Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000294g0090 Nicotiana tabacum HOM05D003338 ORTHO05D285928 1.0e-81 306.6 146 100.0
Nitab4.5_0007624g0030 Nicotiana tabacum HOM05D003338 ORTHO05D004042 5.9e-13 78.2 36 86.1
Peaxi162Scf00474g00725 Petunia axillaris HOM05D003338 ORTHO05D004042 7.7e-13 77.8 36 86.1
Nitab4.5_0013275g0020 Nicotiana tabacum HOM05D003338 ORTHO05D004042 2.2e-12 76.3 36 83.3
PGSC0003DMG400016131 Solanum tuberosum HOM05D003338 ORTHO05D004042 2.2e-12 76.3 36 83.3
CAN.G1344.18 Capsicum annuum HOM05D003338 ORTHO05D004042 2.9e-12 75.9 36 83.3
SalBow5G1027 Salvia bowleyana HOM05D003338 ORTHO05D004042 6.5e-12 74.7 36 80.6
SalBow5G2265 Salvia bowleyana HOM05D003338 ORTHO05D004042 6.5e-12 74.7 36 80.6
Oeu031120.1 Olea europaea HOM05D003338 ORTHO05D004042 8.5e-12 74.3 36 77.8
Oeu002143.1 Olea europaea HOM05D003338 ORTHO05D004042 1.9e-11 73.2 53 60.4
GSVIVG01004475001 Vitis vinifera HOM05D003338 ORTHO05D004042 4.2e-11 72.0 36 72.2
Atru.chr3.1241 Acer truncatum HOM05D003338 ORTHO05D004042 5.5e-11 71.6 36 72.2
QL06p035821 Quercus lobata HOM05D003338 ORTHO05D004042 5.5e-11 71.6 36 75.0
Solyc11g010650.4 Solanum lycopersicum HOM05D003338 ORTHO05D004042 5.5e-11 71.6 36 77.8
Sopen11g005460 Solanum pennellii HOM05D003338 ORTHO05D004042 5.5e-11 71.6 36 77.8
SGA_v2.0_scaffold115G32124 Striga asiatica HOM05D003338 ORTHO05D004042 7.2e-11 71.2 36 75.0
Migut.K00801 Erythranthe guttata HOM05D003338 ORTHO05D004042 9.4e-11 70.9 36 72.2
MSTRG.3729 Avicennia marina HOM05D003338 ORTHO05D004042 1.2e-10 70.5 36 72.2
Cc07_g14060 Coffea canephora HOM05D003338 ORTHO05D004042 1.2e-10 70.5 36 75.0
Rhsim08G0016700 Rhododendron simsii HOM05D003338 ORTHO05D004042 1.2e-10 70.5 35 74.3
CsaV3_6G044970 Cucumis sativus L. HOM05D003338 ORTHO05D004042 1.6e-10 70.1 36 72.2
ECA238G0630 Erigeron canadensis HOM05D003338 ORTHO05D004042 1.6e-10 70.1 36 69.4
Sc03g0000360 Simmondsia chinensis HOM05D003338 ORTHO05D004042 1.6e-10 70.1 36 69.4
Duzib147G0282 Durio zibethinus HOM05D003338 ORTHO05D004042 2.1e-10 69.7 36 69.4
Haze_03879 Corylus avellana HOM05D003338 ORTHO05D004042 3.6e-10 68.9 36 66.7
MELO3C007712.2 Cucumis melo HOM05D003338 ORTHO05D004042 3.6e-10 68.9 36 72.2
Aa31LG7G14250 Aethionema arabicum HOM05D003338 ORTHO05D004042 4.7e-10 68.6 36 66.7
ClCG01G018340 Citrullus lanatus HOM05D003338 ORTHO05D004042 4.7e-10 68.6 36 69.4
Dinv13598 Davidia involucrata HOM05D003338 ORTHO05D004042 4.7e-10 68.6 36 69.4
Dinv36934 Davidia involucrata HOM05D003338 ORTHO05D004042 4.7e-10 68.6 36 69.4
Gohir.A11G207200 Gossypium hirsutum HOM05D003338 ORTHO05D004042 6.1e-10 68.2 36 63.9
Gorai.007G232300 Gossypium raimondii HOM05D003338 ORTHO05D004042 6.1e-10 68.2 36 63.9
HanXRQChr07g0189431 Helianthus annuus HOM05D003338 ORTHO05D004042 6.1e-10 68.2 36 66.7
