Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000245g0050 Nicotiana tabacum HOM05D003300 ORTHO05D003731 8.7e-33 142.9 65 100.0
Nitab4.5_0004070g0020 Nicotiana tabacum HOM05D003300 ORTHO05D003731 8.4e-12 73.2 36 88.9
Nitab4.5_0006089g0020 Nicotiana tabacum HOM05D003300 ORTHO05D003731 8.4e-12 73.2 36 88.9
CAN.G644.17 Capsicum annuum HOM05D003300 ORTHO05D003731 2.5e-11 71.6 36 86.1
Peaxi162Scf00002g00549 Petunia axillaris HOM05D003300 ORTHO05D003731 2.5e-11 71.6 36 86.1
Solyc11g067010.2 Solanum lycopersicum HOM05D003300 ORTHO05D003731 2.5e-11 71.6 36 86.1
Sopen11g026720 Solanum pennellii HOM05D003300 ORTHO05D003731 2.5e-11 71.6 36 86.1
PGSC0003DMG400026544 Solanum tuberosum HOM05D003300 ORTHO05D003731 5.5e-11 70.5 36 83.3
CANSAT64G0589 Cannabis sativa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
CANSAT80G1600 Cannabis sativa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
CDE02G4062 Ceratophyllum demersum HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
ClCG04G009850 Citrullus lanatus HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
COL.COLO4_07507 Corchorus olitorius HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
MELO3C024524.2 Cucumis melo HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
CsaV3_6G040490 Cucumis sativus L. HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Duzib068G0395 Durio zibethinus HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Duzib205G0671 Durio zibethinus HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FvH4_6g18160 Fragaria vesca HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FAN02G0859 Fragaria x ananassa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FAN05G0605 Fragaria x ananassa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FAN05G4476 Fragaria x ananassa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FAN09G0305 Fragaria x ananassa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FAN09G3635 Fragaria x ananassa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FAN14G0984 Fragaria x ananassa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
FAN15G2446 Fragaria x ananassa HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Gohir.A08G165300 Gossypium hirsutum HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Gohir.D08G184000 Gossypium hirsutum HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Gorai.004G193300 Gossypium raimondii HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
MD00G1001900 Malus domestica HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
MD06G1015500 Malus domestica HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
MD12G1021200 Malus domestica HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
MD14G1018400 Malus domestica HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Prupe.7G115100 Prunus persica HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
RcHm_v2.0_Chr3g0472461 Rosa chinensis HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
RcHm_v2.0_Chr6g0267281 Rosa chinensis HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Thecc.03G242600 Theobroma cacao HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
TWI74G1100 Tripterygium wilfordii HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
GSVIVG01017759001 Vitis vinifera HOM05D003300 ORTHO05D003731 2.3e-09 65.1 36 77.8
Aqoxy2G04091 Aquilegia oxysepala HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
Aqoxy4G02846 Aquilegia oxysepala HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
Cfa016565 Carpinus fangiana HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
CiPaw.09G010100 Carya illinoinensis HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
Haze_19564 Corylus avellana HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
Eucgr.A01529 Eucalyptus grandis HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
PGR004G1144 Punica granatum HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
PGR042G2923 Punica granatum HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
QL07p039876 Quercus lobata HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
Sed0009117 Sechium edule HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
TAR633G0358 Trochodendron aralioides HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
TAR636G2590 Trochodendron aralioides HOM05D003300 ORTHO05D003731 3.9e-09 64.3 36 77.8
MSTRG.10357 Avicennia marina HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
CSS0015211 Camellia sinensis var. sinensis HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
CSS0020416 Camellia sinensis var. sinensis HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
CANSAT80G1837 Cannabis sativa HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 72.2
CBR_g8275 Chara braunii HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Cc06_g20940 Coffea canephora HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Cc11_g05680 Coffea canephora HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
DCAR_020772 Daucus carota HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Dinv31656 Davidia involucrata HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Duzib084G0743 Durio zibethinus HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
