Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000231g0460 Nicotiana tabacum HOM05D003037 ORTHO05D284627 4.5e-222 774.2 383 100.0
arahy.Tifrunner.gnm1.ann1.3Q8GGF Arachis hypogaea HOM05D003037 ORTHO05D003659 1.1e-07 62.0 65 49.2
arahy.Tifrunner.gnm1.ann1.Y8ZHMJ Arachis hypogaea HOM05D003037 ORTHO05D003659 1.1e-07 62.0 65 49.2
FAN03G1983 Fragaria x ananassa HOM05D003037 ORTHO05D003659 2.0e-07 61.2 73 50.7
Lsat_1_v5_gn_7_75321 Lactuca sativa HOM05D003037 ORTHO05D003659 2.0e-07 61.2 40 67.5
Nitab4.5_0000948g0100 Nicotiana tabacum HOM05D003037 ORTHO05D003659 2.0e-07 61.2 37 78.4
Oeu045935.1 Olea europaea HOM05D003037 ORTHO05D003659 2.0e-07 61.2 37 78.4
CSS0012029 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 2.6e-07 60.8 40 72.5
CSS0041282 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 2.6e-07 60.8 40 72.5
Ca_00048_v3 Cicer arietinum L. HOM05D003037 ORTHO05D003659 2.6e-07 60.8 37 78.4
Actinidia00185 Actinidia chinensis HOM05D003037 ORTHO05D003659 3.3e-07 60.5 37 75.7
Dinv19397 Davidia involucrata HOM05D003037 ORTHO05D003659 3.3e-07 60.5 37 75.7
ECA236G0695 Erigeron canadensis HOM05D003037 ORTHO05D003659 3.3e-07 60.5 47 61.7
ECA240G1415 Erigeron canadensis HOM05D003037 ORTHO05D003659 3.3e-07 60.5 37 75.7
Hma1.2p1_1108F.1_g257915 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 3.3e-07 60.5 37 75.7
Hma1.2p1_1108F.1_g257920 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 3.3e-07 60.5 37 75.7
SalBow3G2424 Salvia bowleyana HOM05D003037 ORTHO05D003659 3.3e-07 60.5 37 75.7
SGA_v2.0_scaffold8G04432 Striga asiatica HOM05D003037 ORTHO05D003659 3.3e-07 60.5 37 75.7
MSTRG.16497 Avicennia marina HOM05D003037 ORTHO05D003659 4.4e-07 60.1 43 69.8
CAN.G798.49 Capsicum annuum HOM05D003037 ORTHO05D003659 4.4e-07 60.1 35 80.0
DCAR_025355 Daucus carota HOM05D003037 ORTHO05D003659 4.4e-07 60.1 37 73.0
Peaxi162Scf00011g00092 Petunia axillaris HOM05D003037 ORTHO05D003659 4.4e-07 60.1 35 80.0
MSTRG.27854 Avicennia marina HOM05D003037 ORTHO05D003659 5.7e-07 59.7 37 75.7
CANSAT35G1041 Cannabis sativa HOM05D003037 ORTHO05D003659 5.7e-07 59.7 47 61.7
Medtr2g006040 Medicago truncatula HOM05D003037 ORTHO05D003659 5.7e-07 59.7 60 53.3
Ciclev10004097m.g Citrus clementina HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
COL.COLO4_17755 Corchorus olitorius HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
Gohir.A12G043400 Gossypium hirsutum HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
Gohir.D12G042900 Gossypium hirsutum HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
Gorai.008G044900 Gossypium raimondii HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
HanXRQChr03g0065191 Helianthus annuus HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
Lsat_1_v5_gn_9_120700 Lactuca sativa HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
Lsat_1_v5_gn_9_120721 Lactuca sativa HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
Lalb_Chr25g0278781 Lupinus albus HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 75.7
SGA_v2.0_scaffold272G46366 Striga asiatica HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
VMungo0540G1935 Vigna mungo HOM05D003037 ORTHO05D003659 7.4e-07 59.3 37 73.0
Ah.03g137100 Amaranthus hybridus HOM05D003037 ORTHO05D003659 9.7e-07 58.9 71 47.9
EL10Ac6g14061 Beta vulgaris HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
Dinv07473 Davidia involucrata HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
FvH4_7g02550 Fragaria vesca HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
FAN01G1632 Fragaria x ananassa HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
