Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.5e-217 758.4 378 100.0
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 5.1e-194 681.0 380 90.8
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.5e-193 679.5 376 91.0
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 8.2e-192 673.7 379 89.4
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 7.0e-191 670.6 379 89.2
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 5.0e-181 637.9 340 90.9
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.6e-150 536.6 369 74.0
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 2.3e-149 532.7 384 71.6
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.3e-149 532.7 386 71.0
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 9.5e-148 527.3 384 70.3
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 8.1e-147 524.2 380 70.3
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.3e-146 522.7 386 70.2
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 3.1e-146 522.3 376 69.9
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 6.8e-146 521.2 382 69.1
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 2.2e-144 516.2 366 72.1
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 6.4e-144 514.6 384 69.0
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.1e-143 513.8 380 69.2
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.7e-141 506.5 345 73.3
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 8.6e-141 504.2 383 66.8
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.1e-140 503.8 358 69.6
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 1.5e-140 503.4 378 70.6
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 1.9e-140 503.1 350 68.6
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.5e-140 502.7 370 68.9
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 2.5e-140 502.7 446 61.7
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 5.6e-140 501.5 383 67.1
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 9.5e-140 500.7 387 66.7
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.6e-139 500.0 385 64.9
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 8.1e-139 497.7 358 69.3
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.1e-138 497.3 372 67.7
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 8.9e-138 494.2 370 67.3
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 8.9e-138 494.2 369 65.9
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 8.9e-138 494.2 354 67.8
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 2.6e-137 492.7 378 65.3
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 2.6e-137 492.7 371 66.3
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 3.4e-137 492.3 360 67.5
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 4.4e-137 491.9 343 69.7
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 4.4e-137 491.9 381 66.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 4.4e-137 491.9 368 66.0
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 5.8e-137 491.5 384 66.7
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 5.8e-137 491.5 371 65.8
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 5.8e-137 491.5 383 65.8
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 7.6e-137 491.1 352 69.3
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 7.6e-137 491.1 384 66.1
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 9.9e-137 490.7 385 66.2
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.9e-137 490.7 383 65.8
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.3e-136 490.3 353 68.3
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 1.7e-136 490.0 370 67.6
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 3.8e-136 488.8 377 65.3
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 4.9e-136 488.4 374 66.3
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 4.9e-136 488.4 374 65.0
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 5.4e-135 485.0 372 65.6
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 5.4e-135 485.0 385 63.6
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 7.1e-135 484.6 356 67.7
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.2e-134 483.8 376 64.9
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.6e-134 483.4 381 64.3
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 2.1e-134 483.0 370 64.9
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.5e-134 482.3 370 66.2
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 3.5e-134 482.3 343 68.8
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 4.6e-134 481.9 378 63.5
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 6.0e-134 481.5 343 67.9
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 6.0e-134 481.5 367 66.8
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 7.8e-134 481.1 339 69.0
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.3e-133 480.3 377 62.6
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.7e-133 479.9 343 67.9
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 3.9e-133 478.8 367 66.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 3.9e-133 478.8 374 64.4
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 5.1e-133 478.4 359 63.8
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 5.1e-133 478.4 367 64.6
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 6.6e-133 478.0 343 67.6
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 6.6e-133 478.0 375 64.5
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 8.6e-133 477.6 367 66.2
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 8.6e-133 477.6 343 66.8
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.1e-132 477.2 360 65.6
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.9e-132 476.5 343 66.8
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.9e-132 476.5 343 66.8
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.9e-132 476.5 344 66.9
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 1.2e-131 473.8 340 66.2
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 8.1e-131 471.1 362 64.9
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 1.8e-130 469.9 396 61.4
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.4e-130 469.5 394 62.2
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.0e-130 468.8 343 67.1
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 8.9e-130 467.6 369 62.6
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 8.9e-130 467.6 369 63.1
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 2.0e-129 466.5 381 65.4
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.8e-129 464.9 399 60.2
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.8e-129 464.9 369 62.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 8.4e-128 461.1 343 65.0
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 8.4e-128 461.1 340 66.5
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.9e-127 459.9 379 64.9
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.4e-127 459.5 384 65.4
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 7.1e-127 458.0 360 65.3
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.1e-126 456.4 380 61.8
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.0e-125 454.1 396 62.6
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 1.3e-125 453.8 374 60.4
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 1.7e-125 453.4 438 58.0
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 4.8e-123 445.3 364 62.6
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 6.2e-123 444.9 355 62.3
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.1e-122 444.1 432 56.7
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 7.6e-121 438.0 357 60.8
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.3e-120 437.2 341 65.1
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.1e-119 434.1 345 61.4
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.3e-117 427.2 306 69.0
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 1.1e-116 424.1 380 58.9
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.6e-116 421.0 399 56.4
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.6e-116 421.0 411 56.0
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 3.6e-115 419.1 338 61.2
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 3.6e-115 419.1 390 57.4
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 4.8e-115 418.7 340 63.2
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 3.1e-114 416.0 358 58.4
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 9.0e-114 414.5 354 61.0
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-113 414.1 402 55.5
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 7.6e-113 411.4 375 59.2
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 8.4e-112 407.9 357 62.5
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 8.4e-112 407.9 541 44.2
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 2.4e-111 406.4 388 57.5
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 7.1e-111 404.8 376 56.9
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 2.1e-110 403.3 370 57.3
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 1.0e-109 401.0 319 62.7
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 2.5e-108 396.4 368 57.1
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.1e-106 389.4 518 45.2
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 2.6e-105 386.3 206 91.3
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 2.5e-103 379.8 354 58.2
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.9e-101 372.5 379 55.7
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.5e-100 370.5 344 57.3
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 2.4e-98 363.2 261 70.5
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.7e-96 357.1 268 68.3
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.8e-96 355.9 273 63.4
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.5e-95 353.2 271 67.9
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 4.8e-91 339.0 239 69.5
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.8e-90 337.0 364 50.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 4.1e-90 335.9 353 51.6
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 9.1e-90 334.7 257 66.1
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.0e-89 333.6 400 48.2
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 6.1e-86 322.0 298 57.0
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.5e-84 317.4 343 51.6
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 8.2e-83 311.6 237 65.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.7e-80 303.9 353 46.5
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 6.5e-72 275.4 282 54.3
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.0e-69 268.1 361 44.9
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 3.3e-68 263.1 524 35.5
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 4.1e-66 256.1 193 65.8
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.0e-61 239.6 351 42.7
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 4.0e-53 213.0 310 41.6
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 2.0e-52 210.7 189 52.9
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 8.3e-51 205.3 259 45.6
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.0e-38 162.2 402 32.3
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.1e-37 160.2 173 51.4
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 5.2e-37 159.5 309 34.3
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 5.8e-36 156.0 147 57.8
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 2.4e-34 150.6 331 31.4
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.9e-26 124.4 115 52.2
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 5.4e-26 122.9 94 66.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 8.6e-24 115.5 63 87.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.4e-21 107.5 81 66.7
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 3.5e-17 93.6 56 71.4
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 2.5e-15 87.4 44 88.6
CAN.G1235.22 Capsicum annuum HOM05D000680 ORTHO05D000738 1.5e-12 78.2 57 70.2
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.4e-10 70.9 43 74.4
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.2e-09 68.6 135 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 1.9e-07 61.2 39 64.1


User provided reference genes

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