HanXRQChr07g0189491 Helianthus annuus HOM05D003338 ORTHO05D004042 6.1e-10 68.2 36 66.7
CARHR113760 Cardamine hirsuta HOM05D003338 ORTHO05D004042 8.0e-10 67.8 36 69.4
COL.COLO4_27356 Corchorus olitorius HOM05D003338 ORTHO05D004042 8.0e-10 67.8 36 63.9
Gohir.D11G216100 Gossypium hirsutum HOM05D003338 ORTHO05D004042 8.0e-10 67.8 36 61.1
Lalb_Chr16g0392131 Lupinus albus HOM05D003338 ORTHO05D004042 8.0e-10 67.8 36 69.4
Carub.0004s0173 Capsella rubella HOM05D003338 ORTHO05D004042 1.0e-09 67.4 36 66.7
Ciclev10026349m.g Citrus clementina HOM05D003338 ORTHO05D004042 1.0e-09 67.4 36 66.7
RcHm_v2.0_Chr2g0111171 Rosa chinensis HOM05D003338 ORTHO05D004042 1.0e-09 67.4 36 69.4
Thecc.01G090100 Theobroma cacao HOM05D003338 ORTHO05D004042 1.0e-09 67.4 36 63.9
Actinidia28822 Actinidia chinensis HOM05D003338 ORTHO05D004042 1.4e-09 67.0 35 68.6
MD15G1312000 Malus domestica HOM05D003338 ORTHO05D004042 1.4e-09 67.0 36 66.7
Prupe.6G202000 Prunus persica HOM05D003338 ORTHO05D004042 1.4e-09 67.0 36 66.7
Sp4g01610 Schrenkiella parvula HOM05D003338 ORTHO05D004042 1.4e-09 67.0 36 66.7
Actinidia24560 Actinidia chinensis HOM05D003338 ORTHO05D004042 1.8e-09 66.6 35 68.6
CiPaw.08G140500 Carya illinoinensis HOM05D003338 ORTHO05D004042 1.8e-09 66.6 52 51.9
Lj2A534T37 Lonicera japonica HOM05D003338 ORTHO05D004042 1.8e-09 66.6 35 68.6
MD01G1039800 Malus domestica HOM05D003338 ORTHO05D004042 1.8e-09 66.6 36 66.7
Sed0023723 Sechium edule HOM05D003338 ORTHO05D004042 1.8e-09 66.6 36 69.4
Lsat_1_v5_gn_2_70320 Lactuca sativa HOM05D003338 ORTHO05D004042 2.3e-09 66.2 36 69.4
Manes.12G126000 Manihot esculenta HOM05D003338 ORTHO05D004042 2.3e-09 66.2 36 63.9
Manes.13G100100 Manihot esculenta HOM05D003338 ORTHO05D004042 2.3e-09 66.2 36 63.9
FAN28G3012 Fragaria x ananassa HOM05D003338 ORTHO05D004042 3.0e-09 65.9 36 69.4
EL10Ac9g22066 Beta vulgaris HOM05D003338 ORTHO05D004042 4.0e-09 65.5 39 69.2
CSS0035314 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 4.0e-09 65.5 35 65.7
CSS0043251 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 4.0e-09 65.5 35 65.7
Cfa006878 Carpinus fangiana HOM05D003338 ORTHO05D004042 4.0e-09 65.5 36 63.9
Eucgr.I00561 Eucalyptus grandis HOM05D003338 ORTHO05D004042 4.0e-09 65.5 36 66.7
Eucgr.L02804 Eucalyptus grandis HOM05D003338 ORTHO05D004042 4.0e-09 65.5 36 66.7
FvH4_1g19620 Fragaria vesca HOM05D003338 ORTHO05D004042 4.0e-09 65.5 36 69.4
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 4.0e-09 65.5 36 69.4
vmacro18556 Vaccinium macrocarpon HOM05D003338 ORTHO05D004042 4.0e-09 65.5 35 65.7
arahy.Tifrunner.gnm1.ann1.II5C6K Arachis hypogaea HOM05D003338 ORTHO05D004042 5.2e-09 65.1 52 53.8
CSS0041719 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 5.2e-09 65.1 35 68.6
Cpa.g.sc55.21 Carica papaya HOM05D003338 ORTHO05D004042 5.2e-09 65.1 35 65.7