FAN06G4382 Fragaria x ananassa HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
FAN10G2304 Fragaria x ananassa HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
HanXRQChr07g0187481 Helianthus annuus HOM05D003037 ORTHO05D003659 9.7e-07 58.9 47 61.7
Hma1.2p1_0427F.1_g150700 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
Medtr4g130680 Medicago truncatula HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 75.7
RcHm_v2.0_Chr1g0321201 Rosa chinensis HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
RcHm_v2.0_Chr1g0321271 Rosa chinensis HOM05D003037 ORTHO05D003659 9.7e-07 58.9 37 73.0
Sabra04G0125800 Salix brachista HOM05D003300 ORTHO05D003731 9.7e-07 58.9 90 41.1
TAR381G0039 Trochodendron aralioides HOM05D003037 ORTHO05D003659 1.3e-06 58.5 37 75.7
Duzib248G0822 Durio zibethinus HOM05D003037 ORTHO05D003659 1.7e-06 58.2 37 70.3
Gohir.A04G130600 Gossypium hirsutum HOM05D003037 ORTHO05D003659 1.7e-06 58.2 37 70.3
Gohir.D04G175800 Gossypium hirsutum HOM05D003037 ORTHO05D003659 1.7e-06 58.2 37 70.3
Gorai.012G167100 Gossypium raimondii HOM05D003037 ORTHO05D003659 1.7e-06 58.2 37 70.3
MBI05_g00183_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 1.7e-06 58.2 37 75.7
GSVIVG01023275001 Vitis vinifera HOM05D003037 ORTHO05D003659 1.7e-06 58.2 37 70.3
Ah.02g126950 Amaranthus hybridus HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 73.0
AUR62014220 Chenopodium quinoa HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 73.0
Duzib052G1010 Durio zibethinus HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 70.3
Glyma.19G177100 Glycine max HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 70.3
Manes.07G022900 Manihot esculenta HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 70.3
Nitab4.5_0002596g0060 Nicotiana tabacum HOM05D003037 ORTHO05D003659 2.2e-06 57.8 35 80.0
PGR042G0094 Punica granatum HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 70.3
QL02p100067 Quercus lobata HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 70.3
Sc16g0002460 Simmondsia chinensis HOM05D003037 ORTHO05D003659 2.2e-06 57.8 37 70.3
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.2e-06 57.8 63 47.6
HPP92_003892 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.2e-06 57.8 63 47.6
Atru.chr6.760 Acer truncatum HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 73.0
A03p66520 Brassica napus HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 70.3
BraA03t15703Z Brassica rapa HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 70.3
Cpa.g.sc30.45 Carica papaya HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 67.6
Cfa005476 Carpinus fangiana HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 70.3
Migut.N00833 Erythranthe guttata HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 70.3
Glyma.03G176400 Glycine max HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 70.3
Potri.004G222400 Populus trichocarpa HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 70.3
PGR142G1570 Punica granatum HOM05D003037 ORTHO05D003659 2.8e-06 57.4 35 74.3
Solyc01g103750.4 Solanum lycopersicum HOM05D003037 ORTHO05D003659 2.8e-06 57.4 35 77.1
Sopen01g046150 Solanum pennellii HOM05D003037 ORTHO05D003659 2.8e-06 57.4 35 77.1
PGSC0003DMG400024926 Solanum tuberosum HOM05D003037 ORTHO05D003659 2.8e-06 57.4 35 77.1
TAR624G0307 Trochodendron aralioides HOM05D003037 ORTHO05D003659 2.8e-06 57.4 37 73.0
CiPaw.05G051700 Carya illinoinensis HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 70.3
ClCG11G013340 Citrullus lanatus HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 70.3
