Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000243g0020 Nicotiana tabacum HOM05D000558 ORTHO05D284696 1.4e-66 256.1 129 100.0
Nitab4.5_0003263g0040 Nicotiana tabacum HOM05D000558 ORTHO05D001857 1.1e-31 140.2 178 50.0
Nitab4.5_0001574g0130 Nicotiana tabacum HOM05D000558 ORTHO05D001857 1.5e-28 129.8 209 44.5
Peaxi162Scf00378g00011 Petunia axillaris HOM05D000558 ORTHO05D001857 9.5e-23 110.5 185 42.7
Peaxi162Scf00378g00010 Petunia axillaris HOM05D000558 ORTHO05D001857 8.9e-21 104.0 217 37.8
Solyc12g098540.2 Solanum lycopersicum HOM05D000558 ORTHO05D001857 5.9e-17 91.3 210 34.3
Peaxi162Scf00378g00116 Petunia axillaris HOM05D000558 ORTHO05D001857 1.5e-15 86.7 204 35.3
Sopen00g009330 Solanum pennellii HOM05D000558 ORTHO05D001857 2.9e-11 72.4 44 77.3
CAN.G767.19 Capsicum annuum HOM05D000558 ORTHO05D001857 7.0e-10 67.8 38 84.2
Nitab4.5_0002787g0010 Nicotiana tabacum HOM05D000558 ORTHO05D001857 1.6e-09 66.6 37 86.5
Os11g0126400 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D001857 5.0e-08 61.6 70 48.6
Oeu014727.2 Olea europaea HOM05D000558 ORTHO05D001857 1.1e-07 60.5 46 65.2
Glyma.16G043500 Glycine max HOM05D000558 ORTHO05D001857 1.5e-07 60.1 55 54.5
Oeu000722.1 Olea europaea HOM05D000558 ORTHO05D001857 1.5e-07 60.1 46 63.0
Solyc02g032560.3 Solanum lycopersicum HOM05D000558 ORTHO05D001857 1.5e-07 60.1 197 29.4
Actinidia22098 Actinidia chinensis HOM05D000558 ORTHO05D001857 1.9e-07 59.7 47 59.6
MSTRG.11377 Avicennia marina HOM05D000558 ORTHO05D001857 1.9e-07 59.7 35 77.1
Solyc02g032550.3 Solanum lycopersicum HOM05D000558 ORTHO05D001857 1.9e-07 59.7 35 77.1
Solyc02g081980.3 Solanum lycopersicum HOM05D000558 ORTHO05D001857 1.9e-07 59.7 46 63.0
arahy.Tifrunner.gnm1.ann1.A6ZG0G Arachis hypogaea HOM05D000558 ORTHO05D001857 2.5e-07 59.3 131 31.3
Hma1.2p1_0640F.1_g194150 Hydrangea macrophylla HOM05D000558 ORTHO05D001857 2.5e-07 59.3 37 73.0
Nitab4.5_0000389g0070 Nicotiana tabacum HOM05D000558 ORTHO05D001857 2.5e-07 59.3 35 77.1
Psat3g090840 Pisum sativum HOM05D000558 ORTHO05D001857 2.5e-07 59.3 44 63.6
Nitab4.5_0000348g0120 Nicotiana tabacum HOM05D000558 ORTHO05D001857 3.3e-07 58.9 46 60.9
Nitab4.5_0001070g0050 Nicotiana tabacum HOM05D000558 ORTHO05D001857 3.3e-07 58.9 46 60.9
RcHm_v2.0_Chr3g0448171 Rosa chinensis HOM05D000558 ORTHO05D001857 3.3e-07 58.9 40 67.5
Migut.G01309 Erythranthe guttata HOM05D000558 ORTHO05D001857 4.3e-07 58.5 44 61.4
FvH4_3g25500 Fragaria vesca HOM05D000558 ORTHO05D001857 4.3e-07 58.5 40 67.5
FAN11G1574 Fragaria x ananassa HOM05D000558 ORTHO05D001857 4.3e-07 58.5 40 67.5
FAN21G2215 Fragaria x ananassa HOM05D000558 ORTHO05D001857 4.3e-07 58.5 40 67.5
FAN25G2108 Fragaria x ananassa HOM05D000558 ORTHO05D001857 4.3e-07 58.5 40 67.5
MD12G1000500 Malus domestica HOM05D000558 ORTHO05D001857 4.3e-07 58.5 40 67.5
