Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000227g0300 Nicotiana tabacum HOM05D000071 ORTHO05D000029 8.0e-45 183.3 90 100.0
Nitab4.5_0002786g0080 Nicotiana tabacum HOM05D000071 ORTHO05D000029 4.4e-27 124.4 85 72.9
Nitab4.5_0004261g0020 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.7e-26 122.5 85 74.1
Nitab4.5_0000023g0660 Nicotiana tabacum HOM05D000071 ORTHO05D000029 8.3e-26 120.2 77 77.9
Nitab4.5_0000227g0310 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.6e-21 105.9 52 88.5
Nitab4.5_0010781g0010 Nicotiana tabacum HOM05D000071 ORTHO05D000029 4.7e-21 104.4 52 86.5
Nitab4.5_0000023g0450 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.1e-20 103.2 51 88.2
Nitab4.5_0002914g0140 Nicotiana tabacum HOM05D000071 ORTHO05D000029 3.4e-19 98.2 52 80.8
Nitab4.5_0002914g0150 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.7e-18 95.9 52 78.8
Nitab4.5_0000227g0320 Nicotiana tabacum HOM05D000071 ORTHO05D000029 2.2e-18 95.5 54 79.6
Nitab4.5_0004261g0030 Nicotiana tabacum HOM05D000071 ORTHO05D000029 2.9e-18 95.1 52 78.8
Nitab4.5_0013750g0020 Nicotiana tabacum HOM05D000071 ORTHO05D000029 4.9e-18 94.4 52 78.8
Nitab4.5_0009002g0020 Nicotiana tabacum HOM05D000071 ORTHO05D000029 3.2e-17 91.7 50 84.0
Peaxi162Scf01090g10011 Petunia axillaris HOM05D000071 ORTHO05D000029 1.3e-15 86.3 56 66.1
PGSC0003DMG400014736 Solanum tuberosum HOM05D000071 ORTHO05D000029 2.3e-15 85.5 52 71.2
PGSC0003DMG400014739 Solanum tuberosum HOM05D000071 ORTHO05D000029 2.3e-15 85.5 56 66.1
PGSC0003DMG400019072 Solanum tuberosum HOM05D000071 ORTHO05D000029 2.3e-15 85.5 52 71.2
PGSC0003DMG400014742 Solanum tuberosum HOM05D000071 ORTHO05D000029 8.7e-15 83.6 52 69.2
PGSC0003DMG400014740 Solanum tuberosum HOM05D000071 ORTHO05D000029 1.1e-14 83.2 52 67.3
Peaxi162Scf01090g00004 Petunia axillaris HOM05D000071 ORTHO05D000029 1.9e-14 82.4 56 62.5
Nitab4.5_0000023g0530 Nicotiana tabacum HOM05D000071 ORTHO05D000029 4.3e-14 81.3 52 71.2
PGSC0003DMG400014753 Solanum tuberosum HOM05D000071 ORTHO05D000029 4.3e-14 81.3 52 65.4
Nitab4.5_0011718g0020 Nicotiana tabacum HOM05D000071 ORTHO05D000029 3.6e-13 78.2 43 81.4
PGSC0003DMG400014738 Solanum tuberosum HOM05D000071 ORTHO05D000029 4.7e-13 77.8 52 65.4
PGSC0003DMG400006422 Solanum tuberosum HOM05D000071 ORTHO05D000029 6.9e-12 73.9 52 59.6
Nitab4.5_0002786g0100 Nicotiana tabacum HOM05D000071 ORTHO05D000029 4.9e-10 67.8 37 75.7
Nitab4.5_0000443g0080 Nicotiana tabacum HOM05D000071 ORTHO05D000029 8.4e-10 67.0 55 56.4
Nitab4.5_0006246g0010 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.4e-09 66.2 55 52.7
Peaxi162Scf00199g00052 Petunia axillaris HOM05D000071 ORTHO05D000029 1.4e-09 66.2 53 50.9
CAN.G149.3 Capsicum annuum HOM05D000071 ORTHO05D000029 7.1e-09 63.9 54 51.9
Dinv32122 Davidia involucrata HOM05D000071 ORTHO05D000029 7.1e-09 63.9 53 52.8
CSS0031280 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.6e-08 62.8 55 52.7
PGSC0003DMG400010447 Solanum tuberosum HOM05D000071 ORTHO05D000029 4.6e-08 61.2 52 50.0
VMungo0464G1728 Vigna mungo HOM05D000071 ORTHO05D000029 1.0e-07 60.1 50 48.0
VMungo0464G1798 Vigna mungo HOM05D000071 ORTHO05D000029 1.0e-07 60.1 50 48.0
Rhsim10G0009500 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.0e-07 58.5 55 50.9
Atru.chr2.3395 Acer truncatum HOM05D000071 ORTHO05D000029 3.9e-07 58.2 55 50.9
Dinv08554 Davidia involucrata HOM05D000071 ORTHO05D000029 6.6e-07 57.4 52 50.0
Rhsim02G0186000 Rhododendron simsii HOM05D000071 ORTHO05D000029 6.6e-07 57.4 55 50.9
Rhsim10G0009100 Rhododendron simsii HOM05D000071 ORTHO05D000029 6.6e-07 57.4 55 50.9
Ciclev10007379m.g Citrus clementina HOM05D000071 ORTHO05D000029 8.7e-07 57.0 55 45.5
Ciclev10010776m.g Citrus clementina HOM05D000071 ORTHO05D000029 8.7e-07 57.0 55 45.5
Dinv08556 Davidia involucrata HOM05D000071 ORTHO05D000029 8.7e-07 57.0 53 50.9
VMungo0464G1503 Vigna mungo HOM05D000071 ORTHO05D000029 8.7e-07 57.0 50 46.0
Ciclev10010171m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.1e-06 56.6 55 45.5