Lju188A3T30 Lonicera japonica HOM05D003338 ORTHO05D004042 5.2e-09 65.1 36 61.1
Psat4g119720 Pisum sativum HOM05D003338 ORTHO05D004042 6.7e-09 64.7 36 66.7
Prupe.6G202200 Prunus persica HOM05D003338 ORTHO05D004042 6.7e-09 64.7 58 46.6
TPR.G29240 Trifolium pratense HOM05D003338 ORTHO05D004042 6.7e-09 64.7 34 67.6
VMungo0251G1841 Vigna mungo HOM05D003338 ORTHO05D004042 6.7e-09 64.7 52 51.9
AT2G22570 Arabidopsis thaliana HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 63.9
BcaB08g35099 Brassica carinata HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 63.9
BcaB08g35103 Brassica carinata HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 63.9
BcaC07g41048 Brassica carinata HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 63.9
C08p40500 Brassica napus HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 63.9
BolC8t51620H Brassica oleracea HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 63.9
Ca_22612_v3 Cicer arietinum L. HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 63.9
DCAR_014182 Daucus carota HOM05D003338 ORTHO05D004042 8.8e-09 64.3 35 65.7
Medtr8g068830 Medicago truncatula HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 66.7
Phvul.003G288700 Phaseolus vulgaris HOM05D003338 ORTHO05D004042 8.8e-09 64.3 52 51.9
TAR628G0452 Trochodendron aralioides HOM05D003338 ORTHO05D004042 8.8e-09 64.3 36 66.7
FAN23G0745 Fragaria x ananassa HOM05D003338 ORTHO05D004042 1.2e-08 63.9 36 66.7
FAN26G2744 Fragaria x ananassa HOM05D003338 ORTHO05D004042 1.2e-08 63.9 36 66.7
Sabra05G0118200 Salix brachista HOM05D003338 ORTHO05D004042 1.2e-08 63.9 36 61.1
unitig_32.g10711 Utricularia gibba HOM05D003338 ORTHO05D004042 1.2e-08 63.9 34 67.6
arahy.Tifrunner.gnm1.ann1.NN64K4 Arachis hypogaea HOM05D003338 ORTHO05D004042 1.5e-08 63.5 36 61.1
EL10Ac6g15202 Beta vulgaris HOM05D003338 ORTHO05D004042 1.5e-08 63.5 35 74.3
CSS0020786 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 1.5e-08 63.5 35 65.7
CSS0038454 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 1.5e-08 63.5 35 65.7
Haze_10514 Corylus avellana HOM05D003338 ORTHO05D004042 1.5e-08 63.5 36 66.7
Duzib095G0002 Durio zibethinus HOM05D003338 ORTHO05D004042 1.5e-08 63.5 35 65.7
Duzib264G0712 Durio zibethinus HOM05D003338 ORTHO05D004042 1.5e-08 63.5 35 65.7
Thhalv10000301m.g Eutrema salsugineum HOM05D003338 ORTHO05D004042 1.5e-08 63.5 36 66.7
Potri.005G147400 Populus trichocarpa HOM05D003338 ORTHO05D004042 1.5e-08 63.5 36 58.3
Lj4g0005984 Lotus japonicus HOM05D003338 ORTHO05D004042 2.0e-08 63.2 36 63.9
TAR376G0459 Trochodendron aralioides HOM05D003338 ORTHO05D004042 2.0e-08 63.2 36 66.7
AL4G12110 Arabidopsis lyrata HOM05D003338 ORTHO05D004042 2.6e-08 62.8 36 61.1
TWI53G1042 Tripterygium wilfordii HOM05D003338 ORTHO05D004042 2.6e-08 62.8 36 61.1
Glyma.08G279200 Glycine max HOM05D003338 ORTHO05D004042 3.3e-08 62.4 36 63.9
