Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000299g0070 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.0e-150 535.8 278 100.0
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.4e-92 342.8 308 66.9
Nitab4.5_0006085g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010080 8.2e-80 301.2 244 71.7
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.7e-77 293.5 272 61.0
PGR069G0003 Punica granatum HOM05D005210 ORTHO05D010080 2.3e-74 283.1 205 76.6
Nn1g09997 Nelumbo nucifera HOM05D005210 ORTHO05D010080 1.5e-73 280.4 200 78.0
Nn1g10098 Nelumbo nucifera HOM05D005210 ORTHO05D010080 1.5e-73 280.4 200 78.0
Atru.chr1.3624 Acer truncatum HOM05D005210 ORTHO05D010080 1.3e-72 277.3 204 76.5
DCAR_032434 Daucus carota HOM05D005210 ORTHO05D010080 2.4e-71 273.1 196 76.0
Lj6g0026306 Lotus japonicus HOM05D005210 ORTHO05D010080 1.4e-68 263.8 203 67.0
Medtr6g012880 Medicago truncatula HOM05D005210 ORTHO05D010080 3.2e-68 262.7 202 66.3
Nitab4.5_0001761g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 5.5e-68 261.9 164 87.2
Phvul.005G088636 Phaseolus vulgaris HOM05D005210 ORTHO05D010080 3.0e-66 256.1 198 74.7
TPR.G32363 Trifolium pratense HOM05D005210 ORTHO05D010080 6.7e-66 255.0 202 66.8
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 7.4e-65 251.5 179 79.3
TPR.G22447 Trifolium pratense HOM05D005210 ORTHO05D010080 1.3e-64 250.8 203 64.0
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 1.7e-64 250.4 200 72.5
Ciclev10012798m.g Citrus clementina HOM05D005210 ORTHO05D010080 1.8e-63 246.9 199 71.4
Cfa023010 Carpinus fangiana HOM05D005210 ORTHO05D010080 2.0e-62 243.4 164 83.5
Cpa.g.sc38.57 Carica papaya HOM05D005210 ORTHO05D010080 1.3e-61 240.7 199 68.8
AUR62004733 Chenopodium quinoa HOM05D005210 ORTHO05D010080 1.1e-60 237.7 203 59.1
AUR62037526 Chenopodium quinoa HOM05D005210 ORTHO05D010080 4.2e-60 235.7 203 58.1
Lsat_1_v5_gn_7_109460 Lactuca sativa HOM05D005210 ORTHO05D010080 4.2e-60 235.7 201 58.7
Potri.007G062102 Populus trichocarpa HOM05D005210 ORTHO05D010080 2.1e-59 233.4 219 64.4
arahy.Tifrunner.gnm1.ann1.00SNP9 Arachis hypogaea HOM05D005210 ORTHO05D010080 4.7e-59 232.3 180 72.8
arahy.Tifrunner.gnm1.ann1.883WGW Arachis hypogaea HOM05D005210 ORTHO05D010080 4.7e-59 232.3 180 72.8
MBI04_g15069_MAGBIO Magnolia biondii HOM05D005210 ORTHO05D010080 7.9e-59 231.5 185 73.0
CANSAT78G1777 Cannabis sativa HOM05D005210 ORTHO05D010080 1.4e-58 230.7 198 66.2
Lalb_Chr03g0038991 Lupinus albus HOM05D005210 ORTHO05D010080 1.4e-58 230.7 158 81.6
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 6.7e-58 228.4 273 56.0
Oeu020894.1 Olea europaea HOM05D005210 ORTHO05D010080 4.4e-57 225.7 200 59.5
CAN.G1109.4 Capsicum annuum HOM05D005210 ORTHO05D010080 5.7e-57 225.3 143 88.1
Lalb_Chr02g0153671 Lupinus albus HOM05D005210 ORTHO05D010080 7.4e-57 224.9 186 71.5
CAN.G110.12 Capsicum annuum HOM05D005210 ORTHO05D010080 1.7e-56 223.8 143 88.1
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 1.4e-55 220.7 171 72.5
VMungo0329G0007 Vigna mungo HOM05D005210 ORTHO05D010080 4.1e-55 219.2 174 74.1
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 5.3e-55 218.8 159 78.0
Gohir.A10G200000 Gossypium hirsutum HOM05D005210 ORTHO05D010080 4.2e-52 209.1 208 53.8
MELO3C028549.2 Cucumis melo HOM05D005210 ORTHO05D010080 7.2e-52 208.4 169 75.1
Ah.03g133380 Amaranthus hybridus HOM05D005210 ORTHO05D010080 3.6e-51 206.1 199 52.3
Gohir.A10G199900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 4.7e-51 205.7 206 52.4
