Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 9.8e-150 533.5 280 100.0
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.7e-99 365.9 244 82.0
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 3.0e-98 362.5 252 79.4
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 5.1e-98 361.7 252 79.0
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.8e-88 329.3 252 71.0
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.5e-86 323.6 233 75.5
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 3.4e-86 322.4 345 55.7
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.9e-85 319.3 346 55.8
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.9e-85 319.3 347 55.3
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 3.8e-85 318.9 252 67.9
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 5.0e-85 318.5 344 54.1
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.2e-84 314.7 344 53.8
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.2e-84 314.7 344 53.8
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 2.3e-82 309.7 214 77.6
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.0e-82 309.3 344 53.2
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 5.1e-82 308.5 311 57.9
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.7e-82 308.1 344 52.3
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 6.7e-82 308.1 344 52.3
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 8.8e-82 307.8 367 52.0
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 3.3e-81 305.8 249 67.5
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 5.7e-81 305.1 344 52.6
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 7.4e-81 304.7 256 67.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 7.4e-81 304.7 343 52.2
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.2e-80 303.1 255 66.7
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.8e-80 302.8 244 68.9
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.1e-79 300.8 252 66.3
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.1e-79 299.3 252 65.1
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.3e-79 298.5 245 66.9
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 5.3e-79 298.5 251 66.5
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.5e-78 297.0 344 51.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.0e-78 296.6 344 52.0
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 2.6e-78 296.2 253 66.0
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 3.5e-78 295.8 252 64.7
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 3.5e-78 295.8 252 64.7
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 4.5e-78 295.4 252 65.1
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 4.5e-78 295.4 354 53.1
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 5.9e-78 295.0 310 55.2
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 7.7e-78 294.7 344 51.7
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.0e-77 294.3 252 66.7
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.3e-77 293.9 344 51.5
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.2e-77 293.1 247 66.0
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 2.2e-77 293.1 255 64.7
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.1e-76 290.8 244 65.2
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.5e-76 290.4 247 65.6
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.9e-76 290.0 252 65.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.9e-76 290.0 357 49.9
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 3.2e-76 289.3 243 66.3
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 7.2e-76 288.1 252 62.3
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 7.2e-76 288.1 252 65.5
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 7.2e-76 288.1 253 62.8
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 9.4e-76 287.7 252 65.5
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 9.4e-76 287.7 344 52.3
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.2e-75 287.3 252 65.5
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 4.7e-75 285.4 252 63.1
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.0e-74 284.3 252 64.7
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.4e-74 283.9 343 49.3
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.4e-74 283.9 255 60.8
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.8e-74 283.5 186 80.1
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.3e-74 283.1 243 60.9
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 5.2e-74 282.0 248 63.7
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.1e-73 280.8 244 66.0
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.5e-73 280.4 311 53.7
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 3.3e-73 279.3 243 60.5
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 3.3e-73 279.3 252 63.1
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 4.4e-73 278.9 245 62.0
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 4.4e-73 278.9 255 63.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 5.7e-73 278.5 206 66.0
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.7e-73 278.5 311 54.0
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 7.4e-73 278.1 253 60.9
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 9.7e-73 277.7 243 60.1
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 9.7e-73 277.7 243 59.7
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 9.7e-73 277.7 243 60.1
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.3e-72 277.3 243 60.1
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.7e-72 276.9 243 60.1
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.7e-72 276.9 245 62.9
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.7e-72 276.9 343 49.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 2.2e-72 276.6 243 60.5
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 2.8e-72 276.2 243 59.7
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 2.8e-72 276.2 243 59.7
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 2.8e-72 276.2 243 59.7
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.8e-72 276.2 255 60.8
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 2.8e-72 276.2 243 60.1
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 3.7e-72 275.8 255 62.4
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 4.8e-72 275.4 253 60.5
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 6.3e-72 275.0 205 69.8
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 8.2e-72 274.6 243 59.3
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.1e-71 274.2 202 66.8
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.1e-71 274.2 339 49.0
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.4e-71 273.9 243 59.3
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.8e-71 273.5 247 63.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.4e-71 273.1 248 63.7
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 4.1e-71 272.3 243 58.8
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 7.0e-71 271.6 257 60.3
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 9.1e-71 271.2 249 63.5
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.0e-70 270.0 243 61.7
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 2.0e-70 270.0 245 63.7
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 5.9e-70 268.5 200 66.5
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 7.7e-70 268.1 325 50.5
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 6.5e-69 265.0 414 42.8
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.5e-68 263.8 247 62.3
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.5e-68 263.8 309 50.8
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 9.4e-68 261.2 252 58.7
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.6e-67 260.4 239 60.3
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 2.7e-67 259.6 344 48.8
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 4.0e-66 255.8 252 59.1
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.4e-63 246.5 274 53.3
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 4.1e-63 245.7 335 47.5
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 1.1e-60 237.7 241 56.0
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.5e-57 227.3 300 50.0
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 5.7e-57 225.3 344 44.8
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.3e-53 214.2 175 67.4
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.3e-53 213.4 183 62.8
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.8e-53 212.6 430 41.6
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 4.2e-52 209.1 123 89.4
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.6e-51 207.2 164 67.1
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 4.0e-50 202.6 273 43.6
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 2.0e-46 190.3 160 67.5
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.8e-42 177.2 110 82.7
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 2.0e-41 173.7 183 55.7
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.1e-39 167.9 283 44.5
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 3.0e-37 159.8 228 44.7
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 6.6e-37 158.7 222 43.7
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.3e-36 156.0 232 40.9
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.1e-34 151.4 143 58.7
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 3.7e-32 142.9 130 60.8
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.7e-30 136.7 122 60.7
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 7.3e-28 128.6 95 72.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 2.1e-27 127.1 118 56.8
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.1e-27 127.1 204 40.7
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 6.2e-27 125.6 90 68.9
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.0e-22 109.0 94 61.7
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.6e-21 105.5 95 64.2
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 8.6e-21 105.1 105 60.0
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 7.6e-17 92.0 132 40.2
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 1.4e-15 87.8 112 39.3
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 2.7e-14 83.6 144 38.9
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 4.8e-11 72.8 38 89.5
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 6.2e-11 72.4 41 82.9
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 2.6e-09 67.0 38 78.9
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 5.4e-07 59.3 38 71.1
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 2.1e-06 57.4 28 92.9


User provided reference genes

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