Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 0.0e+00 2387.5 1236 100.0
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 0.0e+00 2263.4 1226 96.1
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 0.0e+00 2163.3 1230 91.6
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 0.0e+00 2123.2 1239 90.0
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 0.0e+00 2122.1 1236 90.0
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 0.0e+00 2082.0 1264 87.4
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 0.0e+00 1876.3 1241 79.0
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 0.0e+00 1801.9 1240 77.0
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 0.0e+00 1798.1 1277 74.7
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 0.0e+00 1796.2 1247 75.5
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 0.0e+00 1789.2 1283 73.8
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1779.6 1248 75.1
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 0.0e+00 1774.6 1271 74.2
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 0.0e+00 1774.6 1247 75.0
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 0.0e+00 1774.2 1242 75.0
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 0.0e+00 1763.0 1250 74.2
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 0.0e+00 1761.5 1248 75.0
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1760.3 1249 76.2
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 0.0e+00 1760.3 1249 76.2
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1758.4 1254 75.0
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 0.0e+00 1752.6 1246 75.6
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 0.0e+00 1751.5 1244 74.4
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 0.0e+00 1750.7 1249 75.0
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1744.9 1246 74.9
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 0.0e+00 1741.5 1250 73.8
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1739.5 1249 74.0
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 0.0e+00 1734.5 1247 74.7
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1731.8 1247 74.7
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1731.5 1251 73.2
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1730.3 1251 73.2
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 0.0e+00 1726.1 1252 73.6
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1723.8 1247 74.3
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 0.0e+00 1723.4 1270 71.6
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 0.0e+00 1716.8 1250 72.6
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 0.0e+00 1714.5 1250 73.4
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 0.0e+00 1714.1 1246 73.6
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 0.0e+00 1707.2 1248 72.9
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1706.0 1252 73.7
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1702.2 1258 72.4
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 0.0e+00 1701.8 1252 72.4
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 0.0e+00 1696.4 1249 72.3
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 0.0e+00 1695.2 1265 70.9
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 0.0e+00 1693.3 1260 71.5
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 0.0e+00 1691.4 1250 72.1
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1687.2 1272 70.8
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 0.0e+00 1678.7 1247 72.6
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 0.0e+00 1677.1 1250 72.0
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 0.0e+00 1672.9 1245 71.4
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1665.6 1251 70.5
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1665.6 1251 71.5
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 0.0e+00 1662.9 1242 71.2
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 0.0e+00 1660.6 1263 71.3
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 0.0e+00 1657.1 1248 70.4
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1654.0 1255 71.2
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 0.0e+00 1653.3 1272 70.5
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 0.0e+00 1651.3 1255 71.1
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 0.0e+00 1651.0 1247 69.6
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1649.0 1252 70.4
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 0.0e+00 1646.3 1241 72.1
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 0.0e+00 1645.9 1248 70.0
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 0.0e+00 1644.4 1236 71.5
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 0.0e+00 1644.4 1250 70.3
