Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000308g0240 Nicotiana tabacum HOM05D006158 ORTHO05D007065 4.4e-27 124.0 68 100.0
Nitab4.5_0000336g0020 Nicotiana tabacum HOM05D006158 ORTHO05D007065 1.7e-10 68.9 88 56.8
Peaxi162Scf00684g00228 Petunia axillaris HOM05D006158 ORTHO05D007065 4.8e-10 67.4 63 63.5
Lj1g0002606 Lotus japonicus HOM05D006158 ORTHO05D007065 1.4e-09 65.9 66 60.6
ECA240G2632 Erigeron canadensis HOM05D006158 ORTHO05D007065 1.8e-09 65.5 86 53.5
CAN.G1412.17 Capsicum annuum HOM05D006158 ORTHO05D007065 3.1e-09 64.7 42 85.7
Glyma.04G012400 Glycine max HOM05D006158 ORTHO05D007065 3.1e-09 64.7 63 58.7
Solyc01g109710.3 Solanum lycopersicum HOM05D006158 ORTHO05D007065 3.1e-09 64.7 42 85.7
Thecc.02G083700 Theobroma cacao HOM05D006158 ORTHO05D007065 3.1e-09 64.7 63 61.9
Sabra09G0090100 Salix brachista HOM05D006158 ORTHO05D007065 4.1e-09 64.3 63 61.9
arahy.Tifrunner.gnm1.ann1.VMSS78 Arachis hypogaea HOM05D006158 ORTHO05D007065 5.4e-09 63.9 63 61.9
arahy.Tifrunner.gnm1.ann1.VZ83MM Arachis hypogaea HOM05D006158 ORTHO05D007065 5.4e-09 63.9 63 61.9
CiPaw.05G065900 Carya illinoinensis HOM05D006158 ORTHO05D007065 7.0e-09 63.5 42 81.0
Haze_02402 Corylus avellana HOM05D006158 ORTHO05D007065 7.0e-09 63.5 42 81.0
Dinv42054 Davidia involucrata HOM05D006158 ORTHO05D007065 7.0e-09 63.5 63 58.7
Ah.01g019280 Amaranthus hybridus HOM05D006158 ORTHO05D007065 9.1e-09 63.2 63 58.7
Cfa004987 Carpinus fangiana HOM05D006158 ORTHO05D007065 9.1e-09 63.2 42 81.0
Potri.004G156100 Populus trichocarpa HOM05D006158 ORTHO05D007065 9.1e-09 63.2 63 58.7
Potri.004G156200 Populus trichocarpa HOM05D006158 ORTHO05D007065 9.1e-09 63.2 63 60.3
Sopen01g051900 Solanum pennellii HOM05D006158 ORTHO05D007065 9.1e-09 63.2 42 83.3
PGSC0003DMG400000731 Solanum tuberosum HOM05D006158 ORTHO05D007065 9.1e-09 63.2 42 83.3
TPR.G38099 Trifolium pratense HOM05D006158 ORTHO05D007065 9.1e-09 63.2 63 61.9
CARHR112610 Cardamine hirsuta HOM05D006158 ORTHO05D007065 1.2e-08 62.8 86 48.8
Ca_15362_v3 Cicer arietinum L. HOM05D006158 ORTHO05D007065 1.2e-08 62.8 42 81.0
MELO3C023300.2 Cucumis melo HOM05D006158 ORTHO05D007065 1.2e-08 62.8 63 58.7
CsaV3_2G014760 Cucumis sativus L. HOM05D006158 ORTHO05D007065 1.2e-08 62.8 63 58.7
Lalb_Chr23g0265361 Lupinus albus HOM05D006158 ORTHO05D007065 1.2e-08 62.8 63 55.6
Sed0010470 Sechium edule HOM05D006158 ORTHO05D007065 1.2e-08 62.8 63 58.7
CiPaw.06G134600 Carya illinoinensis HOM05D006158 ORTHO05D007065 1.6e-08 62.4 63 58.7
ClCG11G004360 Citrullus lanatus HOM05D006158 ORTHO05D007065 1.6e-08 62.4 63 57.1
Gorai.008G029500 Gossypium raimondii HOM05D006158 ORTHO05D007065 1.6e-08 62.4 63 60.3
Medtr3g116830 Medicago truncatula HOM05D006158 ORTHO05D007065 1.6e-08 62.4 63 58.7
Rhsim11G0178600 Rhododendron simsii HOM05D006158 ORTHO05D007065 1.6e-08 62.4 59 62.7
Duzib132G0028 Durio zibethinus HOM05D006158 ORTHO05D007065 2.0e-08 62.0 63 58.7
Gohir.D12G028800 Gossypium hirsutum HOM05D006158 ORTHO05D007065 2.0e-08 62.0 42 81.0
VMungo1309G1281 Vigna mungo HOM05D006158 ORTHO05D007065 2.0e-08 62.0 42 76.2