PGSC0003DMG400020779 Solanum tuberosum HOM05D005210 ORTHO05D010080 4.7e-51 205.7 278 50.0
Gohir.D10G207900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 1.4e-50 204.1 208 51.9
Gorai.011G233600 Gossypium raimondii HOM05D005210 ORTHO05D010080 1.4e-50 204.1 208 51.9
RcHm_v2.0_MTg0498311 Rosa chinensis HOM05D005210 ORTHO05D010080 2.6e-49 199.9 146 76.0
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 1.7e-48 197.2 142 76.8
MSTRG.20585 Avicennia marina HOM05D005210 ORTHO05D010080 5.3e-47 192.2 198 51.0
Peaxi162Scf01267g00005 Petunia axillaris HOM05D005210 ORTHO05D010080 1.3e-45 187.6 246 49.2
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 5.0e-45 185.7 133 77.4
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 5.0e-45 185.7 133 77.4
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 5.0e-45 185.7 133 77.4
Migut.B01305 Erythranthe guttata HOM05D005210 ORTHO05D010080 6.5e-45 185.3 196 49.5
SGA_v2.0_scaffold119G32726 Striga asiatica HOM05D005210 ORTHO05D010080 1.1e-44 184.5 199 48.2
ECA236G2402 Erigeron canadensis HOM05D005210 ORTHO05D010080 1.5e-44 184.1 199 45.7
SGA_v2.0_scaffold167G38415 Striga asiatica HOM05D005210 ORTHO05D010080 9.4e-44 181.4 199 47.7
Aqoxy4G00327 Aquilegia oxysepala HOM05D005210 ORTHO05D010080 1.8e-42 177.2 204 47.1
SalBow8G1406 Salvia bowleyana HOM05D005210 ORTHO05D010080 5.2e-42 175.6 196 46.9
Nitab4.5_0001152g0440 Nicotiana tabacum HOM05D005210 ORTHO05D010080 4.4e-41 172.6 110 80.9
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 9.7e-41 171.4 127 80.3
SEGI_01777 Sequoiadendron giganteum HOM05D005210 ORTHO05D010080 1.7e-40 170.6 217 42.9
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.8e-39 167.2 126 71.4
unitig_750.g28447 Utricularia gibba HOM05D005210 ORTHO05D010080 1.5e-36 157.5 198 43.9
Peaxi162Scf01462g00001 Petunia axillaris HOM05D005210 ORTHO05D010080 5.2e-34 149.1 97 89.7
Oeu061104.1 Olea europaea HOM05D000700 ORTHO05D010080 8.8e-34 148.3 137 56.2
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-32 144.1 96 85.4
RcHm_v2.0_Chr2g0148221 Rosa chinensis HOM05D005210 ORTHO05D010080 8.3e-32 141.7 115 65.2
Nitab4.5_0000593g0150 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.4e-31 140.2 184 54.9
Nitab4.5_0003632g0030 Nicotiana tabacum HOM05D005210 ORTHO05D034847 1.7e-29 134.0 114 61.4
QL04p020150 Quercus lobata HOM05D005210 ORTHO05D010080 9.5e-28 128.3 104 74.0
Sed0004476 Sechium edule HOM05D005210 ORTHO05D010080 9.5e-28 128.3 91 84.6
Lalb_Chr17g0337341 Lupinus albus HOM05D005210 ORTHO05D010080 6.3e-24 115.5 65 84.6
arahy.Tifrunner.gnm1.ann1.KJ11LV Arachis hypogaea HOM05D001750 ORTHO05D001825 5.4e-23 112.5 102 58.8
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.7e-21 107.5 112 54.5
Hma1.2p1_0038F.1_g024120 Hydrangea macrophylla HOM05D005210 ORTHO05D010080 2.3e-21 107.1 58 86.2
RcHm_v2.0_Chr2g0148231 Rosa chinensis HOM05D005210 ORTHO05D010080 2.9e-21 106.7 72 70.8
arahy.Tifrunner.gnm1.ann1.03NBHP Arachis hypogaea HOM05D005210 ORTHO05D010080 3.9e-21 106.3 91 73.6
CDE02G1246 Ceratophyllum demersum HOM05D001325 ORTHO05D010080 4.3e-20 102.8 195 42.6
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 5.6e-20 102.4 97 58.8
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 4.7e-19 99.4 75 82.7
Ciclev10017151m.g Citrus clementina HOM05D005210 ORTHO05D010080 1.8e-18 97.4 113 52.2
CsaV3_5G017030 Cucumis sativus L. HOM05D005210 ORTHO05D010080 4.0e-18 96.3 70 72.9
Nitab4.5_0000345g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 5.2e-18 95.9 70 88.6