ECA248G1032 Erigeron canadensis HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Oeu009903.1 Olea europaea HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Peaxi162Scf00290g00013 Petunia axillaris HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Psat4g031600 Pisum sativum HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
Rhsim03G0078600 Rhododendron simsii HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
vmacro07387 Vaccinium macrocarpon HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
vmacro18023 Vaccinium macrocarpon HOM05D003300 ORTHO05D003731 8.7e-09 63.2 36 75.0
MSTRG.26646 Avicennia marina HOM05D003300 ORTHO05D003731 1.1e-08 62.8 36 75.0
CiPaw.10G006900 Carya illinoinensis HOM05D003300 ORTHO05D003731 1.1e-08 62.8 36 75.0
Pp3c2_27530 Physcomitrium patens HOM05D003300 ORTHO05D003731 1.1e-08 62.8 36 75.0
EL10Ac5g10554 Beta vulgaris HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
AUR62042925 Chenopodium quinoa HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
ClCG01G012550 Citrullus lanatus HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
MELO3C004759.2 Cucumis melo HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
CsaV3_1G014600 Cucumis sativus L. HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
Migut.L01767 Erythranthe guttata HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 75.0
HanXRQChr13g0404851 Helianthus annuus HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 75.0
Lsat_1_v5_gn_1_48520 Lactuca sativa HOM05D000146 ORTHO05D003731 1.5e-08 62.4 36 75.0
Lsat_1_v5_gn_2_22600 Lactuca sativa HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 75.0
MBI15_g43462_MAGBIO Magnolia biondii HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 75.0
Manes.08G022800 Manihot esculenta HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 75.0
Manes.11G159100 Manihot esculenta HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
Potri.004G186600 Populus trichocarpa HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
Potri.009G147000 Populus trichocarpa HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
Sabra09G0113500 Salix brachista HOM05D003300 ORTHO05D003731 1.5e-08 62.4 59 55.9
Sabra09G0116000 Salix brachista HOM05D003300 ORTHO05D003731 1.5e-08 62.4 59 55.9
Hund20862 Selenicereus undatus HOM05D003300 ORTHO05D003731 1.5e-08 62.4 36 72.2
Thecc.09G289500 Theobroma cacao HOM05D003300 ORTHO05D003731 1.5e-08 62.4 39 71.8
Actinidia08425 Actinidia chinensis HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
ATR0705G200 Amborella trichopoda HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
ATR0796G338 Amborella trichopoda HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
arahy.Tifrunner.gnm1.ann1.FWV4H3 Arachis hypogaea HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
arahy.Tifrunner.gnm1.ann1.XVD0AF Arachis hypogaea HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Ca_17996_v3 Cicer arietinum L. HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Glyma.05G151700 Glycine max HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Glyma.08G108500 Glycine max HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
HanXRQChr11g0351191 Helianthus annuus HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Hma1.2p1_0324F.1_g125440 Hydrangea macrophylla HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Lj4g0008043 Lotus japonicus HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Lalb_Chr06g0163851 Lupinus albus HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Medtr8g083120 Medicago truncatula HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Oeu018728.1 Olea europaea HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 72.2
Oeu056905.1 Olea europaea HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 72.2
Phvul.001G030700 Phaseolus vulgaris HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Phvul.011G135400 Phaseolus vulgaris HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
Psat7g075360 Pisum sativum HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
VMungo1127G1081 Vigna mungo HOM05D003300 ORTHO05D003731 1.9e-08 62.0 36 75.0
CAN.G824.8 Capsicum annuum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
FvH4_5g19590 Fragaria vesca HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 75.0
Mapoly0001s0351 Marchantia polymorpha HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 75.0
Nitab4.5_0004567g0070 Nicotiana tabacum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
PSO250G0039 Papaver somniferum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
PSO384G4502 Papaver somniferum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
PSO541G4575 Papaver somniferum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
PSO675G1480 Papaver somniferum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
Pp3c1_11070 Physcomitrium patens HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
SalBow5G0056 Salvia bowleyana HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
Solyc09g009300.4 Solanum lycopersicum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
Sopen09g004040 Solanum pennellii HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
PGSC0003DMG400002671 Solanum tuberosum HOM05D003300 ORTHO05D003731 2.5e-08 61.6 36 72.2
AL7G33010 Arabidopsis lyrata HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
AT4G21110 Arabidopsis thaliana HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
BcaC01g00711 Brassica carinata HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
