Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 2475.7 1244 100.0
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1993.4 1274 79.6
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1952.9 1263 78.8
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1860.9 1196 79.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1274 70.3
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1654.4 1270 67.4
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1633.6 1267 66.9
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1625.9 1265 67.1
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1618.2 1265 65.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1610.9 1278 65.6
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1610.1 1269 66.0
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1607.0 1274 65.7
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1264 65.7
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1605.9 1270 65.4
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1605.1 1265 65.3
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1601.3 1269 65.2
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1601.3 1268 65.6
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1600.5 1268 65.5
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1600.1 1300 64.4
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1599.3 1266 65.7
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1598.2 1268 65.8
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1598.2 1310 64.3
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1268 65.5
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1593.2 1276 66.2
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1590.9 1267 65.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1590.5 1268 65.1
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1585.5 1266 65.4
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1583.9 1267 64.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1581.6 1268 64.9
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1581.6 1273 64.5
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1577.0 1317 63.1
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1573.9 1264 64.5
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1573.5 1276 64.2
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1266 65.2
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1569.3 1274 63.9
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1568.1 1268 63.5
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1568.1 1283 63.4
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1566.6 1265 64.0
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1565.1 1266 64.2
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1565.1 1274 63.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1564.7 1270 64.3
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1560.0 1270 64.3
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1559.3 1280 63.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1559.3 1278 63.6
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1557.0 1267 63.8
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1557.0 1264 64.2
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1556.2 1267 63.6
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1555.0 1268 63.6
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1555.0 1268 63.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1550.0 1298 62.6
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1548.1 1267 63.5
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1547.3 1275 63.4
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1546.2 1279 63.7
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1544.6 1335 61.1
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1542.7 1268 63.6
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1541.2 1270 62.6
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1541.2 1270 62.8
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1536.5 1273 63.2
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1535.8 1261 63.5
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1534.6 1268 62.9
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1256 64.3
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1532.3 1265 63.8
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1526.5 1327 61.1
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1520.0 1268 62.1
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1510.7 1270 62.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1494.9 1269 61.9
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1492.2 1275 61.2
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1489.6 1269 61.9
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1489.6 1277 61.7
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1489.2 1277 61.3
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1479.5 1198 64.9
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1476.8 1324 59.4
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1476.1 1279 60.4
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1470.3 1199 64.1
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1469.1 1307 60.1
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1466.8 1278 60.7
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1460.7 1271 60.4
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1458.7 1269 60.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1447.2 1239 62.1
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1446.8 895 82.1
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1437.9 1265 60.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1437.2 1267 60.3
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1436.8 1265 60.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1436.4 1265 60.1
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1433.3 1262 59.9
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1427.2 1280 59.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1423.3 1183 63.0
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1408.7 1265 59.5
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1380.2 1177 62.1
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1369.4 1021 69.2
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1358.6 1036 66.7
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1354.0 1220 59.5
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1341.6 1266 56.1
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1307.4 1272 55.4
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1306.6 1269 55.6
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1265.0 1297 53.4
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 0.0e+00 1261.5 801 79.5
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 0.0e+00 1241.5 823 76.9
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1224.5 1052 62.3
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1085.1 1275 49.4
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 1.7e-311 1073.2 1275 46.7
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 1.7e-310 1069.7 981 57.4
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 4.9e-310 1068.1 1271 47.4
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.3e-294 1016.9 901 59.8
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 1.6e-284 983.4 933 58.0
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 2.9e-270 936.0 1240 43.6
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 4.4e-266 922.2 658 71.3
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 2.0e-247 860.1 1225 42.9
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 6.2e-212 742.3 671 61.4
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 9.9e-210 734.9 480 78.5
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 9.0e-195 685.3 1342 35.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.1e-192 678.3 498 72.1
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 1.9e-189 667.5 544 64.0
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 5.9e-170 602.8 618 52.4
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 3.8e-169 600.1 637 51.5
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 3.6e-167 593.6 1100 37.5
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.7e-161 574.7 1273 32.1
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.6e-125 454.5 332 67.8
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.3e-113 415.6 1154 29.5
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.1e-110 406.0 694 40.5
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 8.1e-95 353.2 276 66.3
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.1e-94 352.8 341 54.0
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.0e-82 310.5 267 57.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.0e-82 310.5 267 57.7
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 4.0e-78 297.7 226 68.6
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 9.9e-77 293.1 221 69.2
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.3e-63 247.3 220 59.1
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.1e-54 218.4 200 58.0
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 4.5e-53 214.5 233 53.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 4.5e-45 188.0 237 48.5
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.7e-42 178.7 161 57.1
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.3e-40 171.8 161 57.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.4e-40 170.6 104 76.9
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 2.8e-39 168.7 186 52.7
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.4e-33 149.8 1210 21.6
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 2.6e-32 145.6 121 62.8
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.9e-28 132.1 102 69.6
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.1e-26 124.4 119 57.1
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.8e-25 122.9 120 54.2
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 5.2e-25 121.3 120 53.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 3.6e-18 98.6 132 40.9
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 1.7e-15 89.7 158 38.0
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.8e-14 86.3 93 49.5
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 4.5e-13 81.6 123 42.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 5.9e-13 81.3 214 29.4
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.7e-12 79.7 139 36.7
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.8e-12 78.6 61 65.6
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 6.6e-12 77.8 154 37.0
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 7.3e-11 74.3 103 42.7
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.8e-10 72.4 49 71.4
PGSC0003DMG400046841 Solanum tuberosum HOM05D014102 ORTHO05D022958 6.1e-10 71.2 100 45.0
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 1.0e-09 70.5 77 45.5
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 6.8e-09 67.8 120 36.7
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 2.4e-06 59.3 47 57.4
CAN.G494.1 Capsicum annuum HOM05D014102 ORTHO05D016168 5.4e-06 58.2 69 49.3


User provided reference genes

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