MD14G1000200 Malus domestica HOM05D000558 ORTHO05D001857 4.3e-07 58.5 40 67.5
Peaxi162Scf00036g01811 Petunia axillaris HOM05D000558 ORTHO05D001857 4.3e-07 58.5 35 80.0
Peaxi162Scf00459g00123 Petunia axillaris HOM05D000558 ORTHO05D001857 4.3e-07 58.5 56 51.8
Ah.11g044250 Amaranthus hybridus HOM05D000558 ORTHO05D001857 5.6e-07 58.2 38 71.1
arahy.Tifrunner.gnm1.ann1.USLU8T Arachis hypogaea HOM05D000558 ORTHO05D001857 5.6e-07 58.2 44 61.4
CiPaw.10G000100 Carya illinoinensis HOM05D000558 ORTHO05D001857 5.6e-07 58.2 37 70.3
Oeu036764.1 Olea europaea HOM05D000558 ORTHO05D001857 5.6e-07 58.2 37 73.0
PGSC0003DMG400007335 Solanum tuberosum HOM05D000558 ORTHO05D001857 5.6e-07 58.2 193 29.0
Aqoxy5G01470 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
arahy.Tifrunner.gnm1.ann1.15VHK9 Arachis hypogaea HOM05D000558 ORTHO05D001857 7.3e-07 57.8 41 63.4
Cfa021586 Carpinus fangiana HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
Ca_08247_v3 Cicer arietinum L. HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
Lj1g0024802 Lotus japonicus HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
Lalb_Chr14g0364321 Lupinus albus HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
Lalb_Chr22g0359471 Lupinus albus HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
PSO170G4601 Papaver somniferum HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
PSO700G0254 Papaver somniferum HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
Potri.019G031200 Populus trichocarpa HOM05D000558 ORTHO05D001857 7.3e-07 57.8 44 59.1
PGSC0003DMG400029363 Solanum tuberosum HOM05D000558 ORTHO05D001857 7.3e-07 57.8 56 50.0
TAR629G1822 Trochodendron aralioides HOM05D000558 ORTHO05D001857 7.3e-07 57.8 38 68.4
HanXRQChr02g0054261 Helianthus annuus HOM05D000558 ORTHO05D001857 9.5e-07 57.4 35 74.3
Prupe.7G001000 Prunus persica HOM05D000558 ORTHO05D001857 9.5e-07 57.4 40 65.0
Aqoxy6G02332 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
MSTRG.18038 Avicennia marina HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
EL10Ac2g03645 Beta vulgaris HOM05D000558 ORTHO05D001857 1.2e-06 57.0 38 71.1
CSS0039347 Camellia sinensis var. sinensis HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
AUR62020703 Chenopodium quinoa HOM05D000558 ORTHO05D001857 1.2e-06 57.0 44 63.6
AUR62028021 Chenopodium quinoa HOM05D000558 ORTHO05D001857 1.2e-06 57.0 44 63.6
Ciclev10019963m.g Citrus clementina HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Haze_19392 Corylus avellana HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Glyma.16G043700 Glycine max HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Lalb_Chr21g0317101 Lupinus albus HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
MBI19_g24052_MAGBIO Magnolia biondii HOM05D000558 ORTHO05D001857 1.2e-06 57.0 55 50.9
