Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.3e-180 636.3 330 100.0
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.4e-176 620.2 330 97.0
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 2.8e-159 565.5 331 88.8
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.6e-159 565.1 330 88.2
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 8.0e-159 563.9 331 88.5
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.0e-158 561.6 331 88.5
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.4e-155 553.1 332 88.0
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-155 553.1 329 87.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 6.4e-124 448.0 335 72.5
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.8e-119 432.6 332 69.6
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.8e-118 429.9 334 69.2
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.5e-117 426.8 333 69.7
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 3.8e-116 422.2 333 69.1
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.8e-116 422.2 335 68.4
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.1e-115 420.6 334 68.3
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.6e-113 411.4 329 67.5
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.3e-112 408.7 331 66.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 5.6e-112 408.3 334 64.7
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 4.8e-111 405.2 334 64.7
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 4.8e-111 405.2 334 65.0
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.8e-110 403.3 338 63.9
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 4.0e-110 402.1 335 64.8
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.6e-109 399.4 333 65.8
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 9.9e-109 397.5 331 66.2
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.2e-108 396.4 335 64.5
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.9e-108 396.0 335 64.5
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 3.8e-108 395.6 337 64.4
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 4.9e-108 395.2 334 62.6
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 8.4e-108 394.4 334 62.6
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.4e-108 394.4 334 64.4
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.4e-107 393.7 335 63.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.9e-107 393.3 335 63.9
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.4e-107 392.9 330 65.2
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 2.4e-107 392.9 335 62.7
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.9e-105 385.6 328 64.6
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.1e-104 384.0 340 62.1
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.5e-104 383.6 337 61.1
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.5e-104 383.6 335 62.1
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 1.5e-104 383.6 387 55.6
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 5.6e-104 381.7 335 63.3
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 4.8e-103 378.6 327 63.9
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.1e-102 377.5 360 60.0
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 9.0e-102 374.4 341 60.7
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.0e-101 373.2 335 62.4
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 4.5e-101 372.1 334 60.8
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.2e-100 369.8 334 59.9
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 2.2e-100 369.8 334 62.9
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.9e-100 369.4 334 59.9
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 8.4e-100 367.9 335 60.0
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 4.2e-99 365.5 339 59.9
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 5.5e-99 365.2 334 61.7
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 5.5e-99 365.2 335 60.3
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.7e-98 362.8 334 60.5
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 4.6e-98 362.1 334 59.9
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 4.6e-98 362.1 330 59.1
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.0e-98 361.7 340 60.3
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 6.0e-98 361.7 341 60.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.0e-97 360.9 340 62.1
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.3e-97 360.5 278 67.3
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 3.0e-97 359.4 323 59.1
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.1e-96 357.5 339 57.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.5e-96 357.1 323 58.5
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.9e-96 356.7 334 60.2
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 1.9e-96 356.7 277 66.4
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 3.3e-96 355.9 323 59.8
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 4.3e-96 355.5 339 61.1
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.3e-96 355.5 334 61.1
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.4e-96 354.8 334 61.1
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 7.4e-96 354.8 346 57.8
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 9.6e-96 354.4 278 66.5
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.3e-95 354.0 336 58.3
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.6e-95 353.6 323 58.8
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.1e-95 353.2 340 59.4
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.8e-95 352.1 323 58.2
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 8.2e-95 351.3 342 57.0
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.4e-94 349.7 339 57.2
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.4e-94 349.7 334 60.2
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 4.0e-94 349.0 338 58.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.3e-94 348.6 342 56.7
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.2e-93 347.4 342 56.4
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.2e-93 347.4 342 57.0
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.5e-93 347.1 343 58.3
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 3.4e-93 345.9 342 57.9
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 3.4e-93 345.9 365 55.3
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.7e-92 343.6 339 57.8
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.9e-92 342.8 334 58.4
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.9e-92 342.8 332 56.3
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.5e-91 339.7 346 56.1
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.7e-90 336.3 333 57.7
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 5.7e-88 328.6 247 74.5
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 2.8e-87 326.2 323 60.1
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 4.8e-87 325.5 344 54.4
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.1e-86 324.3 305 59.0
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-86 324.3 334 55.1
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 2.4e-86 323.2 323 59.4
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.4e-86 323.2 352 54.3
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.2e-85 320.9 333 55.3
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 7.7e-85 318.2 330 55.2
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.0e-84 317.8 326 53.4
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 3.2e-83 312.8 328 55.2
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 4.2e-83 312.4 339 53.7
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 4.2e-83 312.4 339 53.7
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 4.2e-83 312.4 339 53.7
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.2e-82 310.8 337 52.5
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.2e-82 310.8 273 57.9
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.6e-82 310.5 336 52.7
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 3.6e-82 309.3 337 53.1
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 4.6e-82 308.9 335 54.0
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.5e-80 303.9 333 50.5
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 7.4e-80 301.6 378 48.4
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-79 300.8 330 53.6
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.7e-79 300.4 333 52.6
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 2.8e-79 299.7 335 51.0
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.8e-79 299.7 333 53.5
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 6.3e-79 298.5 249 66.3
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 8.2e-79 298.1 339 51.9
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 8.2e-79 298.1 339 51.9
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 1.8e-78 297.0 220 66.8
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 4.1e-78 295.8 238 62.2
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 6.9e-78 295.0 340 51.5
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 3.8e-76 289.3 337 50.7
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.2e-75 286.2 330 51.8
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 7.2e-75 285.0 335 50.4
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 9.4e-75 284.6 335 49.3
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 5.7e-72 275.4 340 48.5
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.7e-71 273.9 335 51.3
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.2e-71 273.5 315 51.1
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 2.8e-71 273.1 340 48.2
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.8e-71 272.3 340 48.8
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 8.2e-71 271.6 329 49.5
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.2e-69 267.7 341 46.0
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.2e-69 267.7 316 50.9
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.9e-67 260.4 369 44.7
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.7e-63 247.3 232 60.3
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.4e-62 243.4 298 48.3
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.0e-61 240.4 319 47.6
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.0e-57 228.0 311 48.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.3e-55 221.1 218 60.1
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 2.8e-55 219.9 264 48.9
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.8e-54 217.2 160 66.9
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 3.5e-53 213.0 164 63.4
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 4.5e-53 212.6 165 64.8
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.5e-51 207.6 333 43.8
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.1e-50 202.2 338 43.8
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 6.8e-49 198.7 332 39.8
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.8e-47 193.4 205 59.5
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.3e-47 192.2 205 59.5
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.4e-46 191.0 205 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 6.6e-44 182.2 234 47.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 7.2e-43 178.7 172 61.6
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.6e-42 177.6 339 37.8
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.6e-42 176.4 174 62.6
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.5e-40 168.7 145 54.5
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.8e-38 164.1 208 50.5
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 2.0e-37 160.6 134 56.7
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.6e-36 155.2 127 56.7
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.3e-35 153.3 147 61.2
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 2.8e-34 150.2 209 46.4
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 2.4e-30 137.1 139 53.2
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 1.7e-28 131.0 121 54.5
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.7e-26 122.9 130 57.7
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.4e-24 116.7 102 52.0
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.1e-22 111.7 138 50.0
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.9e-19 100.9 97 52.6
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 2.8e-18 97.1 225 32.9
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.4e-15 85.5 304 30.3
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.4e-14 84.0 88 47.7
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 3.0e-12 77.0 229 30.6
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.5e-11 74.7 55 60.0
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 2.1e-10 70.9 73 56.2


User provided reference genes

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