Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 2.3e-56 221.9 102 100.0
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 7.7e-28 127.1 77 76.6
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 7.7e-28 127.1 77 76.6
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 2.0e-23 112.5 76 68.4
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.6e-23 112.1 83 68.7
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 7.0e-21 104.0 76 57.9
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 3.5e-20 101.7 80 57.5
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.0e-19 100.1 81 53.1
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.3e-19 99.0 76 55.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 6.6e-19 97.4 82 53.7
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 7.3e-18 94.0 55 80.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 7.3e-18 94.0 80 51.2
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 7.3e-18 94.0 83 50.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 9.5e-18 93.6 78 53.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.1e-17 92.4 84 53.6
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.1e-17 92.4 84 53.6
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.1e-17 92.4 84 53.6
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.4e-16 89.7 82 46.3
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.4e-16 89.7 76 51.3
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.4e-16 89.7 76 51.3
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.3e-16 89.0 85 48.2
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 3.0e-16 88.6 74 51.4
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 3.0e-16 88.6 85 47.1
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 4.0e-16 88.2 91 46.2
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 5.2e-16 87.8 80 47.5
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 8.9e-16 87.0 80 47.5
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.2e-15 86.7 74 51.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.2e-15 86.7 82 46.3
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.2e-15 86.7 82 46.3
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.0e-15 85.9 84 48.8
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.4e-15 85.1 82 46.3
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 5.8e-15 84.3 82 46.3
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 7.5e-15 84.0 77 54.5
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 7.5e-15 84.0 84 48.8
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 7.5e-15 84.0 85 45.9
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 9.8e-15 83.6 53 54.7
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.3e-14 83.2 79 48.1
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.3e-14 83.2 79 48.1
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.3e-14 83.2 84 45.2
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.7e-14 82.8 82 52.4
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.7e-14 82.8 82 52.4
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.7e-14 82.8 80 48.8
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.2e-14 82.4 76 48.7
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.9e-14 82.0 82 50.0
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 3.7e-14 81.6 85 45.9
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.7e-14 81.6 84 44.0
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 3.7e-14 81.6 84 44.0
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.7e-14 81.6 76 44.7
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 3.7e-14 81.6 81 48.1
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 4.9e-14 81.3 74 48.6
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 6.4e-14 80.9 55 60.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 6.4e-14 80.9 82 43.9
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.3e-14 80.5 81 45.7
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.1e-13 80.1 82 45.1
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.4e-13 79.7 94 44.7
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-13 79.7 86 50.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-13 79.7 81 54.3
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.4e-13 79.7 87 47.1
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.8e-13 79.3 76 47.4
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.1e-13 78.2 80 47.5
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 5.4e-13 77.8 84 45.2
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 5.4e-13 77.8 78 48.7
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.4e-13 77.8 79 50.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 9.2e-13 77.0 81 46.9
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 9.2e-13 77.0 79 48.1
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 9.2e-13 77.0 81 43.2
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.6e-12 76.3 86 47.7
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 2.0e-12 75.9 73 53.4
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 3.5e-12 75.1 76 47.4
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.0e-11 73.6 82 46.3
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.0e-11 73.6 78 46.2
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.7e-11 72.8 58 48.3
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.3e-11 72.4 82 42.7
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 3.0e-11 72.0 78 39.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.9e-11 71.6 74 43.2
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.9e-11 71.6 86 44.2
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 5.0e-11 71.2 83 41.0
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 8.6e-11 70.5 84 40.5
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.1e-10 70.1 82 42.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-10 70.1 81 48.1
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-10 69.7 80 37.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.9e-10 69.3 78 44.9
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.9e-10 69.3 77 45.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.5e-10 68.9 81 46.9
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.3e-10 68.2 85 45.9
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.6e-10 67.8 84 42.9
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 7.3e-10 67.4 84 38.1
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 9.5e-10 67.0 75 42.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.2e-09 66.6 75 45.3
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.6e-09 66.2 84 45.2
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.6e-09 66.2 75 46.7
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 2.1e-09 65.9 74 43.2
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.1e-09 65.9 80 37.5
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 3.6e-09 65.1 78 44.9
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 4.7e-09 64.7 80 45.0
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 4.7e-09 64.7 80 46.2
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 4.7e-09 64.7 80 46.2
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 6.2e-09 64.3 78 44.9
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 6.2e-09 64.3 83 44.6
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 8.0e-09 63.9 86 40.7
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.1e-08 63.5 75 40.0
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.1e-08 63.5 91 38.5
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.4e-08 63.2 77 40.3
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.4e-08 63.2 75 38.7
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.8e-08 62.8 75 45.3
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.8e-08 62.8 80 40.0
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 2.3e-08 62.4 74 37.8
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 2.3e-08 62.4 74 37.8
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.3e-08 62.4 74 37.8
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 2.3e-08 62.4 74 37.8
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.1e-08 62.0 75 45.3
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.1e-08 62.0 75 45.3
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.1e-08 62.0 77 44.2
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 3.1e-08 62.0 86 44.2
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.0e-08 61.6 75 45.3
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 5.2e-08 61.2 95 35.8
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 8.9e-08 60.5 74 39.2
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 8.9e-08 60.5 95 34.7
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.0e-07 59.3 87 35.6
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.6e-07 58.9 75 36.0
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 2.6e-07 58.9 74 41.9
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.6e-07 58.9 75 44.0
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.6e-07 58.9 75 44.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 4.4e-07 58.2 83 34.9
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.8e-07 57.8 83 48.2
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 2.2e-06 55.8 88 36.4
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.9e-06 55.5 80 37.5


User provided reference genes

Program Settings