Medtr7g085090 Medicago truncatula HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Nitab4.5_0001110g0120 Nicotiana tabacum HOM05D000558 ORTHO05D001857 1.2e-06 57.0 137 29.9
PSO541G4859 Papaver somniferum HOM05D000558 ORTHO05D001857 1.2e-06 57.0 38 68.4
PSO675G3498 Papaver somniferum HOM05D000558 ORTHO05D001857 1.2e-06 57.0 38 68.4
Phvul.001G096900 Phaseolus vulgaris HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Potri.013G053500 Populus trichocarpa HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Potri.019G031000 Populus trichocarpa HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
QL07p020804 Quercus lobata HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Sabra13G0048500 Salix brachista HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Sabra19G0037600 Salix brachista HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Sabra19G0040100 Salix brachista HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Sc06g0001420 Simmondsia chinensis HOM05D000558 ORTHO05D001857 1.2e-06 57.0 38 68.4
Sopen02g026610 Solanum pennellii HOM05D000558 ORTHO05D001857 1.2e-06 57.0 204 27.9
TPR.G5868 Trifolium pratense HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
VMungo1383G1207 Vigna mungo HOM05D000558 ORTHO05D001857 1.2e-06 57.0 35 71.4
Zm00001eb112690 Zea mays HOM05D000558 ORTHO05D001857 1.2e-06 57.0 67 43.3
MSTRG.12818 Avicennia marina HOM05D000558 ORTHO05D001857 1.6e-06 56.6 44 59.1
CANSAT78G1816 Cannabis sativa HOM05D000558 ORTHO05D001857 1.6e-06 56.6 38 65.8
Cpa.g.sc676.2 Carica papaya HOM05D000558 ORTHO05D001857 1.6e-06 56.6 37 67.6
ClCG03G011020 Citrullus lanatus HOM05D000558 ORTHO05D001857 1.6e-06 56.6 66 47.0
ClCG04G005210 Citrullus lanatus HOM05D000558 ORTHO05D001857 1.6e-06 56.6 44 56.8
COL.COLO4_20561 Corchorus olitorius HOM05D000558 ORTHO05D001857 1.6e-06 56.6 41 61.0
MELO3C008792.2 Cucumis melo HOM05D000558 ORTHO05D001857 1.6e-06 56.6 44 56.8
Phvul.004G077550 Phaseolus vulgaris HOM05D000558 ORTHO05D001857 1.6e-06 56.6 38 65.8
Potri.013G053700 Populus trichocarpa HOM05D000558 ORTHO05D001857 1.6e-06 56.6 38 65.8
Sed0003409 Sechium edule HOM05D000558 ORTHO05D001857 1.6e-06 56.6 44 56.8
Sed0012083 Sechium edule HOM05D000558 ORTHO05D001857 1.6e-06 56.6 44 56.8
SGA_v2.0_scaffold12G06255 Striga asiatica HOM05D000558 ORTHO05D001857 1.6e-06 56.6 35 71.4
VMungo0464G0040 Vigna mungo HOM05D000558 ORTHO05D001857 1.6e-06 56.6 38 65.8
CANSAT78G2327 Cannabis sativa HOM05D000558 ORTHO05D001857 2.1e-06 56.2 62 45.2
CsaV3_4G013370 Cucumis sativus L. HOM05D000558 ORTHO05D001857 2.1e-06 56.2 38 63.2
Gohir.A06G125200 Gossypium hirsutum HOM05D000558 ORTHO05D001857 2.1e-06 56.2 46 56.5
Gohir.A08G175850 Gossypium hirsutum HOM05D000558 ORTHO05D001857 2.1e-06 56.2 46 56.5
