Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.5e-113 412.9 219 100.0
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.3e-98 362.5 219 90.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 6.0e-70 268.1 226 70.8
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.6e-54 215.3 229 57.2
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.4e-50 203.0 233 54.9
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 2.6e-49 199.5 233 54.1
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.2e-48 196.4 233 54.5
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.0e-36 156.8 222 53.2
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 3.7e-35 152.5 226 52.2
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 7.7e-33 144.8 222 50.5
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.0e-32 144.4 232 47.4
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 4.8e-27 125.6 233 45.1
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 4.5e-25 119.0 227 41.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 5.9e-25 118.6 221 42.1
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 8.5e-24 114.8 227 42.3
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.1e-23 114.4 224 41.1
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 3.2e-23 112.8 212 41.0
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 5.2e-21 105.5 230 41.7
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 6.8e-21 105.1 196 38.8
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 9.8e-20 101.3 199 39.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 4.8e-19 99.0 217 40.1
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 6.3e-19 98.6 203 38.9
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 6.3e-19 98.6 210 42.4
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.4e-18 96.7 210 35.7
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.4e-18 96.7 217 36.4
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 7.0e-18 95.1 210 38.6
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 9.1e-18 94.7 196 38.3
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 9.1e-18 94.7 225 36.0
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-17 94.4 221 38.5
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.2e-17 94.4 217 36.4
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 3.5e-17 92.8 81 67.9
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 7.7e-17 91.7 222 34.7
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.0e-16 91.3 227 37.0
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.7e-16 90.5 229 36.7
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.2e-16 90.1 216 34.3
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.1e-15 87.8 216 36.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.5e-15 87.4 103 46.6
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.2e-15 86.3 209 35.4
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.2e-15 86.3 199 37.7
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-14 84.3 208 34.6
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-14 84.0 207 36.2
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.1e-14 83.6 209 34.9
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 8.0e-14 81.6 206 36.9
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 8.0e-14 81.6 202 36.1
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 1.4e-13 80.9 164 36.6
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 4.0e-13 79.3 197 37.1
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 5.2e-13 79.0 181 34.3
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.2e-12 77.8 214 33.6
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 2.0e-12 77.0 205 33.7
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 2.6e-12 76.6 203 36.0
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 4.4e-12 75.9 154 40.9
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 5.7e-12 75.5 103 41.7
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.3e-11 74.3 242 32.6
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 1.3e-11 74.3 198 34.8
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 2.8e-11 73.2 206 35.4
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 3.7e-11 72.8 202 37.1
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.7e-11 72.8 90 44.4
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 4.9e-11 72.4 213 34.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 6.3e-11 72.0 205 36.1
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 8.3e-11 71.6 202 37.1
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.1e-10 71.2 191 38.2
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.1e-10 71.2 209 35.9
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.4e-10 70.9 191 36.6
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.4e-10 70.9 217 35.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.8e-10 70.5 231 35.1
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.8e-10 70.5 202 37.6
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.8e-10 70.5 90 48.9
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 2.4e-10 70.1 206 35.9
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 2.4e-10 70.1 216 35.6
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 3.1e-10 69.7 193 36.8
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.1e-10 69.3 219 32.9
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 4.1e-10 69.3 225 32.4
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.1e-10 69.3 198 32.3
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 5.4e-10 68.9 109 45.0
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 7.0e-10 68.6 218 33.5
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 7.0e-10 68.6 206 35.0
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 9.2e-10 68.2 166 34.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 9.2e-10 68.2 213 32.9
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.2e-09 67.8 205 33.7
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.6e-09 67.4 206 30.6
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.0e-09 67.0 207 31.9
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 2.0e-09 67.0 215 31.2
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.0e-09 67.0 207 33.8
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.0e-09 67.0 214 32.7
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 3.5e-09 66.2 97 50.5
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 5.9e-09 65.5 201 33.3
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 5.9e-09 65.5 234 35.0
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.9e-09 65.5 75 57.3
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.9e-09 65.5 206 30.6
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 5.9e-09 65.5 206 30.6
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 7.8e-09 65.1 71 46.5
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 7.8e-09 65.1 158 34.2
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.0e-08 64.7 219 31.5
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 1.3e-08 64.3 128 39.8
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.3e-08 64.3 231 32.0
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.3e-08 64.3 113 43.4
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.7e-08 63.9 82 45.1
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.7e-08 63.9 206 35.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 2.3e-08 63.5 224 33.0
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.9e-08 63.2 234 35.5
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.9e-08 63.2 201 28.9
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.9e-08 63.2 170 35.9
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.8e-08 62.8 204 32.4
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 3.8e-08 62.8 199 31.2
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.0e-08 62.4 204 32.4
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 6.6e-08 62.0 106 33.0
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.6e-08 62.0 187 32.6
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 8.6e-08 61.6 216 34.7
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 8.6e-08 61.6 168 35.7
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 8.6e-08 61.6 181 33.1
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.1e-07 61.2 218 30.7
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.1e-07 61.2 142 35.2
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 1.1e-07 61.2 85 43.5
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.5e-07 60.8 71 46.5
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.9e-07 60.5 125 38.4
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.3e-07 59.3 82 42.7
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 4.3e-07 59.3 216 31.9
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 4.3e-07 59.3 182 31.9
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 5.6e-07 58.9 183 36.6
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 5.6e-07 58.9 174 33.9
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 7.3e-07 58.5 164 28.0
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 7.3e-07 58.5 226 31.9
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 7.3e-07 58.5 226 31.9
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 7.3e-07 58.5 224 32.6
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 7.3e-07 58.5 177 31.1
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 9.5e-07 58.2 73 47.9
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 9.5e-07 58.2 73 47.9
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 9.5e-07 58.2 79 44.3
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 1.2e-06 57.8 59 52.5
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.6e-06 57.4 180 32.8
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.6e-06 57.4 43 62.8
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 1.6e-06 57.4 170 30.0
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 6.1e-06 55.5 50 56.0
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.1e-06 55.5 65 44.6
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 8.0e-06 55.1 38 65.8


User provided reference genes

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