Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.5e-42 174.1 84 100.0
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.7e-31 137.5 84 81.0
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.4e-29 131.0 84 81.0
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 6.2e-23 110.5 72 80.6
Nitab4.5_0000172g0940 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.3e-22 108.6 67 82.1
Nitab4.5_0001121g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.9e-17 91.3 65 76.9
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 5.6e-16 87.4 77 57.1
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 5.6e-16 87.4 77 57.1
Nitab4.5_0007800g0030 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.6e-15 84.7 48 85.4
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 1.4e-14 82.8 84 48.8
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 1.8e-14 82.4 84 52.4
Nitab4.5_0001985g0050 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.4e-14 82.0 47 85.1
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 5.8e-13 77.4 84 50.0
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 9.9e-13 76.6 84 50.0
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 9.9e-13 76.6 84 50.0
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 2.2e-12 75.5 73 52.1
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 2.2e-12 75.5 73 52.1
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 2.2e-12 75.5 77 49.4
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 3.8e-12 74.7 84 48.8
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 3.8e-12 74.7 84 48.8
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 8.4e-12 73.6 84 47.6
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 1.1e-11 73.2 84 47.6
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 1.1e-11 73.2 84 47.6
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 1.1e-11 73.2 84 47.6
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 1.1e-11 73.2 84 47.6
Ah.10g028250 Amaranthus hybridus HOM05D008283 ORTHO05D009928 4.1e-11 71.2 68 57.4
Ah.10g028800 Amaranthus hybridus HOM05D008283 ORTHO05D009928 4.1e-11 71.2 68 57.4
AUR62042329 Chenopodium quinoa HOM05D008283 ORTHO05D009928 4.1e-11 71.2 68 57.4
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 4.1e-11 71.2 77 45.5
Medtr1g041535 Medicago truncatula HOM05D008283 ORTHO05D009928 7.1e-11 70.5 79 45.6
AUR62002477 Chenopodium quinoa HOM05D008283 ORTHO05D009928 2.1e-10 68.9 68 55.9
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 2.1e-10 68.9 77 40.3
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 3.5e-10 68.2 77 41.6
Hma1.2p1_0904F.1_g235230 Hydrangea macrophylla HOM05D008283 ORTHO05D009928 3.5e-10 68.2 60 60.0
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 4.6e-10 67.8 68 55.9
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 6.0e-10 67.4 79 45.6
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 6.0e-10 67.4 79 45.6
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 6.0e-10 67.4 79 45.6
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 1.3e-09 66.2 73 42.5
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.3e-09 66.2 73 42.5
Nitab4.5_0002418g0110 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.3e-09 65.5 76 46.1
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 6.6e-09 63.9 68 48.5
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.1e-08 63.2 76 43.4
TPR.G935 Trifolium pratense HOM05D008283 ORTHO05D009928 1.2e-07 59.7 67 40.3
Gohir.A11G200616 Gossypium hirsutum HOM05D008283 ORTHO05D009928 6.2e-07 57.4 61 44.3
Nitab4.5_0000664g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 6.2e-07 57.4 75 44.0
Potri.007G061701 Populus trichocarpa HOM05D008283 ORTHO05D009928 6.2e-07 57.4 43 60.5
SabraMtG0004000 Salix brachista HOM05D008283 ORTHO05D009928 6.2e-07 57.4 43 60.5
AT2G07820 Arabidopsis thaliana HOM05D008283 ORTHO05D009928 8.1e-07 57.0 86 39.5
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 8.1e-07 57.0 83 37.3
Nitab4.5_0000362g0080 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.8e-06 55.8 68 45.6
PGR028G0007 Punica granatum HOM05D008283 ORTHO05D009928 1.8e-06 55.8 75 38.7
unitig_87.g27963 Utricularia gibba HOM05D008283 ORTHO05D009928 2.4e-06 55.5 66 42.4
Ca_17166_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 4.0e-06 54.7 67 35.8
Ca_30751_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 4.0e-06 54.7 67 35.8
ATR0273G001 Amborella trichopoda HOM05D017454 ORTHO05D009928 6.9e-06 53.9 84 39.3
Nitab4.5_0006895g0050 Nicotiana tabacum HOM05D008283 ORTHO05D282936 6.9e-06 53.9 35 68.6


User provided reference genes

Program Settings