Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.8e-131 470.7 243 100.0
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.6e-106 387.5 261 82.8
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 4.6e-87 325.1 296 63.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.9e-86 322.0 292 64.7
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.9e-85 319.7 298 63.8
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.3e-81 307.0 299 62.5
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.2e-74 283.9 291 57.4
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 8.4e-73 277.7 293 57.7
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.4e-72 276.9 293 58.0
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 9.3e-72 274.2 296 56.1
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-71 273.9 293 57.3
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 7.9e-71 271.2 294 55.4
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.9e-70 268.9 166 84.9
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 5.1e-70 268.5 292 56.5
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 9.7e-69 264.2 166 84.3
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.3e-68 263.8 166 81.9
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.3e-68 263.8 293 56.7
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.2e-68 263.1 166 82.5
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.8e-68 261.9 166 83.1
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.8e-67 260.0 166 83.1
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.4e-67 259.6 166 81.9
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.1e-67 259.2 166 80.7
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.3e-67 258.5 166 80.7
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.3e-67 258.5 166 80.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 5.3e-67 258.5 166 79.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 6.9e-67 258.1 166 80.7
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 6.9e-67 258.1 166 81.3
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.5e-66 256.9 166 80.1
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.0e-66 256.5 166 80.7
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 2.0e-66 256.5 166 80.7
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 5.9e-66 255.0 166 78.9
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 5.9e-66 255.0 166 80.1
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.9e-66 255.0 166 80.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.7e-66 254.6 166 81.3
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.0e-65 254.2 166 79.5
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.0e-65 254.2 166 79.5
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 1.0e-65 254.2 166 78.9
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.0e-65 254.2 166 81.3
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 2.2e-65 253.1 195 68.2
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.2e-65 253.1 166 80.1
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.2e-65 253.1 166 80.1
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.9e-65 252.7 166 79.5
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 5.0e-65 251.9 166 79.5
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 5.0e-65 251.9 167 78.4
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 5.0e-65 251.9 167 77.2
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 5.0e-65 251.9 166 78.3
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 6.5e-65 251.5 166 78.3
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 6.5e-65 251.5 166 79.5
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 8.5e-65 251.1 166 77.7
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 8.5e-65 251.1 166 77.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 8.5e-65 251.1 166 78.3
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.5e-65 251.1 166 79.5
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.1e-64 250.8 166 77.7
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.1e-64 250.8 166 77.7
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.1e-64 250.8 166 77.1
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.1e-64 250.8 166 79.5
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.9e-64 250.0 166 79.5
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.9e-64 250.0 166 79.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.9e-64 250.0 166 77.7
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.9e-64 250.0 165 78.8
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.5e-64 249.6 166 77.7
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.5e-64 249.6 166 80.1
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.5e-64 249.6 166 77.7
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 3.2e-64 249.2 166 78.3
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.2e-64 249.2 166 78.9
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 4.2e-64 248.8 166 78.3
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.2e-64 248.8 165 78.2
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 5.5e-64 248.4 166 79.5
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 5.5e-64 248.4 167 77.2
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 5.5e-64 248.4 167 76.0
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 5.5e-64 248.4 166 78.9
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 7.2e-64 248.1 166 77.7
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 7.2e-64 248.1 166 75.3
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 7.2e-64 248.1 166 75.3
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.2e-63 247.3 167 77.8
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.2e-63 247.3 166 79.5
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.6e-63 246.9 168 79.8
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.6e-63 246.9 166 78.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.6e-63 246.9 166 78.3
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.6e-63 246.9 166 74.7
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.1e-63 246.5 166 78.3
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.7e-63 246.1 166 78.3
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 2.7e-63 246.1 194 70.6
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.6e-63 245.7 166 77.7
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 3.6e-63 245.7 167 77.2
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 4.6e-63 245.4 166 77.1
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 4.6e-63 245.4 166 75.3
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 6.1e-63 245.0 166 77.7
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 6.1e-63 245.0 166 77.1
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 7.9e-63 244.6 166 77.1
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 7.9e-63 244.6 167 74.9
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.0e-62 244.2 166 77.1
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.0e-62 244.2 166 74.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.0e-62 244.2 166 76.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.0e-62 244.2 166 76.5
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.0e-62 244.2 167 74.9
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.4e-62 243.8 166 78.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.4e-62 243.8 166 77.7
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.4e-62 243.8 165 77.0
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.8e-62 243.4 166 76.5
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.3e-62 243.0 167 77.2
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 2.3e-62 243.0 166 78.3
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.0e-62 242.7 166 76.5
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 5.1e-62 241.9 167 77.2
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 5.1e-62 241.9 167 77.2
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 5.1e-62 241.9 167 77.2
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 5.1e-62 241.9 167 77.2
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 5.1e-62 241.9 167 73.7
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 6.7e-62 241.5 166 77.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 6.7e-62 241.5 166 76.5
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 6.7e-62 241.5 167 77.2
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.1e-61 240.7 166 74.7
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 2.0e-61 240.0 166 76.5
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 2.5e-61 239.6 166 77.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.7e-60 236.9 166 74.1
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.7e-60 236.9 167 73.1
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.2e-60 236.5 189 69.3
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 3.7e-60 235.7 166 74.7
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.0e-58 229.9 166 72.9
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.5e-58 228.8 166 72.9
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.3e-57 227.3 166 72.3
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.2e-57 226.5 166 73.5
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.9e-57 226.1 166 72.3
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 6.5e-57 224.9 166 71.7
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.2e-56 221.5 166 69.9
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 9.4e-56 221.1 166 68.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.4e-51 207.2 166 66.9
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-51 205.3 166 68.1
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.5e-50 202.2 166 66.9
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.8e-49 199.1 166 65.1
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.8e-49 199.1 166 65.1
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 2.1e-47 193.4 168 64.3
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.3e-44 184.1 165 59.4
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 3.7e-44 182.6 261 45.6
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 2.4e-43 179.9 127 78.0
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.1e-43 179.1 166 62.7
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.3e-43 178.7 166 62.7
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 7.0e-43 178.3 167 59.3
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 2.6e-42 176.4 169 58.6
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.6e-37 159.8 105 81.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 4.4e-37 159.1 105 79.0
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 8.3e-36 154.8 131 64.1
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.9e-34 148.7 105 76.2
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 5.0e-33 145.6 161 51.6
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.2e-32 142.9 107 72.9
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.6e-31 140.6 111 71.2
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 7.0e-27 125.2 106 63.2
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.5e-24 117.5 62 90.3
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.7e-21 105.5 62 80.6
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 4.9e-20 102.4 223 34.1
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.6e-17 91.7 189 36.5
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.2e-15 87.8 178 35.4
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 5.4e-11 72.4 214 30.8
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.7e-10 70.1 178 35.4
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.3e-09 67.8 57 68.4
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 5.0e-09 65.9 35 82.9
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.2e-07 58.9 50 60.0


User provided reference genes

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