Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.2e-68 261.5 126 100.0
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.7e-67 258.5 126 98.4
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 3.7e-64 248.1 126 95.2
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 4.1e-63 244.6 126 92.9
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 4.1e-63 244.6 126 92.9
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 91.3
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 90.5
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 90.5
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.5e-60 236.1 125 90.4
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.5e-60 235.3 125 89.6
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 89.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.5e-60 235.3 127 89.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.2e-60 234.6 125 89.6
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 88.1
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 88.1
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 88.1
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 87.3
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.2e-59 233.0 126 86.5
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.2e-59 233.0 126 87.3
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 88.1
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 89.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 88.1
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 87.3
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 87.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 87.3
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 88.9
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 84.9
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 88.1
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 8.0e-59 230.3 127 87.4
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.0e-58 229.9 127 88.2
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 85.7
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 86.5
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.8e-58 229.2 125 85.6
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 85.7
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 84.9
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 86.5
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 86.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 86.5
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 87.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 4.0e-58 228.0 124 87.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 85.7
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 85.7
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 85.7
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 6.8e-58 227.3 124 86.3
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 6.8e-58 227.3 126 85.7
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 85.7
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 86.5
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 85.7
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 86.5
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.2e-57 226.5 125 84.8
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 87.3
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 86.5
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.1
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 83.3
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 85.7
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 84.9
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 84.9
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 84.1
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 84.9
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 7.5e-57 223.8 126 84.9
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 84.9
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 7.5e-57 223.8 126 85.7
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 84.9
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.3e-56 223.0 125 82.4
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 84.1
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 85.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.7e-56 222.6 125 84.0
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 85.7
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 85.7
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.2e-56 222.2 126 85.7
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 85.7
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.2e-56 222.2 125 81.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 2.2e-56 222.2 125 81.6
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.2e-56 222.2 124 83.9
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 2.9e-56 221.9 126 84.9
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 84.9
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 84.9
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 84.1
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 2.9e-56 221.9 126 83.3
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 84.9
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 84.9
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 84.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 84.9
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 83.3
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.4e-56 220.7 126 84.1
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 8.3e-56 220.3 126 84.9
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 3.2e-55 218.4 126 83.3
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 5.4e-55 217.6 127 82.7
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 5.4e-55 217.6 126 82.5
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 81.0
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 3.5e-54 214.9 126 82.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 4.6e-54 214.5 126 80.2
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 4.6e-54 214.5 126 81.0
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 5.9e-54 214.2 140 74.3
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 5.9e-54 214.2 126 82.5
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.0e-53 213.4 127 83.5
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.3e-53 212.2 126 80.2
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 78.6
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.5e-52 208.8 114 85.1
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.3e-52 208.0 126 80.2
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.6e-51 206.1 126 77.8
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.6e-51 204.9 107 92.5
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.0e-49 199.1 124 76.6
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 3.4e-49 198.4 112 85.7
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 7.5e-49 197.2 126 73.0
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 9.8e-49 196.8 126 74.6
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 86.9
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 2.2e-48 195.7 107 86.9
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.9e-48 195.3 107 86.9
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 73.0
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 5.4e-47 191.0 94 92.6
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 5.4e-47 191.0 139 71.9
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.2e-46 189.9 93 91.4
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 3.5e-46 188.3 107 84.1
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.0e-46 187.6 107 84.1
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 7.8e-46 187.2 107 83.2
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 7.8e-46 187.2 126 69.8
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.7e-45 186.0 107 84.1
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 2.3e-45 185.7 107 83.2
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.0e-45 184.5 107 82.2
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.1e-44 183.3 94 88.3
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 1.9e-44 182.6 107 78.5
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 3.3e-44 181.8 112 80.4
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.2e-43 179.9 107 83.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.6e-43 178.3 112 78.6
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 6.2e-43 177.6 104 80.8
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.1e-42 176.8 107 80.4
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 7.1e-39 164.1 126 67.5
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 7.8e-38 160.6 126 63.5
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.6e-36 154.5 124 65.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.6e-35 152.9 141 57.4
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 6.8e-34 147.5 75 88.0
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.5e-33 146.4 102 62.7
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 4.4e-33 144.8 126 61.9
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 8.4e-32 140.6 104 61.5
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.7e-30 135.6 79 78.5
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.3e-29 133.3 79 79.7
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.9e-28 129.4 75 82.7
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 7.3e-28 127.5 126 55.6
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 9.6e-28 127.1 67 86.6
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-27 126.3 91 70.3
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 2.8e-27 125.6 66 86.4
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.0e-26 121.7 91 67.0
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 5.8e-25 117.9 93 68.8
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.8e-24 115.2 108 50.9
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 5.4e-23 111.3 63 81.0
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 8.7e-21 104.0 75 65.3
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.9e-20 102.8 97 57.7
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 9.9e-17 90.5 75 64.0
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 3.8e-16 88.6 103 45.6
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 8.4e-16 87.4 72 62.5
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 1.4e-15 86.7 78 53.8
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.6e-14 83.2 43 88.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.8e-08 62.0 45 68.9
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.1e-07 60.5 42 73.8


User provided reference genes

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