CiPaw.15G141700 Carya illinoinensis HOM05D003338 ORTHO05D004042 4.4e-08 62.0 36 66.7
PGR142G2944 Punica granatum HOM05D003338 ORTHO05D004042 4.4e-08 62.0 36 63.9
AUR62012880 Chenopodium quinoa HOM05D003338 ORTHO05D004042 5.7e-08 61.6 35 68.6
MBI16_g27575_MAGBIO Magnolia biondii HOM05D003338 ORTHO05D004042 5.7e-08 61.6 36 63.9
Nn1g05580 Nelumbo nucifera HOM05D003338 ORTHO05D004042 5.7e-08 61.6 35 68.6
Nn5g29874 Nelumbo nucifera HOM05D003338 ORTHO05D004042 5.7e-08 61.6 36 69.4
Nitab4.5_0001636g0020 Nicotiana tabacum HOM05D003338 ORTHO05D004042 5.7e-08 61.6 36 69.4
PSO541G2807 Papaver somniferum HOM05D003338 ORTHO05D004042 5.7e-08 61.6 36 63.9
PSO675G2379 Papaver somniferum HOM05D003338 ORTHO05D004042 5.7e-08 61.6 36 63.9
Aqoxy6G00863 Aquilegia oxysepala HOM05D003338 ORTHO05D004042 7.5e-08 61.2 36 63.9
Dinv16005 Davidia involucrata HOM05D003338 ORTHO05D004042 7.5e-08 61.2 36 66.7
MSTRG.20279 Avicennia marina HOM05D003338 ORTHO05D004042 9.7e-08 60.8 39 61.5
CANSAT01G1860 Cannabis sativa HOM05D003338 ORTHO05D004042 1.3e-07 60.5 36 66.7
Cfa005742 Carpinus fangiana HOM05D003338 ORTHO05D004042 1.3e-07 60.5 36 63.9
Eucgr.I02618 Eucalyptus grandis HOM05D003338 ORTHO05D004042 1.3e-07 60.5 36 63.9
A09p57410 Brassica napus HOM05D003338 ORTHO05D004042 1.7e-07 60.1 36 61.1
BraA09t41133Z Brassica rapa HOM05D003338 ORTHO05D004042 1.7e-07 60.1 36 61.1
Gohir.D03G035850 Gossypium hirsutum HOM05D003338 ORTHO05D004042 1.7e-07 60.1 36 58.3
Gorai.003G037500 Gossypium raimondii HOM05D003338 ORTHO05D004042 1.7e-07 60.1 36 58.3
Ah.01g023890 Amaranthus hybridus HOM05D003338 ORTHO05D004042 2.2e-07 59.7 34 67.6
AUR62003666 Chenopodium quinoa HOM05D003338 ORTHO05D004042 2.2e-07 59.7 36 63.9
AUR62027104 Chenopodium quinoa HOM05D003338 ORTHO05D004042 2.2e-07 59.7 35 68.6
Actinidia02395 Actinidia chinensis HOM05D003338 ORTHO05D004042 2.8e-07 59.3 36 66.7
Hund14084 Selenicereus undatus HOM05D003338 ORTHO05D004042 2.8e-07 59.3 36 61.1
vmacro01863 Vaccinium macrocarpon HOM05D003338 ORTHO05D004042 3.7e-07 58.9 36 66.7
CANSAT54G2677 Cannabis sativa HOM05D003338 ORTHO05D004042 4.8e-07 58.5 36 66.7
Duzib132G0063 Durio zibethinus HOM05D003338 ORTHO05D004042 4.8e-07 58.5 36 63.9
Hund06460 Selenicereus undatus HOM05D003338 ORTHO05D004042 4.8e-07 58.5 36 58.3
TWI59G0154 Tripterygium wilfordii HOM05D003338 ORTHO05D004042 4.8e-07 58.5 36 61.1
Ah.03g139930 Amaranthus hybridus HOM05D003338 ORTHO05D004042 6.3e-07 58.2 36 69.4
CAN.G504.89 Capsicum annuum HOM05D003338 ORTHO05D004042 6.3e-07 58.2 36 63.9
Gohir.A12G016700 Gossypium hirsutum HOM05D003338 ORTHO05D004042 6.3e-07 58.2 36 63.9
Gohir.D12G017300 Gossypium hirsutum HOM05D003338 ORTHO05D004042 6.3e-07 58.2 36 63.9
Gorai.008G017600 Gossypium raimondii HOM05D003338 ORTHO05D004042 6.3e-07 58.2 36 63.9
