Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000241g0020 Nicotiana tabacum HOM05D007597 ORTHO05D009608 3.0e-53 211.8 129 100.0
Nitab4.5_0006778g0040 Nicotiana tabacum HOM05D007597 ORTHO05D009608 8.8e-37 157.1 116 81.0
Peaxi162Scf00937g00322 Petunia axillaris HOM05D007597 ORTHO05D009608 9.8e-28 127.1 128 60.2
PGSC0003DMG400026859 Solanum tuberosum HOM05D007597 ORTHO05D009608 3.7e-19 98.6 125 67.2
Solyc03g006540.3 Solanum lycopersicum HOM05D007597 ORTHO05D009608 1.1e-18 97.1 125 63.2
Cc11_g07700 Coffea canephora HOM05D007597 ORTHO05D009608 1.9e-10 69.7 46 80.4
Cfa015029 Carpinus fangiana HOM05D007597 ORTHO05D009608 3.2e-10 68.9 46 73.9
Haze_10869 Corylus avellana HOM05D007597 ORTHO05D009608 3.2e-10 68.9 46 73.9
ECA246G4875 Erigeron canadensis HOM05D007597 ORTHO05D009608 7.0e-10 67.8 50 72.0
Potri.008G135400 Populus trichocarpa HOM05D007597 ORTHO05D009608 7.0e-10 67.8 46 78.3
vmacro08570 Vaccinium macrocarpon HOM05D007597 ORTHO05D009608 7.0e-10 67.8 44 77.3
HanXRQChr17g0550621 Helianthus annuus HOM05D007597 ORTHO05D009608 1.2e-09 67.0 49 67.3
Nn3g20775 Nelumbo nucifera HOM05D007597 ORTHO05D009608 1.2e-09 67.0 46 76.1
Dinv07717 Davidia involucrata HOM05D007597 ORTHO05D009608 1.6e-09 66.6 49 77.6
Lj2g0017292 Lotus japonicus HOM05D007597 ORTHO05D009608 3.5e-09 65.5 45 75.6
Rhsim04G0170700 Rhododendron simsii HOM05D007597 ORTHO05D009608 3.5e-09 65.5 46 69.6
Actinidia38436 Actinidia chinensis HOM05D007597 ORTHO05D009608 4.6e-09 65.1 51 68.6
arahy.Tifrunner.gnm1.ann1.80S20J Arachis hypogaea HOM05D007597 ORTHO05D009608 4.6e-09 65.1 45 71.1
GSVIVG01011651001 Vitis vinifera HOM05D007597 ORTHO05D009608 4.6e-09 65.1 45 75.6
MD13G1019900 Malus domestica HOM05D007597 ORTHO05D009608 6.0e-09 64.7 45 71.1
Sabra08G0103400 Salix brachista HOM05D007597 ORTHO05D009608 6.0e-09 64.7 46 76.1
arahy.Tifrunner.gnm1.ann1.FU0M5P Arachis hypogaea HOM05D007597 ORTHO05D009608 1.0e-08 63.9 45 68.9
Duzib251G0764 Durio zibethinus HOM05D007597 ORTHO05D009608 1.0e-08 63.9 48 68.8
THA.LOC104824124 Tarenaya hassleriana HOM05D007597 ORTHO05D009608 1.0e-08 63.9 52 67.3
TPR.G36945 Trifolium pratense HOM05D007597 ORTHO05D009608 1.0e-08 63.9 45 71.1
CiPaw.06G052900 Carya illinoinensis HOM05D007597 ORTHO05D009608 1.3e-08 63.5 46 73.9
Atru.chr11.909 Acer truncatum HOM05D007597 ORTHO05D009608 1.7e-08 63.2 53 62.3
Thhalv10004999m.g Eutrema salsugineum HOM05D007597 ORTHO05D009608 1.7e-08 63.2 46 71.7
Lsat_1_v5_gn_1_105200 Lactuca sativa HOM05D007597 ORTHO05D009608 2.3e-08 62.8 110 39.1
QL93p0203_0030 Quercus lobata HOM05D007597 ORTHO05D009608 3.0e-08 62.4 120 44.2
TAR371G0144 Trochodendron aralioides HOM05D007597 ORTHO05D009608 3.9e-08 62.0 40 75.0
TWI53G0585 Tripterygium wilfordii HOM05D007597 ORTHO05D009608 5.0e-08 61.6 45 71.1
Aqoxy1G03694 Aquilegia oxysepala HOM05D007597 ORTHO05D009608 6.6e-08 61.2 46 65.2
Psat6g046800 Pisum sativum HOM05D007597 ORTHO05D009608 6.6e-08 61.2 45 68.9
AT2G01755 Arabidopsis thaliana HOM05D007597 ORTHO05D009608 1.1e-07 60.5 43 67.4