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 0.0e+00 1640.9 1268 68.6
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 0.0e+00 1640.9 1248 70.8
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 0.0e+00 1640.2 1251 72.0
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 0.0e+00 1635.2 1248 70.4
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 0.0e+00 1634.8 1490 62.3
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1633.2 1251 69.7
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 0.0e+00 1632.8 1252 70.4
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 0.0e+00 1628.2 1249 70.4
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 0.0e+00 1627.5 1249 70.5
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1620.5 1256 70.0
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 0.0e+00 1614.7 1250 68.6
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 0.0e+00 1612.8 1255 69.6
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1609.7 1250 68.4
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 0.0e+00 1607.4 1252 68.4
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 0.0e+00 1607.4 1253 69.2
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 0.0e+00 1603.6 1248 69.0
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1592.4 1251 69.1
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1591.6 1251 69.1
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 0.0e+00 1590.5 1251 69.1
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 0.0e+00 1586.2 1251 68.3
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 0.0e+00 1578.9 1251 68.7
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 0.0e+00 1572.0 1293 66.9
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 0.0e+00 1572.0 1286 67.2
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1558.1 1250 67.5
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 0.0e+00 1557.0 1252 67.7
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 0.0e+00 1552.0 1092 76.1
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 0.0e+00 1551.2 1279 65.5
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 0.0e+00 1547.3 1266 65.9
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 0.0e+00 1546.9 1119 74.2
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 0.0e+00 1535.4 1271 65.3
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 0.0e+00 1520.8 1268 65.5
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 0.0e+00 1520.4 1256 67.1
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 0.0e+00 1504.6 1242 65.1
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 0.0e+00 1485.7 1302 63.8
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 0.0e+00 1437.9 1287 62.0
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 0.0e+00 1427.9 1152 67.3
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 0.0e+00 1358.2 1271 59.0
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1295.0 1228 58.5
QL06p042284 Quercus lobata HOM05D003435 ORTHO05D004032 0.0e+00 1246.5 888 76.2
TPR.G19005 Trifolium pratense HOM05D003435 ORTHO05D004032 0.0e+00 1218.4 919 72.1
MELO3C020891.2 Cucumis melo HOM05D003435 ORTHO05D004032 0.0e+00 1202.2 892 73.7
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1194.1 1093 60.2
VMungo1215G2578 Vigna mungo HOM05D003435 ORTHO05D004032 0.0e+00 1184.9 918 70.3
VMungo0251G2411 Vigna mungo HOM05D003435 ORTHO05D004032 0.0e+00 1165.2 889 71.9
Lalb_Chr16g0388361 Lupinus albus HOM05D003435 ORTHO05D004032 0.0e+00 1161.7 903 69.8
Medtr5g017800 Medicago truncatula HOM05D003435 ORTHO05D004032 0.0e+00 1159.1 935 68.0
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 0.0e+00 1152.1 926 65.8
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 0.0e+00 1148.3 821 73.0
Lalb_Chr09g0323051 Lupinus albus HOM05D003435 ORTHO05D004032 0.0e+00 1131.3 887 70.3
HPP92_006173 Vanilla planifolia HOM05D003435 ORTHO05D004032 0.0e+00 1122.1 1018 62.1
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 1.3e-310 1070.1 1309 49.3
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 2.1e-308 1062.8 1275 48.9
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 1.2e-303 1047.0 1270 48.9
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 4.6e-300 1035.0 1356 45.4
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 2.3e-299 1032.7 640 80.6
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 3.3e-290 1002.3 793 66.8
Potri.005G136300 Populus trichocarpa HOM05D003435 ORTHO05D004032 3.3e-258 896.0 683 72.5
Hund13566 Selenicereus undatus HOM05D003435 ORTHO05D004032 4.7e-252 875.5 685 70.8
CDE05G0341 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 3.6e-244 849.4 785 63.1
Actinidia02768 Actinidia chinensis HOM05D003435 ORTHO05D004032 1.0e-238 831.2 631 74.6
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 9.4e-237 824.7 624 68.3