Gohir.A12G190500 Gossypium hirsutum HOM05D000558 ORTHO05D001857 2.1e-06 56.2 46 56.5
Gohir.A13G105750 Gossypium hirsutum HOM05D000558 ORTHO05D001857 2.1e-06 56.2 46 56.5
Gohir.A13G105800 Gossypium hirsutum HOM05D000558 ORTHO05D001857 2.1e-06 56.2 46 56.5
Gohir.D13G170300 Gossypium hirsutum HOM05D000558 ORTHO05D001857 2.1e-06 56.2 46 56.5
Gorai.013G191600 Gossypium raimondii HOM05D000558 ORTHO05D001857 2.1e-06 56.2 46 56.5
Lj1A1139G48 Lonicera japonica HOM05D000558 ORTHO05D001857 2.1e-06 56.2 37 67.6
Atru.chr2.1258 Acer truncatum HOM05D000558 ORTHO05D001857 2.8e-06 55.8 35 71.4
arahy.Tifrunner.gnm1.ann1.KQ8XLR Arachis hypogaea HOM05D000558 ORTHO05D001857 2.8e-06 55.8 35 68.6
CAN.G566.48 Capsicum annuum HOM05D000558 ORTHO05D001857 2.8e-06 55.8 56 50.0
Gohir.A11G205501 Gossypium hirsutum HOM05D000558 ORTHO05D001857 2.8e-06 55.8 46 56.5
SalBow2G1936 Salvia bowleyana HOM05D000558 ORTHO05D001857 2.8e-06 55.8 44 59.1
Solyc12g096560.2 Solanum lycopersicum HOM05D000558 ORTHO05D001857 2.8e-06 55.8 44 59.1
Sopen02g010820 Solanum pennellii HOM05D000558 ORTHO05D001857 2.8e-06 55.8 46 60.9
TPR.G5880 Trifolium pratense HOM05D000558 ORTHO05D001857 2.8e-06 55.8 38 65.8
TPR.G6082 Trifolium pratense HOM05D000558 ORTHO05D001857 2.8e-06 55.8 44 59.1
GSVIVG01038278001 Vitis vinifera HOM05D000558 ORTHO05D001857 2.8e-06 55.8 38 65.8
Zm00001eb111660 Zea mays HOM05D000558 ORTHO05D001857 2.8e-06 55.8 34 73.5
Zm00001eb330840 Zea mays HOM05D000558 ORTHO05D001857 2.8e-06 55.8 34 73.5
CAN.G68.18 Capsicum annuum HOM05D000558 ORTHO05D001857 3.6e-06 55.5 35 68.6
Ca_06697_v3 Cicer arietinum L. HOM05D000558 ORTHO05D001857 3.6e-06 55.5 38 65.8
Cc09_g04810 Coffea canephora HOM05D000558 ORTHO05D001857 3.6e-06 55.5 50 52.0
Dinv14601 Davidia involucrata HOM05D000558 ORTHO05D001857 3.6e-06 55.5 35 68.6
Migut.B00993 Erythranthe guttata HOM05D000558 ORTHO05D001857 3.6e-06 55.5 35 68.6
Glyma.16G043400 Glycine max HOM05D000558 ORTHO05D001857 3.6e-06 55.5 44 63.6
Gohir.A07G055500 Gossypium hirsutum HOM05D000558 ORTHO05D001857 3.6e-06 55.5 46 54.3
Gohir.A13G166800 Gossypium hirsutum HOM05D000558 ORTHO05D001857 3.6e-06 55.5 46 56.5
Nitab4.5_0000668g0070 Nicotiana tabacum HOM05D000558 ORTHO05D001857 3.6e-06 55.5 44 59.1
Peaxi162Scf01205g00190 Petunia axillaris HOM05D000558 ORTHO05D001857 3.6e-06 55.5 44 59.1
PGR042G2533 Punica granatum HOM05D000558 ORTHO05D001857 3.6e-06 55.5 35 68.6
Solyc08g016010.3 Solanum lycopersicum HOM05D000558 ORTHO05D001857 3.6e-06 55.5 35 68.6
Sopen08g006270 Solanum pennellii HOM05D000558 ORTHO05D001857 3.6e-06 55.5 35 68.6
Sopen12g032390 Solanum pennellii HOM05D000558 ORTHO05D001857 3.6e-06 55.5 44 59.1
PGSC0003DMG400007656 Solanum tuberosum HOM05D000558 ORTHO05D001857 3.6e-06 55.5 35 68.6
SGA_v2.0_scaffold51G18864 Striga asiatica HOM05D000558 ORTHO05D001857 3.6e-06 55.5 44 59.1
