Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.1e-266 921.0 710 100.0
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.3e-195 685.6 707 84.7
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.8e-194 682.9 698 84.2
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 2.5e-94 350.9 713 49.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 3.9e-87 327.0 711 55.7
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.1e-68 265.8 758 42.9
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.9e-65 255.0 325 56.6
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 7.9e-56 223.0 195 68.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.3e-55 221.5 198 66.2
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 3.1e-52 211.1 755 38.8
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 4.1e-52 210.7 315 48.3
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 4.5e-51 207.2 337 47.2
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.3e-50 205.7 392 45.2
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.2e-50 204.9 170 66.5
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 5.0e-50 203.8 220 58.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 5.0e-50 203.8 212 61.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.5e-49 202.2 292 49.7
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.2e-49 200.7 254 48.4
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 1.6e-48 198.7 314 47.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.7e-48 198.0 721 39.9
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 2.7e-48 198.0 250 53.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 4.7e-48 197.2 244 53.3
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.7e-48 197.2 226 58.8
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 4.0e-47 194.1 115 85.2
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 5.2e-47 193.7 221 55.2
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 5.2e-47 193.7 206 58.7
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.7e-47 193.4 261 51.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.1e-46 192.6 323 47.4
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.5e-46 192.2 201 58.7
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.0e-46 191.8 206 56.3
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 7.5e-46 189.9 282 48.9
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.3e-45 189.1 234 51.7
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.7e-45 188.7 219 54.8
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.2e-45 188.3 247 50.6
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.2e-45 188.3 247 50.6
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 2.8e-45 188.0 220 55.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.3e-45 186.8 170 63.5
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 8.2e-45 186.4 255 47.8
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 8.2e-45 186.4 237 52.3
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 8.2e-45 186.4 221 55.2
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.4e-44 185.7 281 48.8
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.4e-44 185.7 206 58.3
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.4e-44 185.7 303 46.9
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-44 185.3 205 58.5
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.4e-44 184.9 202 57.9
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 2.4e-44 184.9 220 51.8
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.4e-44 184.9 353 42.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.4e-44 184.9 206 58.7
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.1e-44 184.5 205 56.1
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.1e-44 184.1 217 53.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 7.0e-44 183.3 329 44.4
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 9.1e-44 183.0 283 48.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.2e-43 182.6 212 54.7
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.6e-43 182.2 211 56.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.6e-43 182.2 374 41.2
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.6e-43 182.2 328 42.4
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.0e-43 181.8 205 55.1
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 2.6e-43 181.4 732 34.2
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 3.5e-43 181.0 204 54.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.5e-43 181.0 208 53.8
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.5e-43 181.0 239 53.1
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.5e-43 181.0 146 66.4
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.5e-43 180.6 239 53.1
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 7.7e-43 179.9 145 66.2
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-42 179.5 215 53.0
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.0e-42 179.5 215 53.0
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.0e-42 179.5 198 54.0
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.2e-42 178.3 257 48.6
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.2e-42 178.3 338 43.2
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.0e-42 177.2 205 50.7
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 5.0e-42 177.2 199 51.8
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 5.0e-42 177.2 199 50.8
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 6.5e-42 176.8 216 53.2
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.5e-41 175.6 114 76.3
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.9e-41 175.3 230 47.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.9e-41 175.3 143 68.5
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 5.5e-41 173.7 202 52.5
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 7.2e-41 173.3 110 79.1
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 7.2e-41 173.3 238 50.0
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.6e-40 172.2 357 41.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.6e-40 172.2 146 67.1
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.7e-40 170.6 207 54.1
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 6.1e-40 170.2 109 78.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 8.0e-40 169.9 214 53.3
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.0e-40 169.9 209 53.1
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-39 169.5 151 64.9
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-39 169.5 209 52.6
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.0e-39 169.5 129 69.0
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 2.3e-39 168.3 272 44.9
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.0e-39 167.5 151 64.9
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 5.2e-39 167.2 210 52.4
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.2e-39 167.2 114 74.6
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 6.8e-39 166.8 106 78.3
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 6.8e-39 166.8 106 78.3
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 8.8e-39 166.4 212 53.3
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.2e-38 166.0 251 45.4
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-38 165.2 113 75.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.0e-38 165.2 364 42.0
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.0e-38 165.2 357 41.2
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 4.4e-38 164.1 347 38.6
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 5.7e-38 163.7 216 49.5
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 7.5e-38 163.3 149 62.4
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 9.8e-38 162.9 114 74.6
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.4e-36 159.1 131 66.4
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.8e-36 158.7 214 48.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.6e-35 155.6 192 51.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 2.0e-35 155.2 193 49.7
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.7e-35 154.8 162 54.3
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.7e-35 153.3 338 40.8
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 6.5e-34 150.2 170 49.4
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 7.2e-33 146.7 155 55.5
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.6e-30 138.3 148 57.4
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.6e-30 138.3 148 57.4
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.6e-30 138.3 99 74.7
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 5.7e-30 137.1 93 74.2
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 7.5e-30 136.7 91 72.5
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.8e-28 132.1 131 61.1
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.4e-28 131.7 113 57.5
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 4.1e-28 131.0 81 80.2
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.2e-27 129.4 289 38.1
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.6e-27 129.0 140 53.6
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 7.7e-27 126.7 112 63.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.0e-26 126.3 119 55.5
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.8e-26 124.4 112 62.5
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.1e-25 122.9 105 61.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.5e-25 121.7 232 40.5
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 5.6e-25 120.6 218 43.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 4.7e-24 117.5 173 50.3
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.1e-24 117.1 187 42.8
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.8e-23 115.5 102 56.9
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 5.2e-23 114.0 108 57.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.0e-22 112.1 107 55.1
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 3.4e-22 111.3 104 55.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 5.7e-22 110.5 108 55.6
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 7.5e-22 110.2 107 56.1
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 2.9e-21 108.2 108 54.6
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.7e-21 107.8 104 57.7
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 3.7e-21 107.8 104 55.8
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 5.4e-20 104.0 109 52.3
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 7.0e-20 103.6 672 42.9
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.0e-20 103.6 101 56.4
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.5e-19 101.3 120 50.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 6.6e-18 97.1 158 41.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.3e-17 94.7 707 33.1
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 5.6e-17 94.0 102 48.0
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.2e-16 92.8 109 46.8
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.6e-16 92.4 173 40.5
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.2e-15 87.4 63 76.2
Oeu026037.1 Olea europaea HOM05D064875 ORTHO05D004564 3.4e-14 84.7 214 36.4
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 4.4e-14 84.3 94 45.7
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 5.8e-14 84.0 53 77.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 7.5e-14 83.6 113 42.5
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 2.2e-13 82.0 67 59.7
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 4.9e-13 80.9 53 73.6
Oeu007489.1 Olea europaea HOM05D064875 ORTHO05D004564 8.3e-13 80.1 228 33.3
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 9.2e-12 76.6 162 33.3
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.2e-12 76.6 225 36.0
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.6e-11 75.9 172 39.0
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 7.8e-11 73.6 202 34.2
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-10 73.2 272 33.8
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.7e-10 72.4 90 48.9
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 1.6e-08 65.9 64 50.0
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 3.6e-08 64.7 63 57.1
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.7e-08 64.3 150 37.3
vmacro00641 Vaccinium macrocarpon HOM05D009134 ORTHO05D011284 4.7e-08 64.3 143 40.6
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.1e-07 63.2 189 32.8
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 4.0e-07 61.2 49 57.1


User provided reference genes

Program Settings