PGR031G0986 Punica granatum HOM05D003338 ORTHO05D004042 6.3e-07 58.2 36 55.6
Rhsim11G0142200 Rhododendron simsii HOM05D003338 ORTHO05D004042 6.3e-07 58.2 35 65.7
CBR_g3030 Chara braunii HOM05D003338 ORTHO05D004042 8.2e-07 57.8 52 46.2
COL.COLO4_32400 Corchorus olitorius HOM05D003338 ORTHO05D004042 1.1e-06 57.4 36 61.1
Cc02_g20880 Coffea canephora HOM05D003338 ORTHO05D004042 1.4e-06 57.0 35 62.9
Peaxi162Scf01082g00018 Petunia axillaris HOM05D003338 ORTHO05D004042 1.4e-06 57.0 36 61.1
Sed0007926 Sechium edule HOM05D003338 ORTHO05D004042 1.4e-06 57.0 36 58.3
CSS0013733 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 1.8e-06 56.6 36 63.9
Lalb_Chr05g0217831 Lupinus albus HOM05D003338 ORTHO05D004042 1.8e-06 56.6 36 61.1
Lalb_Chr15g0076071 Lupinus albus HOM05D003338 ORTHO05D004042 1.8e-06 56.6 36 61.1
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.8e-06 56.6 36 63.9
ATR0767G227 Amborella trichopoda HOM05D003338 ORTHO05D004042 2.4e-06 56.2 36 58.3
CSS0021773 Camellia sinensis var. sinensis HOM05D003338 ORTHO05D004042 2.4e-06 56.2 36 61.1
QL11p025287 Quercus lobata HOM05D003338 ORTHO05D004042 2.4e-06 56.2 36 63.9
CiPaw.06G158100 Carya illinoinensis HOM05D003338 ORTHO05D004042 3.1e-06 55.8 36 58.3
CDE04G3172 Ceratophyllum demersum HOM05D003338 ORTHO05D004042 3.1e-06 55.8 36 58.3
ClCG09G016110 Citrullus lanatus HOM05D003338 ORTHO05D004042 3.1e-06 55.8 36 58.3
Nitab4.5_0002095g0080 Nicotiana tabacum HOM05D003338 ORTHO05D004042 3.1e-06 55.8 36 63.9
MELO3C018609.2 Cucumis melo HOM05D003338 ORTHO05D004042 4.1e-06 55.5 36 55.6
CsaV3_7G006850 Cucumis sativus L. HOM05D003338 ORTHO05D004042 4.1e-06 55.5 36 55.6
Medtr4g093600 Medicago truncatula HOM05D003338 ORTHO05D004042 4.1e-06 55.5 36 63.9
Potri.007G116100 Populus trichocarpa HOM05D003338 ORTHO05D004042 4.1e-06 55.5 36 61.1
Thecc.02G128500 Theobroma cacao HOM05D003338 ORTHO05D004042 4.1e-06 55.5 36 61.1
Oeu014197.1 Olea europaea HOM05D003338 ORTHO05D004042 5.3e-06 55.1 42 54.8
SGA_v2.0_scaffold83G26379 Striga asiatica HOM05D003338 ORTHO05D004042 5.3e-06 55.1 40 55.0
HPP92_005521 Vanilla planifolia HOM05D003338 ORTHO05D000776 5.3e-06 55.1 36 50.0
HPP92_005586 Vanilla planifolia HOM05D003338 ORTHO05D004042 5.3e-06 55.1 36 50.0
Lj4g0020285 Lotus japonicus HOM05D003338 ORTHO05D004042 7.0e-06 54.7 36 58.3
Phvul.002G213300 Phaseolus vulgaris HOM05D003338 ORTHO05D004042 7.0e-06 54.7 36 58.3
ATR0752G207 Amborella trichopoda HOM05D003338 ORTHO05D004042 9.1e-06 54.3 36 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2860 Anthoceros agrestis HOM05D003338 ORTHO05D004042 9.1e-06 54.3 34 61.8
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 9.1e-06 54.3 32 84.4
GSVIVG01012511001 Vitis vinifera HOM05D003338 ORTHO05D004042 9.1e-06 54.3 36 63.9


User provided reference genes

Program Settings