BcaNung06969 Brassica carinata HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
A03p52640 Brassica napus HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
A08p15260 Brassica napus HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
C03p83500 Brassica napus HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
C07p51080 Brassica napus HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
BolC3t20631H Brassica oleracea HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
BolC7t45608H Brassica oleracea HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
BraA08t33504Z Brassica rapa HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
Carub.0007s2031 Capsella rubella HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
Ca_21584_v3 Cicer arietinum L. HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Lj5g0008246 Lotus japonicus HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Medtr4g117260 Medicago truncatula HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Nn1g06159 Nelumbo nucifera HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 72.2
Os01g0857700 Oryza sativa ssp. japonica HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Os04g0646100 Oryza sativa ssp. japonica HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Os05g0446300 Oryza sativa ssp. japonica HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Os12g0149800 Oryza sativa ssp. japonica HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
QL01p013392 Quercus lobata HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 72.2
Sp7g19200 Schrenkiella parvula HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 69.4
Zm00001eb147370 Zea mays HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Zm00001eb147380 Zea mays HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Zm00001eb366930 Zea mays HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
Zm00001eb366990 Zea mays HOM05D003300 ORTHO05D003731 3.3e-08 61.2 36 75.0
AUR62033071 Chenopodium quinoa HOM05D003300 ORTHO05D003731 4.3e-08 60.8 36 69.4
COL.COLO4_19950 Corchorus olitorius HOM05D003300 ORTHO05D003731 4.3e-08 60.8 36 69.4
DCAR_009145 Daucus carota HOM05D003300 ORTHO05D003731 4.3e-08 60.8 36 72.2
Rhsim09G0145100 Rhododendron simsii HOM05D003300 ORTHO05D003731 4.3e-08 60.8 36 72.2
SEGI_35347 Sequoiadendron giganteum HOM05D003300 ORTHO05D003731 4.3e-08 60.8 31 80.6
THA.LOC104800547 Tarenaya hassleriana HOM05D003300 ORTHO05D003731 4.3e-08 60.8 36 69.4
THA.LOC104826409 Tarenaya hassleriana HOM05D003300 ORTHO05D003731 4.3e-08 60.8 36 69.4
Atru.chr8.1602 Acer truncatum HOM05D003300 ORTHO05D003731 5.7e-08 60.5 36 72.2
Ciclev10003137m.g Citrus clementina HOM05D003300 ORTHO05D003731 5.7e-08 60.5 36 72.2
FAN18G1123 Fragaria x ananassa HOM05D003300 ORTHO05D003731 5.7e-08 60.5 36 72.2
BcaC09g51259 Brassica carinata HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 69.4
BcaNung03842 Brassica carinata HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 69.4
BcaNung03844 Brassica carinata HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 69.4
A01p12470 Brassica napus HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 69.4
C01p15050 Brassica napus HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 69.4
BolC1t01454H Brassica oleracea HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 69.4
BraA01t01193Z Brassica rapa HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 69.4
TPR.G20125 Trifolium pratense HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 72.2
TPR.G6889 Trifolium pratense HOM05D003300 ORTHO05D003731 7.4e-08 60.1 36 72.2
CARHR227700 Cardamine hirsuta HOM05D003300 ORTHO05D003731 9.7e-08 59.7 36 66.7
Ciclev10029519m.g Citrus clementina HOM05D003300 ORTHO05D003731 9.7e-08 59.7 36 69.4
Glyma.07G130900 Glycine max HOM05D003300 ORTHO05D003731 9.7e-08 59.7 36 72.2
Nitab4.5_0000658g0040 Nicotiana tabacum HOM05D003300 ORTHO05D003731 1.3e-07 59.3 65 50.8
AagrBONN_evm.TU.Sc2ySwM_117.625 Anthoceros agrestis HOM05D003300 ORTHO05D003731 1.6e-07 58.9 36 72.2
Cfa010070 Carpinus fangiana HOM05D003300 ORTHO05D003731 1.6e-07 58.9 36 66.7
BcaC01g00714 Brassica carinata HOM05D003300 ORTHO05D003731 2.2e-07 58.5 33 72.7
Ciclev10010633m.g Citrus clementina HOM05D003300 ORTHO05D003731 2.2e-07 58.5 36 69.4
Atru.chr3.3355 Acer truncatum HOM05D003300 ORTHO05D003731 4.8e-07 57.4 36 66.7
arahy.Tifrunner.gnm1.ann1.C0PQLN Arachis hypogaea HOM05D003300 ORTHO05D003731 6.3e-07 57.0 36 69.4
arahy.Tifrunner.gnm1.ann1.H3D12P Arachis hypogaea HOM05D003300 ORTHO05D003731 6.3e-07 57.0 36 69.4
Thhalv10026504m.g Eutrema salsugineum HOM05D003300 ORTHO05D003731 6.3e-07 57.0 36 63.9
Thhalv10028987m.g Eutrema salsugineum HOM05D003300 ORTHO05D003731 6.3e-07 57.0 36 63.9
unitig_8.g4963 Utricularia gibba HOM05D003300 ORTHO05D003731 1.4e-06 55.8 31 71.0
SMO356G0371 Selaginella moellendorffii HOM05D003300 ORTHO05D003731 1.8e-06 55.5 36 63.9
Sc07g0005410 Simmondsia chinensis HOM05D003300 ORTHO05D003731 1.8e-06 55.5 36 69.4
SHI13554 Sapria himalayana HOM05D003300 ORTHO05D003731 3.1e-06 54.7 36 66.7
Nitab4.5_0008877g0060 Nicotiana tabacum HOM05D003300 ORTHO05D283051 4.1e-06 54.3 32 75.0
Hund19971 Selenicereus undatus HOM05D003300 ORTHO05D003731 6.9e-06 53.5 36 66.7
Nitab4.5_0002446g0160 Nicotiana tabacum HOM05D003300 ORTHO05D003731 9.0e-06 53.1 29 75.9


User provided reference genes

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