Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 6.3e-166 587.4 305 100.0
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.0e-163 580.1 305 98.0
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 7.9e-145 517.3 300 90.0
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.1e-143 513.5 300 89.3
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.3e-143 511.9 300 88.3
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.7e-142 509.6 294 90.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 6.3e-126 454.5 298 76.5
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 3.8e-123 445.3 310 74.2
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.5e-122 443.4 310 72.6
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.5e-122 443.4 301 75.4
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.9e-122 443.0 298 73.8
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-121 440.3 301 75.7
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.7e-121 439.1 296 74.3
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.1e-121 438.0 301 74.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-120 437.2 315 72.4
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 6.8e-120 434.5 301 74.1
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.5e-119 433.3 298 75.5
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.0e-119 433.0 295 73.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.7e-119 431.4 298 73.8
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 7.5e-119 431.0 314 72.9
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.3e-118 430.3 298 74.5
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.3e-118 430.3 302 71.5
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.3e-118 430.3 301 72.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.3e-118 430.3 301 71.4
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.7e-118 429.9 295 72.9
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.2e-118 429.5 298 73.5
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 3.7e-118 428.7 295 72.9
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.3e-118 427.9 295 72.2
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.1e-117 427.2 265 78.5
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 7.0e-117 424.5 312 71.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.6e-116 423.3 301 70.8
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.6e-116 423.3 300 71.7
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.0e-115 420.6 298 71.8
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.3e-115 419.5 301 69.8
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.0e-115 418.3 301 69.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 6.6e-115 417.9 313 68.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 6.6e-115 417.9 290 73.8
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 8.6e-115 417.5 298 70.1
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.6e-115 417.5 301 69.8
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.9e-114 416.4 297 71.4
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.5e-114 416.0 301 69.4
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.5e-114 416.0 301 69.8
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 2.5e-114 416.0 298 70.5
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.3e-114 415.6 302 72.2
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.3e-114 415.2 301 69.4
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 4.3e-114 415.2 301 69.4
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.3e-114 415.2 301 68.1
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.2e-113 413.7 294 71.8
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.1e-113 412.9 295 71.9
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 8.0e-113 411.0 298 70.1
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 8.0e-113 411.0 302 70.5
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.8e-112 409.8 301 68.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.2e-112 408.3 333 65.5
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 6.8e-112 407.9 304 69.4
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.2e-111 407.1 299 69.9
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.5e-111 406.8 306 69.0
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 3.4e-111 405.6 301 69.1
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 7.5e-111 404.4 335 64.2
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 7.5e-111 404.4 298 69.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.8e-111 404.1 312 66.7
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.3e-110 403.7 306 69.6
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.2e-110 402.9 298 69.1
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.7e-110 402.1 298 69.1
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 8.3e-110 401.0 361 59.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 8.3e-110 401.0 309 68.6
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 8.3e-110 401.0 291 69.1
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.4e-109 400.2 306 68.3
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.4e-109 399.4 301 66.1
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.2e-109 399.1 301 69.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 5.4e-109 398.3 301 67.8
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.6e-108 396.7 302 69.2
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.6e-108 396.7 298 69.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.6e-108 396.7 294 68.4
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 4.6e-108 395.2 298 68.1
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 5.9e-108 394.8 296 69.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.3e-107 393.7 289 69.9
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.7e-107 393.3 290 67.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.3e-107 392.9 301 65.8
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 3.0e-107 392.5 299 66.2
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 5.0e-107 391.7 294 67.0
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 6.6e-107 391.3 301 65.1
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 8.6e-107 391.0 298 65.1
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.5e-106 390.2 296 65.5
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.5e-106 390.2 301 65.4
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.5e-106 390.2 310 64.8
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.9e-106 389.8 382 55.8
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.9e-106 389.8 301 67.1
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 4.3e-106 388.7 301 64.8
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 5.6e-106 388.3 301 64.8
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 5.6e-106 388.3 301 64.5
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 9.5e-106 387.5 307 63.8
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.2e-105 387.1 298 64.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 1.2e-105 387.1 294 66.0
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.6e-105 386.7 301 64.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 3.6e-105 385.6 296 64.9
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 8.0e-105 384.4 308 64.9
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 8.0e-105 384.4 295 65.1
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.4e-104 383.6 324 63.6
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 2.3e-104 382.9 286 66.1
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 2.3e-104 382.9 294 67.0
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 3.1e-104 382.5 294 67.0
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 6.8e-104 381.3 288 68.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 6.8e-104 381.3 306 63.4
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.5e-103 380.2 304 64.8
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.5e-103 380.2 304 64.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 4.4e-103 378.6 289 67.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 4.4e-103 378.6 295 65.8
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 5.8e-103 378.3 270 69.3
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 7.5e-103 377.9 300 65.7
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 9.8e-103 377.5 315 63.2
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 9.8e-103 377.5 339 60.8
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.7e-102 375.6 257 75.5
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.1e-101 374.0 303 64.7
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-101 374.0 278 69.4
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 4.1e-101 372.1 315 62.9
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-100 370.5 303 64.7
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 2.7e-100 369.4 304 60.9
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.0e-100 368.2 270 67.4
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.3e-99 367.1 257 71.6
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.3e-99 366.3 304 64.1
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 6.6e-99 364.8 275 68.0
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.1e-98 364.0 299 63.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 7.5e-95 351.3 311 60.8
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 9.8e-95 350.9 280 64.3
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.0e-92 341.7 297 59.9
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 7.8e-92 341.3 215 80.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.3e-91 340.5 288 62.8
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.3e-91 339.7 293 61.1
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 8.6e-83 311.2 281 56.6
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 3.4e-79 299.3 308 51.9
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 4.4e-79 298.9 301 52.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.9e-78 296.2 225 69.3
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 4.2e-77 292.4 285 55.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 9.3e-77 291.2 304 55.9
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.6e-76 290.4 295 54.6
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 7.8e-76 288.1 297 52.2
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.0e-75 287.7 251 60.2
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 2.5e-74 283.1 263 55.5
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.4e-72 277.3 273 54.9
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.2e-71 274.2 281 50.5
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 3.8e-70 269.2 278 49.3
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 6.4e-70 268.5 278 48.9
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 3.9e-67 259.2 148 79.7
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 8.7e-67 258.1 218 61.5
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 7.4e-66 255.0 199 65.3
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 4.6e-60 235.7 193 63.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 5.1e-59 232.3 317 47.0
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.7e-59 231.9 240 50.8
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.7e-59 231.5 185 63.8
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.0e-56 222.6 203 57.6
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 4.0e-56 222.6 180 60.0
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 4.2e-53 212.6 197 53.8
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 9.3e-53 211.5 147 71.4
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.5e-52 209.5 144 70.1
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 3.0e-51 206.5 217 50.2
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 3.7e-41 172.9 279 38.0
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 3.2e-29 133.3 278 33.1
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.5e-21 107.8 325 27.7
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 9.4e-21 105.1 105 58.1
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 2.7e-20 103.6 213 30.5
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 2.0e-18 97.4 119 47.9
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.1e-16 91.7 319 28.2
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.4e-16 91.3 114 44.7
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-14 85.1 76 64.5
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 4.7e-12 76.3 267 27.3
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.7e-09 67.8 179 33.5
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.8e-09 67.0 62 45.2
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-08 64.7 40 72.5


User provided reference genes

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