Phvul.004G114800 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 1.1e-06 56.6 50 46.0
QL09p014501 Quercus lobata HOM05D000071 ORTHO05D000029 1.1e-06 56.6 53 47.2
RcHm_v2.0_Chr5g0082181 Rosa chinensis HOM05D001506 ORTHO05D000029 1.1e-06 56.6 54 42.6
RcHm_v2.0_Chr5g0082401 Rosa chinensis HOM05D001506 ORTHO05D000455 1.1e-06 56.6 54 42.6
VMungo0464G0826 Vigna mungo HOM05D000071 ORTHO05D000029 1.1e-06 56.6 50 46.0
COL.COLO4_09596 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.5e-06 56.2 53 52.8
COL.COLO4_37333 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.5e-06 56.2 56 50.0
Gorai.007G340300 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.5e-06 56.2 52 42.3
Medtr6g051800 Medicago truncatula HOM05D000071 ORTHO05D000029 1.5e-06 56.2 50 50.0
Gorai.007G339900 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.9e-06 55.8 52 44.2
QL09p048571 Quercus lobata HOM05D000071 ORTHO05D000029 1.9e-06 55.8 53 45.3
Sed0025272 Sechium edule HOM05D000071 ORTHO05D000029 1.9e-06 55.8 53 47.2
Sopen02g017680 Solanum pennellii HOM05D000071 ORTHO05D000029 1.9e-06 55.8 53 49.1
Gohir.A11G293482 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.5e-06 55.5 52 44.2
Dinv09261 Davidia involucrata HOM05D003254 ORTHO05D003713 3.3e-06 55.1 53 45.3
Dinv09282 Davidia involucrata HOM05D003254 ORTHO05D003713 3.3e-06 55.1 53 45.3
FAN03G0043 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.3e-06 55.1 52 44.2
GSVIVG01020945001 Vitis vinifera HOM05D000071 ORTHO05D000029 3.3e-06 55.1 50 42.0
Atru.chr2.3396 Acer truncatum HOM05D000071 ORTHO05D000029 4.3e-06 54.7 54 50.0
Ciclev10007334m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.3e-06 54.7 50 48.0
Duzib106G1501 Durio zibethinus HOM05D000071 ORTHO05D000029 4.3e-06 54.7 55 41.8
Gohir.D11G308466 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.3e-06 54.7 52 42.3
QL08p005572 Quercus lobata HOM05D000071 ORTHO05D000029 4.3e-06 54.7 51 47.1
QL09p052225 Quercus lobata HOM05D000071 ORTHO05D000029 4.3e-06 54.7 52 48.1
CSS0020490 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 5.6e-06 54.3 52 42.3
COL.COLO4_09603 Corchorus olitorius HOM05D000071 ORTHO05D000029 5.6e-06 54.3 53 50.9
Gorai.007G295800 Gossypium raimondii HOM05D000071 ORTHO05D000029 5.6e-06 54.3 54 48.1
RcHm_v2.0_Chr5g0082281 Rosa chinensis HOM05D001506 ORTHO05D000455 5.6e-06 54.3 54 40.7
Dinv07779 Davidia involucrata HOM05D000071 ORTHO05D000029 7.3e-06 53.9 52 42.3
Dinv07783 Davidia involucrata HOM05D000071 ORTHO05D000029 7.3e-06 53.9 52 40.4
Duzib068G0770 Durio zibethinus HOM05D000071 ORTHO05D000029 7.3e-06 53.9 52 48.1
Migut.N02331 Erythranthe guttata HOM05D000071 ORTHO05D000029 7.3e-06 53.9 49 40.8
FvH4_7g26565 Fragaria vesca HOM05D000071 ORTHO05D000029 7.3e-06 53.9 52 44.2
FAN06G1668 Fragaria x ananassa HOM05D000071 ORTHO05D000029 7.3e-06 53.9 52 44.2
Gorai.007G339100 Gossypium raimondii HOM05D000071 ORTHO05D000029 7.3e-06 53.9 52 40.4
MD05G1224700 Malus domestica HOM05D000071 ORTHO05D000029 7.3e-06 53.9 55 40.0
QL09p014150 Quercus lobata HOM05D000071 ORTHO05D000029 7.3e-06 53.9 58 48.3
RcHm_v2.0_Chr5g0082771 Rosa chinensis HOM05D000071 ORTHO05D000029 7.3e-06 53.9 54 40.7
GSVIVG01028967001 Vitis vinifera HOM05D000071 ORTHO05D000029 7.3e-06 53.9 50 42.0
arahy.Tifrunner.gnm1.ann1.R2JS4W Arachis hypogaea HOM05D000071 ORTHO05D000029 9.6e-06 53.5 53 41.5
COL.COLO4_09602 Corchorus olitorius HOM05D000071 ORTHO05D000029 9.6e-06 53.5 49 49.0
Duzib106G0613 Durio zibethinus HOM05D000071 ORTHO05D000029 9.6e-06 53.5 54 40.7
Duzib106G1551 Durio zibethinus HOM05D000071 ORTHO05D000029 9.6e-06 53.5 54 42.6
Gorai.007G338300 Gossypium raimondii HOM05D000071 ORTHO05D000029 9.6e-06 53.5 52 40.4
MD06G1026600 Malus domestica HOM05D000071 ORTHO05D000029 9.6e-06 53.5 53 45.3
Phvul.004G115600 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 9.6e-06 53.5 50 44.0
QL09p014118 Quercus lobata HOM05D000071 ORTHO05D000029 9.6e-06 53.5 58 48.3


User provided reference genes

Program Settings