TPR.G5882 Trifolium pratense HOM05D000558 ORTHO05D001857 3.6e-06 55.5 38 65.8
ATR0681G010 Amborella trichopoda HOM05D000558 ORTHO05D001857 4.7e-06 55.1 38 65.8
Glyma.19G108500 Glycine max HOM05D000558 ORTHO05D001857 4.7e-06 55.1 35 68.6
HanXRQChr02g0054281 Helianthus annuus HOM05D000558 ORTHO05D001857 4.7e-06 55.1 56 48.2
Oeu000405.1 Olea europaea HOM05D000558 ORTHO05D001857 4.7e-06 55.1 38 68.4
Oeu011093.3 Olea europaea HOM05D000558 ORTHO05D001857 4.7e-06 55.1 44 61.4
Psat3g090960 Pisum sativum HOM05D000558 ORTHO05D001857 4.7e-06 55.1 38 65.8
Solyc09g092400.2 Solanum lycopersicum HOM05D000558 ORTHO05D001857 4.7e-06 55.1 68 41.2
Sopen09g035300 Solanum pennellii HOM05D000558 ORTHO05D001857 4.7e-06 55.1 68 41.2
Thecc.05G259500 Theobroma cacao HOM05D000558 ORTHO05D001857 4.7e-06 55.1 84 35.7
HPP92_021144 Vanilla planifolia HOM05D000558 ORTHO05D001857 4.7e-06 55.1 38 65.8
arahy.Tifrunner.gnm1.ann1.83QM18 Arachis hypogaea HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 65.8
CDE04G1071 Ceratophyllum demersum HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 65.8
Duzib128G0242 Durio zibethinus HOM05D000558 ORTHO05D001857 6.2e-06 54.7 35 68.6
Medtr7g085180 Medicago truncatula HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 63.2
Os12g0123500 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D001857 6.2e-06 54.7 66 43.9
Phvul.001G099900 Phaseolus vulgaris HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 63.2
Rhsim01G0001700 Rhododendron simsii HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 60.5
Rhsim04G0085300 Rhododendron simsii HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 60.5
TAR623G1699 Trochodendron aralioides HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 65.8
VMungo1383G0069 Vigna mungo HOM05D000558 ORTHO05D001857 6.2e-06 54.7 38 65.8
arahy.Tifrunner.gnm1.ann1.20DV7G Arachis hypogaea HOM05D000558 ORTHO05D001857 8.1e-06 54.3 38 63.2
Cc09_g04820 Coffea canephora HOM05D000558 ORTHO05D001857 8.1e-06 54.3 34 67.6
Duzib106G1698 Durio zibethinus HOM05D000558 ORTHO05D001857 8.1e-06 54.3 35 68.6
HanXRQChr02g0054321 Helianthus annuus HOM05D000558 ORTHO05D001857 8.1e-06 54.3 38 63.2
Medtr6g033000 Medicago truncatula HOM05D000558 ORTHO05D001857 8.1e-06 54.3 38 63.2
Os07g0682800 Oryza sativa ssp. japonica HOM05D000558 ORTHO05D001857 8.1e-06 54.3 41 61.0
Psat1g096880 Pisum sativum HOM05D000558 ORTHO05D001857 8.1e-06 54.3 49 51.0
Sed0005957 Sechium edule HOM05D000558 ORTHO05D001857 8.1e-06 54.3 56 46.4
Solyc02g032580.3 Solanum lycopersicum HOM05D000558 ORTHO05D001857 8.1e-06 54.3 30 83.3
Zm00001eb015690 Zea mays HOM05D000558 ORTHO05D001857 8.1e-06 54.3 77 40.3


User provided reference genes

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