e-58 230.3 256 56.6
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 2.2e-58 229.9 265 52.5
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 3.7e-58 229.2 252 52.0
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.1e-57 227.6 254 56.3
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.1e-57 227.6 252 52.8
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.4e-57 227.3 260 57.7
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 4.1e-57 225.7 196 69.4
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 5.3e-57 225.3 252 57.1
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 5.3e-57 225.3 255 51.4
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.2e-56 224.2 252 57.9
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.6e-56 223.0 243 56.4
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 3.4e-56 222.6 207 54.6
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 3.4e-56 222.6 255 51.4
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 4.5e-56 222.2 252 52.0
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 7.7e-56 221.5 255 52.9
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.0e-55 221.1 250 57.2
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.3e-55 220.7 263 47.9
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 3.8e-55 219.2 252 56.3
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 5.0e-55 218.8 252 56.0
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 5.0e-55 218.8 256 47.7
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 6.5e-55 218.4 252 56.3
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 8.5e-55 218.0 252 56.3
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 8.5e-55 218.0 252 56.3
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 8.5e-55 218.0 252 56.3
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.4e-54 217.2 252 56.7
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.9e-54 216.9 258 49.2
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 2.5e-54 216.5 252 56.3
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 2.5e-54 216.5 252 56.0
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 9.4e-54 214.5 254 55.5
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.2e-53 214.2 265 56.6
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.7e-53 213.0 254 49.6
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 3.6e-53 212.6 252 56.3
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.8e-52 210.3 233 53.6
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.8e-52 210.3 237 52.3
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.3e-51 206.1 259 50.6
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 4.3e-51 205.7 209 53.6
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.2e-50 203.4 240 58.3
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 3.7e-50 202.6 259 52.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 6.3e-50 201.8 259 50.2
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 2.4e-49 199.9 365 43.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 3.1e-49 199.5 210 57.6
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 2.6e-48 196.4 239 48.5
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 5.9e-48 195.3 234 53.4
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 4.2e-46 189.1 267 46.4
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.7e-45 185.7 259 45.2
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.6e-43 179.9 142 67.6
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 2.9e-39 166.4 236 43.2
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 5.0e-39 165.6 236 43.6
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 5.0e-39 165.6 241 42.3
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.9e-38 163.7 142 60.6
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.1e-37 160.2 161 53.4
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 6.1e-37 158.7 238 39.5
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-36 156.8 240 40.4
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.3e-36 156.8 240 40.4
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.5e-35 154.1 240 40.0
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 3.1e-33 146.4 264 38.3
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 5.3e-33 145.6 251 43.4
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.6e-32 143.3 147 49.7
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 7.2e-30 135.2 147 47.6
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 7.2e-30 135.2 147 47.6
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 7.2e-30 135.2 176 44.3
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 4.7e-29 132.5 262 34.7
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 8.0e-29 131.7 250 41.6
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 2.3e-28 130.2 140 50.7
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 2.0e-27 127.1 247 42.9
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 6.3e-26 122.1 134 51.5
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.2e-21 107.8 238 31.9
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 2.6e-19 100.1 238 31.9
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 4.4e-19 99.4 241 32.0
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.8e-17 94.0 86 54.7
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 9.8e-11 71.6 168 29.8
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-10 71.2 134 35.1
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-10 71.2 134 35.1
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-10 70.9 134 35.1
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 1.7e-10 70.9 40 80.0
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 6.3e-10 68.9 134 34.3
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 6.3e-10 68.9 134 34.3
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 5.4e-09 65.9 48 54.2
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 9.2e-09 65.1 87 48.3
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.2e-08 64.7 170 31.2
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 4.5e-08 62.8 57 54.4
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 8.6e-07 58.5 47 61.7
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 58.2 35 74.3
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 58.2 35 74.3
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 58.2 35 74.3
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 58.2 35 74.3
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.1e-06 58.2 35 74.3
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 3.3e-06 56.6 35 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 4.3e-06 56.2 176 30.1


User provided reference genes

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