MELO3C011826.2 Cucumis melo HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 70.3
CsaV3_5G029840 Cucumis sativus L. HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 70.3
Lj4g0001882 Lotus japonicus HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 73.0
Peaxi162Scf00002g02511 Petunia axillaris HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 70.3
Phvul.006G218100 Phaseolus vulgaris HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 70.3
Psat1g223400 Pisum sativum HOM05D003037 ORTHO05D003659 3.7e-06 57.0 37 67.6
Aa31LG2G11000 Aethionema arabicum HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
AL2G17980 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
AT1G58080 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
BcaC02g10704 Brassica carinata HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
BcaC04g22114 Brassica carinata HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
BcaC06g31782 Brassica carinata HOM05D003037 ORTHO05D005835 4.8e-06 56.6 37 70.3
A09p18570 Brassica napus HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
C04p26910 Brassica napus HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
C09p23190 Brassica napus HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
BolC4t24107H Brassica oleracea HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
BolC9t55238H Brassica oleracea HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
BraA09t37483Z Brassica rapa HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
Carub.0002s0655 Capsella rubella HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
Thhalv10023501m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
Nn4g24648 Nelumbo nucifera HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 67.6
Nitab4.5_0004070g0020 Nicotiana tabacum HOM05D003300 ORTHO05D003731 4.8e-06 56.6 62 48.4
Nitab4.5_0006089g0020 Nicotiana tabacum HOM05D003300 ORTHO05D003731 4.8e-06 56.6 62 45.2
Oeu000128.2 Olea europaea HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 73.0
QL02p100153 Quercus lobata HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
Sp2g05490 Schrenkiella parvula HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
Sed0009851 Sechium edule HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
Thecc.02G025100 Theobroma cacao HOM05D003037 ORTHO05D003659 4.8e-06 56.6 37 70.3
EL10Ac7g16182 Beta vulgaris HOM05D003300 ORTHO05D003731 6.3e-06 56.2 110 36.4
CSS0026106 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 6.3e-06 56.2 70 45.7
CARHR053980 Cardamine hirsuta HOM05D003037 ORTHO05D003659 6.3e-06 56.2 37 67.6
Eucgr.G00351 Eucalyptus grandis HOM05D003037 ORTHO05D003659 6.3e-06 56.2 37 64.9
MD05G1010900 Malus domestica HOM05D003037 ORTHO05D003659 6.3e-06 56.2 37 67.6
Potri.019G057200 Populus trichocarpa HOM05D003037 ORTHO05D003659 6.3e-06 56.2 37 67.6
RcHm_v2.0_Chr1g0321241 Rosa chinensis HOM05D003037 ORTHO05D003659 6.3e-06 56.2 37 70.3
Sabra01G0168500 Salix brachista HOM05D003037 ORTHO05D003659 6.3e-06 56.2 37 67.6
Sed0025195 Sechium edule HOM05D003037 ORTHO05D003659 6.3e-06 56.2 34 76.5
unitig_747.g21264 Utricularia gibba HOM05D003037 ORTHO05D003659 6.3e-06 56.2 37 73.0
A01p28170 Brassica napus HOM05D003037 ORTHO05D003659 8.2e-06 55.8 35 74.3
BraA01t02947Z Brassica rapa HOM05D003037 ORTHO05D003659 8.2e-06 55.8 35 74.3
CSS0001224 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 8.2e-06 55.8 35 77.1
CSS0046523 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 8.2e-06 55.8 35 77.1
Cc02_g22990 Coffea canephora HOM05D003037 ORTHO05D003659 8.2e-06 55.8 37 70.3


User provided reference genes

Program Settings