Medtr1g032560 Medicago truncatula HOM05D007597 ORTHO05D009608 1.1e-07 60.5 45 68.9
Phvul.003G017900 Phaseolus vulgaris HOM05D007597 ORTHO05D009608 1.1e-07 60.5 46 67.4
VMungo1215G2214 Vigna mungo HOM05D007597 ORTHO05D009608 1.1e-07 60.5 46 67.4
DCAR_030495 Daucus carota HOM05D007597 ORTHO05D009608 1.5e-07 60.1 46 58.7
Prupe.1G334100 Prunus persica HOM05D007597 ORTHO05D009608 1.5e-07 60.1 44 70.5
Sp2g13210 Schrenkiella parvula HOM05D007597 ORTHO05D009608 1.5e-07 60.1 46 69.6
CSS0036739 Camellia sinensis var. sinensis HOM05D007597 ORTHO05D009608 1.9e-07 59.7 50 68.0
AUR62034992 Chenopodium quinoa HOM05D007597 ORTHO05D009608 1.9e-07 59.7 46 67.4
AUR62037405 Chenopodium quinoa HOM05D007597 ORTHO05D009608 1.9e-07 59.7 46 67.4
EL10Ac1g02363 Beta vulgaris HOM05D007597 ORTHO05D009608 2.5e-07 59.3 43 74.4
Lalb_Chr10g0095671 Lupinus albus HOM05D007597 ORTHO05D009608 2.5e-07 59.3 45 68.9
Aa31LG2G8130 Aethionema arabicum HOM05D007597 ORTHO05D009608 3.3e-07 58.9 43 69.8
CARHR144330 Cardamine hirsuta HOM05D007597 ORTHO05D009608 3.3e-07 58.9 45 62.2
Eucgr.G02097 Eucalyptus grandis HOM05D007597 ORTHO05D009608 3.3e-07 58.9 46 69.6
AL5G10880 Arabidopsis lyrata HOM05D007597 ORTHO05D009608 5.6e-07 58.2 40 67.5
A06p44080 Brassica napus HOM05D007597 ORTHO05D009608 7.3e-07 57.8 46 69.6
BraA06t27282Z Brassica rapa HOM05D007597 ORTHO05D009608 7.3e-07 57.8 46 69.6
Gohir.D04G186400 Gossypium hirsutum HOM05D007597 ORTHO05D009608 7.3e-07 57.8 43 72.1
QL03p036112 Quercus lobata HOM05D007597 ORTHO05D009608 7.3e-07 57.8 115 43.5
Thecc.02G293900 Theobroma cacao HOM05D007597 ORTHO05D009608 7.3e-07 57.8 120 52.5
ATR0118G012 Amborella trichopoda HOM05D007597 ORTHO05D009608 9.5e-07 57.4 45 66.7
MSTRG.13629 Avicennia marina HOM05D007597 ORTHO05D009608 9.5e-07 57.4 131 40.5
Gohir.A04G143100 Gossypium hirsutum HOM05D007597 ORTHO05D009608 9.5e-07 57.4 107 48.6
SalBow2G2924 Salvia bowleyana HOM05D007597 ORTHO05D009608 9.5e-07 57.4 107 42.1
Ciclev10016899m.g Citrus clementina HOM05D007597 ORTHO05D009608 1.2e-06 57.0 46 60.9
BcaC06g34122 Brassica carinata HOM05D007597 ORTHO05D009608 1.6e-06 56.6 100 42.0
BolC7t43776H Brassica oleracea HOM05D007597 ORTHO05D009608 1.6e-06 56.6 100 42.0
Migut.E00488 Erythranthe guttata HOM05D007597 ORTHO05D009608 1.6e-06 56.6 52 53.8
PGR142G2235 Punica granatum HOM05D007597 ORTHO05D009608 1.6e-06 56.6 41 70.7
C07p32430 Brassica napus HOM05D007597 ORTHO05D009608 2.1e-06 56.2 101 41.6
BcaC06g31279 Brassica carinata HOM05D007597 ORTHO05D009608 3.6e-06 55.5 47 68.1
Gorai.012G182800 Gossypium raimondii HOM05D007597 ORTHO05D009608 3.6e-06 55.5 110 48.2
FAN17G0527 Fragaria x ananassa HOM05D007597 ORTHO05D009608 4.7e-06 55.1 42 69.0
Cpa.g.sc2.188 Carica papaya HOM05D007597 ORTHO05D009608 8.1e-06 54.3 46 65.2
Glyma.02G085800 Glycine max HOM05D007597 ORTHO05D009608 8.1e-06 54.3 98 38.8
Manes.17G084450 Manihot esculenta HOM05D007597 ORTHO05D000073 8.1e-06 54.3 39 66.7


User provided reference genes

Program Settings