Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.1e-42 175.3 88 100.0
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 4.0e-41 171.0 88 96.6
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 9.9e-40 166.4 86 95.3
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 3.2e-38 161.4 86 90.7
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 7.1e-38 160.2 86 89.5
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.3e-38 159.8 86 89.5
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.8e-36 155.6 84 95.2
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 1.3e-34 149.4 88 81.8
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.1e-34 148.7 88 80.7
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.1e-34 148.7 86 80.2
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 3.7e-34 147.9 88 80.7
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 4.8e-34 147.5 88 80.7
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 4.8e-34 147.5 88 79.5
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.4e-33 146.0 88 78.4
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.4e-33 146.0 88 78.4
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.8e-33 145.6 86 77.9
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 2.4e-33 145.2 88 77.3
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 4.0e-33 144.4 88 77.3
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 4.0e-33 144.4 88 79.5
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 6.9e-33 143.7 88 78.4
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 9.0e-33 143.3 85 80.0
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.2e-32 142.9 88 78.4
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.2e-32 142.9 86 76.7
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 2.6e-32 141.7 86 77.9
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.6e-32 141.7 88 77.3
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 2.6e-32 141.7 88 75.0
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 3.4e-32 141.4 88 76.1
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 4.5e-32 141.0 88 76.1
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 5.8e-32 140.6 88 75.0
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 7.6e-32 140.2 88 75.0
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 7.6e-32 140.2 88 75.0
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.3e-31 139.4 88 75.0
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.3e-31 139.4 88 73.9
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 2.2e-31 138.7 86 73.3
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 2.2e-31 138.7 86 74.4
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 2.9e-31 138.3 88 75.0
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 2.9e-31 138.3 88 75.0
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 2.9e-31 138.3 88 73.9
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 2.9e-31 138.3 88 76.1
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 2.9e-31 138.3 88 72.7
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 2.9e-31 138.3 85 76.5
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 2.9e-31 138.3 86 74.4
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.9e-31 138.3 86 73.3
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 2.9e-31 138.3 86 73.3
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 2.9e-31 138.3 86 73.3
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 2.9e-31 138.3 88 75.0
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.8e-31 137.9 86 74.4
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 3.8e-31 137.9 88 73.9
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 4.9e-31 137.5 88 72.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 4.9e-31 137.5 88 75.0
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 4.9e-31 137.5 88 73.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 8.4e-31 136.7 85 77.6
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 8.4e-31 136.7 88 73.9
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 8.4e-31 136.7 88 73.9
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.1e-30 136.3 86 70.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.4e-30 136.0 86 73.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.9e-30 135.6 88 71.6
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 2.5e-30 135.2 86 72.1
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.5e-30 135.2 86 70.9
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 3.2e-30 134.8 98 68.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 3.2e-30 134.8 88 71.6
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 4.2e-30 134.4 88 72.7
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 4.2e-30 134.4 86 70.9
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 5.5e-30 134.0 86 77.9
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 7.1e-30 133.7 88 71.6
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 7.1e-30 133.7 88 71.6
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 7.1e-30 133.7 88 69.3
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 9.3e-30 133.3 88 70.5
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 9.3e-30 133.3 86 70.9
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 1.2e-29 132.9 86 70.9
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.6e-29 132.5 88 69.3
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 2.1e-29 132.1 93 71.0
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.1e-29 132.1 93 71.0
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 6.0e-29 130.6 86 68.6
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 7.9e-29 130.2 88 69.3
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.3e-28 129.4 86 70.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.3e-28 129.4 86 67.4
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-28 129.0 101 65.3
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.8e-28 129.0 88 64.8
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 3.0e-28 128.3 94 68.1
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 3.0e-28 128.3 88 67.0
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 3.9e-28 127.9 86 74.4
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.1e-28 127.5 93 66.7
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 6.7e-28 127.1 100 65.0
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 6.7e-28 127.1 127 53.5
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 6.7e-28 127.1 86 74.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 8.7e-28 126.7 94 67.0
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 8.7e-28 126.7 88 68.2
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 8.7e-28 126.7 86 66.3
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.1e-27 126.3 86 65.1
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 1.5e-27 125.9 99 62.6
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 1.9e-27 125.6 100 64.0
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 4.3e-27 124.4 101 62.4
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 4.3e-27 124.4 101 62.4
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 4.3e-27 124.4 111 57.7
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 4.3e-27 124.4 111 57.7
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 7.4e-27 123.6 70 84.3
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 7.4e-27 123.6 88 64.8
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.3e-26 122.9 86 67.4
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.6e-26 122.5 100 60.0
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.8e-26 121.7 88 67.0
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 3.7e-26 121.3 87 65.5
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 9.0e-25 116.7 88 64.8
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.5e-24 115.9 86 59.3
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.6e-24 115.2 122 50.8
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 3.4e-24 114.8 86 60.5
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 2.9e-23 111.7 69 75.4
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 4.9e-23 110.9 70 74.3
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.9e-22 109.0 143 44.1
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 2.5e-22 108.6 78 67.9
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 3.2e-22 108.2 80 58.8
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.6e-21 105.9 80 56.2
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.1e-21 105.5 70 68.6
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 2.7e-21 105.1 88 63.6
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.8e-20 102.4 64 78.1
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.5e-19 99.4 86 60.5
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 1.5e-19 99.4 86 60.5
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-18 96.3 82 62.2
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.3e-18 96.3 86 57.0
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.6e-18 95.9 88 56.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 2.2e-18 95.5 101 51.5
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.1e-17 93.2 86 55.8
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 4.1e-17 91.3 93 53.8
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.7e-16 87.0 79 55.7
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.8e-12 75.9 60 60.0
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 6.7e-12 73.9 62 50.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 4.3e-11 71.2 51 62.7
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 2.2e-10 68.9 49 67.3
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-06 56.6 58 53.4


User provided reference genes

Program Settings