EL10Ac9g21712 Beta vulgaris HOM05D006158 ORTHO05D007065 2.7e-08 61.6 63 58.7
Oeu020748.1 Olea europaea HOM05D006158 ORTHO05D007065 2.7e-08 61.6 42 81.0
Oeu029148.1 Olea europaea HOM05D006158 ORTHO05D007065 2.7e-08 61.6 42 81.0
SalBow6G0500 Salvia bowleyana HOM05D006158 ORTHO05D007065 2.7e-08 61.6 42 81.0
Cpa.g.sc62.161 Carica papaya HOM05D006158 ORTHO05D007065 3.5e-08 61.2 63 57.1
Eucgr.G01684 Eucalyptus grandis HOM05D006158 ORTHO05D007065 3.5e-08 61.2 63 55.6
Nitab4.5_0002241g0040 Nicotiana tabacum HOM05D006158 ORTHO05D007065 3.5e-08 61.2 69 59.4
Psat5g004200 Pisum sativum HOM05D006158 ORTHO05D007065 3.5e-08 61.2 63 60.3
Sabra04G0104200 Salix brachista HOM05D006158 ORTHO05D007065 3.5e-08 61.2 63 57.1
CSS0017185 Camellia sinensis var. sinensis HOM05D006158 ORTHO05D007065 4.5e-08 60.8 87 49.4
AUR62016751 Chenopodium quinoa HOM05D006158 ORTHO05D007065 4.5e-08 60.8 63 57.1
Ciclev10029371m.g Citrus clementina HOM05D006158 ORTHO05D007065 4.5e-08 60.8 63 57.1
Gohir.A12G029500 Gossypium hirsutum HOM05D006158 ORTHO05D007065 4.5e-08 60.8 63 58.7
MBI16_g07736_MAGBIO Magnolia biondii HOM05D006158 ORTHO05D007065 4.5e-08 60.8 87 50.6
Manes.11G086500 Manihot esculenta HOM05D006158 ORTHO05D007065 4.5e-08 60.8 63 58.7
Sc18g0004420 Simmondsia chinensis HOM05D006158 ORTHO05D007065 4.5e-08 60.8 42 78.6
HPP92_008313 Vanilla planifolia HOM05D006158 ORTHO05D007065 4.5e-08 60.8 63 57.1
Aqoxy5G01600 Aquilegia oxysepala HOM05D006158 ORTHO05D007065 5.9e-08 60.5 87 49.4
BcaB08g34988 Brassica carinata HOM05D006158 ORTHO05D007065 5.9e-08 60.5 42 73.8
BcaC07g41131 Brassica carinata HOM05D006158 ORTHO05D007065 5.9e-08 60.5 42 73.8
A09p58080 Brassica napus HOM05D001159 ORTHO05D001712 5.9e-08 60.5 42 73.8
C08p41330 Brassica napus HOM05D001159 ORTHO05D001712 5.9e-08 60.5 42 73.8
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 5.9e-08 60.5 42 73.8
BraA09t41196Z Brassica rapa HOM05D001159 ORTHO05D001712 5.9e-08 60.5 42 73.8
CSS0043812 Camellia sinensis var. sinensis HOM05D006158 ORTHO05D007065 5.9e-08 60.5 63 54.0
Migut.B00227 Erythranthe guttata HOM05D006158 ORTHO05D007065 5.9e-08 60.5 42 78.6
Potri.009G117500 Populus trichocarpa HOM05D006158 ORTHO05D007065 5.9e-08 60.5 63 60.3
FAN15G1568 Fragaria x ananassa HOM05D006158 ORTHO05D007065 7.7e-08 60.1 90 48.9
Lj9A374T110 Lonicera japonica HOM05D006158 ORTHO05D007065 7.7e-08 60.1 63 58.7
Hund06240 Selenicereus undatus HOM05D006158 ORTHO05D007065 7.7e-08 60.1 63 57.1
TAR381G1268 Trochodendron aralioides HOM05D006158 ORTHO05D007065 7.7e-08 60.1 89 46.1
vmacro02093 Vaccinium macrocarpon HOM05D006158 ORTHO05D007065 7.7e-08 60.1 42 76.2
Aa31LG7G14860 Aethionema arabicum HOM05D006158 ORTHO05D007065 1.0e-07 59.7 42 73.8
DCAR_028978 Daucus carota HOM05D006158 ORTHO05D007065 1.0e-07 59.7 63 55.6
Nn5g29641 Nelumbo nucifera HOM05D006158 ORTHO05D007065 1.0e-07 59.7 63 55.6
Prupe.8G095600 Prunus persica HOM05D006158 ORTHO05D007065 1.0e-07 59.7 87 47.1
AT2G21620 Arabidopsis thaliana HOM05D006158 ORTHO05D007065 1.3e-07 59.3 42 71.4