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 2.6e-226 790.0 1414 37.8
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 7.5e-226 788.5 1438 38.2
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 2.0e-207 727.2 523 69.0
unitig_27.g25323 Utricularia gibba HOM05D003435 ORTHO05D004032 1.7e-190 671.0 593 66.4
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 1.3e-161 575.1 432 67.8
Os09g0408000 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 6.9e-155 552.7 497 64.8
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 1.3e-150 538.5 472 62.3
CDE05G1509 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 5.5e-128 463.4 439 60.6
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 5.2e-126 456.8 311 70.7
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 2.6e-125 454.5 319 69.3
SHI23026 Sapria himalayana HOM05D003435 ORTHO05D004032 4.1e-123 447.2 559 51.3
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 7.7e-122 443.0 311 69.5
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 7.7e-122 443.0 265 79.2
VMungo0251G1968 Vigna mungo HOM05D003435 ORTHO05D004032 1.1e-120 439.1 356 61.8
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 2.0e-117 428.3 274 73.7
Ah.10g029830 Amaranthus hybridus HOM05D003435 ORTHO05D004032 3.7e-108 397.5 222 88.3
CDE05G0727 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 5.8e-93 347.1 264 64.8
VMungo1215G2721 Vigna mungo HOM05D003435 ORTHO05D004032 1.6e-87 328.9 235 67.7
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 1.9e-83 315.5 213 70.9
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 1.9e-83 315.5 306 53.3
RhsimUnG0101300 Rhododendron simsii HOM05D003435 ORTHO05D004032 4.1e-83 314.3 297 56.6
GSVIVG01004639001 Vitis vinifera HOM05D003435 ORTHO05D004032 1.2e-77 296.2 160 91.2
arahy.Tifrunner.gnm1.ann1.B7G4FR Arachis hypogaea HOM05D003435 ORTHO05D004032 5.8e-77 293.9 158 91.1
vmacro17936 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 1.2e-74 286.2 158 89.9
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 5.6e-72 277.3 198 72.2
Hma1.2p1_0767F.1_g215490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 6.2e-71 273.9 191 67.0
GSVIVG01002593001 Vitis vinifera HOM05D003435 ORTHO05D004032 5.2e-70 270.8 159 80.5
CDE05G0314 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.2e-68 265.4 157 82.8
SHI23027 Sapria himalayana HOM05D003435 ORTHO05D004032 2.3e-65 255.4 164 78.0
GSVIVG01004485001 Vitis vinifera HOM05D003435 ORTHO05D004032 2.8e-63 248.4 157 82.8
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 2.0e-61 242.3 194 58.2
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 2.7e-50 205.3 165 64.8
BcaC09g50042 Brassica carinata HOM05D003435 ORTHO05D004032 1.1e-46 193.4 135 75.6
C01p29660 Brassica napus HOM05D003435 ORTHO05D004032 1.1e-46 193.4 135 75.6
BolC1t02908H Brassica oleracea HOM05D003435 ORTHO05D004032 1.1e-46 193.4 135 75.6
Rhsim06G0113700 Rhododendron simsii HOM05D003435 ORTHO05D004032 9.3e-43 180.3 98 86.7
Rhsim03G0142800 Rhododendron simsii HOM05D003435 ORTHO05D004032 1.5e-37 162.9 156 57.7
GSVIVG01002902001 Vitis vinifera HOM05D003435 ORTHO05D004032 4.5e-37 161.4 108 79.6
Hma1.2p1_0979F.1_g243630 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 2.7e-34 152.1 84 79.8
Hma1.2p1_1179F.1_g264490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 2.7e-34 152.1 84 79.8
Actinidia02767 Actinidia chinensis HOM05D003435 ORTHO05D004032 2.0e-29 136.0 75 92.0
Psat4g095840 Pisum sativum HOM05D003435 ORTHO05D020975 2.0e-29 136.0 155 51.6
Psat7g159960 Pisum sativum HOM05D003635 ORTHO05D004283 5.0e-28 131.3 172 49.4
EL10Ac2g02709 Beta vulgaris HOM05D003435 ORTHO05D004032 8.5e-28 130.6 288 37.8
Psat5g173160 Pisum sativum HOM05D003435 ORTHO05D020975 6.1e-26 124.4 101 61.4
Psat6g176120 Pisum sativum HOM05D003435 ORTHO05D004032 1.0e-25 123.6 155 50.3
Psat5g173200 Pisum sativum HOM05D000518 ORTHO05D000737 1.8e-25 122.9 101 60.4
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 4.4e-24 118.2 165 45.5
Psat5g056680 Pisum sativum HOM05D003435 ORTHO05D023081 2.8e-23 115.5 127 50.4
COL.COLO4_18252 Corchorus olitorius HOM05D003435 ORTHO05D004032 1.8e-22 112.8 107 55.1
BcaB02g09979 Brassica carinata HOM05D003435 ORTHO05D004032 7.7e-21 107.5 76 71.1
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 5.5e-19 101.3 65 80.0
Gohir.A11G190351 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.6e-18 99.8 67 71.6
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 2.6e-13 82.4 65 70.8
HPP92_006267 Vanilla planifolia HOM05D003435 ORTHO05D004032 3.8e-12 78.6 167 33.5
HPP92_006266 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.1e-11 77.0 47 76.6
Mapoly0072s0002 Marchantia polymorpha HOM05D003435 ORTHO05D004032 7.2e-11 74.3 57 61.4


User provided reference genes

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