Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.3e-119 431.4 229 100.0
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.3e-111 404.8 229 94.8
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 6.4e-107 391.0 229 90.8
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.2e-105 386.7 229 90.0
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.3e-99 366.7 230 84.3
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 5.5e-90 334.7 230 75.2
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.5e-90 334.7 228 77.6
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 2.7e-89 332.4 229 76.4
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.6e-89 332.0 229 76.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.1e-87 327.0 238 72.7
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 2.5e-87 325.9 235 71.5
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.7e-86 323.2 227 77.5
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.7e-86 323.2 235 73.6
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.8e-86 321.6 235 73.6
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.4e-85 320.1 232 66.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.9e-85 317.8 233 74.7
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 6.9e-85 317.8 227 74.9
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 4.5e-84 315.1 234 66.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 5.9e-84 314.7 234 67.5
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 7.7e-84 314.3 233 67.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.2e-83 312.8 261 62.1
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 6.5e-83 311.2 231 70.1
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.1e-82 310.5 229 71.6
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.9e-82 309.7 229 72.1
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.6e-81 306.6 225 72.4
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.7e-81 305.8 235 69.4
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.7e-81 305.8 232 73.7
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 6.1e-81 304.7 220 74.1
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 7.9e-81 304.3 230 71.3
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 5.1e-80 301.6 229 68.6
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-79 299.7 225 65.8
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.0e-79 299.7 225 65.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.6e-79 299.3 223 71.7
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.6e-79 299.3 223 71.7
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 9.7e-79 297.4 218 67.4
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 9.7e-79 297.4 223 64.6
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.3e-78 297.0 228 71.1
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-78 296.6 225 64.0
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-78 296.2 230 69.1
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.2e-78 296.2 226 70.8
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.7e-78 295.4 225 64.0
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 6.3e-78 294.7 225 64.0
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 6.3e-78 294.7 229 70.7
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.3e-78 294.7 225 70.7
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 8.2e-78 294.3 222 64.4
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.1e-77 293.9 235 68.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.4e-77 293.5 219 65.8
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-77 293.1 224 63.8
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.8e-77 293.1 224 62.5
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.4e-77 292.7 224 63.4
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 2.4e-77 292.7 225 63.1
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.1e-77 292.4 229 69.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 7.0e-77 291.2 229 62.0
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 9.1e-77 290.8 235 60.4
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 9.1e-77 290.8 223 66.8
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 9.1e-77 290.8 238 59.2
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.2e-76 290.4 221 72.9
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.5e-76 290.0 240 60.0
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.5e-76 290.0 226 62.4
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.5e-76 290.0 223 65.0
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-76 289.7 225 63.6
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.0e-76 289.7 225 63.6
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.0e-76 289.7 225 69.3
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 2.0e-76 289.7 227 70.9
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.6e-76 289.3 225 65.8
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.6e-76 289.3 233 60.9
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 5.9e-76 288.1 232 67.7
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 1.7e-75 286.6 230 62.2
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.7e-75 286.6 225 69.3
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 2.9e-75 285.8 226 65.5
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 3.8e-75 285.4 226 69.5
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 8.5e-75 284.3 222 62.6
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.9e-74 283.1 226 61.1
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.5e-74 282.7 146 92.5
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.5e-74 282.7 222 71.6
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 4.2e-74 282.0 221 68.8
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.5e-74 281.6 221 64.7
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 7.2e-74 281.2 224 71.0
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 9.4e-74 280.8 225 67.6
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.2e-73 280.4 232 62.9
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.2e-73 280.4 232 66.4
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.6e-73 280.0 232 62.9
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.7e-73 279.3 218 69.3
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 3.6e-73 278.9 224 70.5
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.1e-73 278.1 224 67.4
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 8.0e-73 277.7 205 66.8
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 8.0e-73 277.7 223 67.7
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.4e-72 276.9 233 65.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.4e-72 276.9 226 65.0
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.3e-72 276.2 227 68.7
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 2.3e-72 276.2 232 67.2
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 5.2e-72 275.0 237 63.3
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 6.7e-72 274.6 225 67.1
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-71 273.5 234 62.8
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 3.3e-71 272.3 246 56.9
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 3.3e-71 272.3 231 62.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 3.3e-71 272.3 220 69.5
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 1.7e-70 270.0 250 62.0
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.2e-70 269.6 251 60.6
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 4.8e-70 268.5 176 69.9
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 8.2e-70 267.7 232 65.1
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 1.4e-69 266.9 220 68.2
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-69 266.5 219 63.0
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.8e-69 266.5 220 64.1
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.4e-69 266.2 236 62.3
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 2.4e-69 266.2 221 64.3
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 4.1e-69 265.4 271 54.6
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 7.0e-69 264.6 219 58.4
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 9.1e-69 264.2 185 68.1
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-68 263.8 215 62.8
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.0e-68 263.1 219 62.1
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 4.5e-68 261.9 269 58.7
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 2.2e-67 259.6 225 59.1
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.0e-67 258.5 247 60.7
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.1e-66 257.3 215 59.5
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.9e-66 256.5 165 69.7
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.6e-65 252.3 217 64.1
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 3.0e-64 249.2 227 54.6
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-64 249.2 227 54.6
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.0e-64 249.2 227 54.6
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.2e-64 248.4 227 54.2
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 6.8e-64 248.1 170 68.2
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 6.8e-64 248.1 224 54.9
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 1.7e-62 243.4 142 77.5
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.2e-62 243.0 227 53.7
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 3.1e-61 239.2 239 51.9
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 7.0e-61 238.0 219 55.3
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.2e-60 237.3 229 54.6
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.0e-60 236.5 254 52.4
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.7e-60 236.1 256 50.8
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.9e-59 232.6 197 66.0
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 6.5e-59 231.5 177 67.2
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.2e-58 229.2 216 57.4
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.5e-58 228.4 242 52.9
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 9.4e-58 227.6 240 52.5
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.2e-56 221.9 147 70.7
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.2e-55 220.7 141 73.0
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.1e-53 214.2 143 68.5
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.8e-51 205.7 268 46.6
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.3e-50 202.6 131 73.3
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.6e-47 193.0 98 91.8
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 9.8e-47 191.0 130 70.8
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.7e-46 190.3 148 58.8
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-46 190.3 127 69.3
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.0e-45 184.9 127 68.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 7.0e-45 184.9 127 68.5
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 5.6e-42 175.3 147 54.4
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 4.1e-37 159.1 131 64.1
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.6e-33 147.1 99 67.7
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.0e-33 144.8 238 39.5
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.9e-29 133.7 97 86.6
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 6.8e-24 115.2 98 59.2
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.4e-23 112.8 177 37.9
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 2.9e-22 109.8 115 49.6
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.7e-19 100.5 123 39.0
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 8.6e-19 98.2 154 33.8
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 2.8e-17 93.2 166 34.3
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 2.4e-16 90.1 79 54.4
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 2.9e-14 83.2 135 32.6
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.8e-14 82.8 117 35.0
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 4.2e-13 79.3 83 63.9
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 9.3e-13 78.2 94 55.3
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.6e-12 77.4 89 61.8
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.7e-12 76.6 91 56.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 4.6e-12 75.9 80 51.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 3.6e-09 66.2 73 47.9
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.6e-07 60.1 81 39.5


User provided reference genes

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