Carub.0004s0065 Capsella rubella HOM05D006158 ORTHO05D007065 1.3e-07 59.3 86 44.2
FAN27G0970 Fragaria x ananassa HOM05D006158 ORTHO05D007065 1.3e-07 59.3 90 46.7
Phvul.009G023400 Phaseolus vulgaris HOM05D006158 ORTHO05D007065 1.3e-07 59.3 62 53.2
SGA_v2.0_scaffold32G13170 Striga asiatica HOM05D006158 ORTHO05D007065 1.3e-07 59.3 42 76.2
FvH4_2g09040 Fragaria vesca HOM05D006158 ORTHO05D007065 1.7e-07 58.9 63 57.1
HanXRQChr09g0248171 Helianthus annuus HOM05D006158 ORTHO05D007065 1.7e-07 58.9 63 55.6
Sp4g00780 Schrenkiella parvula HOM05D006158 ORTHO05D007065 1.7e-07 58.9 86 45.3
MSTRG.20075 Avicennia marina HOM05D006158 ORTHO05D007065 2.3e-07 58.5 63 55.6
Duzib052G0490 Durio zibethinus HOM05D006158 ORTHO05D007065 2.3e-07 58.5 42 71.4
Gorai.012G155300 Gossypium raimondii HOM05D006158 ORTHO05D007065 2.3e-07 58.5 42 71.4
Hma1.2p1_2192F.1_g316750 Hydrangea macrophylla HOM05D006158 ORTHO05D007065 2.3e-07 58.5 63 57.1
Hma1.2p1_2496F.1_g323328 Hydrangea macrophylla HOM05D006158 ORTHO05D007065 2.3e-07 58.5 63 57.1
MD05G1064900 Malus domestica HOM05D006158 ORTHO05D007065 2.3e-07 58.5 42 71.4
PSO675G7009 Papaver somniferum HOM05D006158 ORTHO05D007065 2.3e-07 58.5 64 57.8
MD05G1065000 Malus domestica HOM05D006158 ORTHO05D007065 2.9e-07 58.2 87 48.3
RcHm_v2.0_Chr6g0264711 Rosa chinensis HOM05D006158 ORTHO05D007065 2.9e-07 58.2 63 57.1
THA.LOC104824819 Tarenaya hassleriana HOM05D006158 ORTHO05D007065 2.9e-07 58.2 42 73.8
Atru.chr5.3034 Acer truncatum HOM05D006158 ORTHO05D007065 3.8e-07 57.8 63 55.6
Thhalv10000338m.g Eutrema salsugineum HOM05D006158 ORTHO05D007065 5.0e-07 57.4 86 44.2
Gohir.A04G127801 Gossypium hirsutum HOM05D006158 ORTHO05D007065 5.0e-07 57.4 42 69.0
Gohir.D04G167000 Gossypium hirsutum HOM05D006158 ORTHO05D007065 5.0e-07 57.4 42 69.0
QL11p044699 Quercus lobata HOM05D006158 ORTHO05D007065 5.0e-07 57.4 42 71.4
QL11p044722 Quercus lobata HOM05D006158 ORTHO05D007065 5.0e-07 57.4 42 71.4
GSVIVG01023785001 Vitis vinifera HOM05D006158 ORTHO05D007065 5.0e-07 57.4 63 55.6
CDE05G2374 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 6.6e-07 57.0 42 71.4
MD10G1073900 Malus domestica HOM05D006158 ORTHO05D007065 6.6e-07 57.0 42 69.0
unitig_0.g63 Utricularia gibba HOM05D006158 ORTHO05D007065 6.6e-07 57.0 42 73.8
CDE11G1056 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 8.6e-07 56.6 42 71.4
Cc02_g17430 Coffea canephora HOM05D006158 ORTHO05D007065 8.6e-07 56.6 42 71.4
Os02g0705400 Oryza sativa ssp. japonica HOM05D006158 ORTHO05D007065 1.5e-06 55.8 42 69.0
PGR042G1835 Punica granatum HOM05D006158 ORTHO05D007065 2.5e-06 55.1 63 49.2
HPP92_004901 Vanilla planifolia HOM05D006158 ORTHO05D007065 3.3e-06 54.7 63 50.8
CANSAT35G0650 Cannabis sativa HOM05D006158 ORTHO05D007065 5.5e-06 53.9 63 50.8
AUR62011306 Chenopodium quinoa HOM05D006158 ORTHO05D007065 5.5e-06 53.9 63 55.6
DCAR_022980 Daucus carota HOM05D006158 ORTHO05D007065 7.2e-06 53.5 42 66.7


User provided reference genes

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