Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.8e-60 235.7 119 100.0
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 5.5e-17 91.3 107 51.4
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 2.5e-14 82.4 51 74.5
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 5.7e-14 81.3 62 69.4
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 9.7e-14 80.5 62 67.7
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.7e-13 79.7 62 69.4
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 1.1e-12 77.0 60 66.7
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 6.9e-12 74.3 59 69.5
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 6.9e-12 74.3 54 68.5
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 9.1e-12 73.9 67 61.2
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 2.6e-11 72.4 53 69.8
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 2.6e-11 72.4 100 46.0
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 3.4e-11 72.0 68 58.8
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.7e-10 69.7 59 62.7
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 3.8e-10 68.6 62 66.1
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 8.5e-10 67.4 61 63.9
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 1.1e-09 67.0 53 69.8
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 1.4e-09 66.6 52 69.2
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 1.9e-09 66.2 63 57.1
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.9e-09 66.2 55 63.6
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 2.5e-09 65.9 55 63.6
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 4.2e-09 65.1 56 60.7
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 4.2e-09 65.1 59 59.3
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 7.2e-09 64.3 80 53.8
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 9.4e-09 63.9 58 56.9
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 9.4e-09 63.9 62 56.5
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 9.4e-09 63.9 55 60.0
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 1.2e-08 63.5 62 58.1
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.6e-08 63.2 61 55.7
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 2.1e-08 62.8 60 61.7
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 2.7e-08 62.4 58 51.7
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.7e-08 62.4 55 60.0
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 3.6e-08 62.0 58 60.3
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 3.6e-08 62.0 96 44.8
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 6.1e-08 61.2 61 54.1
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 6.1e-08 61.2 55 56.4
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 7.9e-08 60.8 67 52.2
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 1.0e-07 60.5 94 40.4
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 1.8e-07 59.7 77 48.1
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 1.8e-07 59.7 95 36.8
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.3e-07 59.3 103 36.9
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 2.3e-07 59.3 58 56.9
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 3.0e-07 58.9 59 49.2
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 3.0e-07 58.9 53 56.6
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 3.0e-07 58.9 104 39.4
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 3.0e-07 58.9 80 50.0
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 3.9e-07 58.5 67 47.8
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 3.9e-07 58.5 58 53.4
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 3.9e-07 58.5 64 48.4
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 6.7e-07 57.8 72 52.8
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 6.7e-07 57.8 54 55.6
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 6.7e-07 57.8 54 55.6
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 8.8e-07 57.4 52 55.8
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 1.1e-06 57.0 62 48.4
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 1.1e-06 57.0 62 53.2
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 1.1e-06 57.0 68 48.5
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 1.1e-06 57.0 79 48.1
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 1.5e-06 56.6 51 54.9
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 1.5e-06 56.6 71 45.1
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.5e-06 56.6 58 50.0
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.5e-06 56.6 65 47.7
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 1.5e-06 56.6 63 49.2
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 2.0e-06 56.2 62 48.4
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 2.0e-06 56.2 67 46.3
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 2.0e-06 56.2 52 55.8
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 2.0e-06 56.2 56 51.8
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 2.0e-06 56.2 59 52.5
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 2.6e-06 55.8 54 55.6
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 3.3e-06 55.5 51 52.9
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 3.3e-06 55.5 51 52.9
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 3.3e-06 55.5 51 52.9
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.3e-06 55.5 95 38.9
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.3e-06 55.5 95 38.9
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 3.3e-06 55.5 54 53.7
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 3.3e-06 55.5 95 38.9
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 3.3e-06 55.5 54 53.7
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 4.4e-06 55.1 98 36.7
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 5.7e-06 54.7 66 45.5
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 5.7e-06 54.7 51 52.9
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 7.4e-06 54.3 64 45.3
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 7.4e-06 54.3 51 51.0
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 7.4e-06 54.3 64 45.3
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 7.4e-06 54.3 79 36.7
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 7.4e-06 54.3 66 43.9
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 7.4e-06 54.3 83 42.2
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 9.7e-06 53.9 72 38.9
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 9.7e-06 53.9 75 41.3
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 9.7e-06 53.9 89 39.3
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 9.7e-06 53.9 55 50.9
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 9.7e-06 53.9 51 54.9


User provided reference genes

Program Settings