arahy.Tifrunner.gnm1.ann1.ZXP4DA Arachis hypogaea HOM05D005210 ORTHO05D010080 1.3e-16 91.3 90 58.9
Lalb_Chr03g0038471 Lupinus albus HOM05D005210 ORTHO05D010080 4.9e-16 89.4 50 86.0
Migut.B01023 Erythranthe guttata HOM05D005210 ORTHO05D010080 2.7e-14 83.6 172 36.6
CsaV3_5G020380 Cucumis sativus L. HOM05D005210 ORTHO05D010080 2.5e-12 77.0 57 71.9
CAN.G505.4 Capsicum annuum HOM05D005210 ORTHO05D010080 3.3e-12 76.6 46 76.1
CAN.G1.22 Capsicum annuum HOM05D024148 ORTHO05D024823 2.1e-11 73.9 39 87.2
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-09 67.8 36 86.1
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 2.0e-09 67.4 43 79.1
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 7.5e-09 65.5 45 71.1
Actinidia34923 Actinidia chinensis HOM05D001750 ORTHO05D001825 9.8e-09 65.1 33 81.8
arahy.Tifrunner.gnm1.ann1.KHE2M7 Arachis hypogaea HOM05D001750 ORTHO05D001825 9.8e-09 65.1 33 81.8
CSS0039147 Camellia sinensis var. sinensis HOM05D001750 ORTHO05D001825 9.8e-09 65.1 33 81.8
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 9.8e-09 65.1 33 81.8
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 9.8e-09 65.1 33 81.8
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 9.8e-09 65.1 33 81.8
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 9.8e-09 65.1 33 81.8
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 1.3e-08 64.7 43 76.7
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 1.3e-08 64.7 43 76.7
TPR.G18545 Trifolium pratense HOM05D001750 ORTHO05D001825 1.3e-08 64.7 43 76.7
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 1.7e-08 64.3 42 78.6
BolSC28t60419H Brassica oleracea HOM05D001750 ORTHO05D001825 2.9e-08 63.5 43 74.4
BraSC224t45818Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-08 63.5 43 74.4
BraSC77t46634Z Brassica rapa HOM05D001750 ORTHO05D001825 2.9e-08 63.5 43 74.4
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 3.7e-08 63.2 43 74.4
CAN.G1159.8 Capsicum annuum HOM05D001750 ORTHO05D001825 3.7e-08 63.2 33 81.8
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 4.9e-08 62.8 43 72.1
MBI06_g25392_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 4.9e-08 62.8 43 72.1
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 1.4e-07 61.2 43 72.1
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 1.4e-07 61.2 33 78.8
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 1.9e-07 60.8 33 75.8
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 1.9e-07 60.8 43 72.1
Lalb_Chr02g0153691 Lupinus albus HOM05D001750 ORTHO05D001825 4.1e-07 59.7 37 78.4
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 7.1e-07 58.9 33 75.8
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 7.1e-07 58.9 33 75.8
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 7.1e-07 58.9 33 75.8
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 7.1e-07 58.9 33 75.8
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 7.1e-07 58.9 33 75.8
Sc08g0004620 Simmondsia chinensis HOM05D001750 ORTHO05D001825 7.1e-07 58.9 33 75.8
Sc08g0004910 Simmondsia chinensis HOM05D001750 ORTHO05D001825 7.1e-07 58.9 33 75.8
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 4.6e-06 56.2 43 67.4
AagrBONN_evm.TU.Sc2ySwM_368.3250 Anthoceros agrestis HOM05D005210 ORTHO05D010080 7.8e-06 55.5 94 37.2
SHI35587 Sapria himalayana HOM05D008193 ORTHO05D010324 7.8e-06 55.5 43 67.4


User provided reference genes

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