Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000219g0060 Nicotiana tabacum HOM05D007440 ORTHO05D009418 2.1e-123 445.7 221 100.0
Sopen12g008470 Solanum pennellii HOM05D007440 ORTHO05D009418 9.3e-111 403.7 220 89.1
Solyc12g017690.3 Solanum lycopersicum HOM05D007440 ORTHO05D009418 7.9e-110 400.6 220 88.6
Dinv41796 Davidia involucrata HOM05D007440 ORTHO05D009418 3.1e-90 335.5 220 76.4
Hma1.2p1_0708F.1_g207100 Hydrangea macrophylla HOM05D007440 ORTHO05D009418 1.2e-89 333.6 215 75.3
Actinidia29398 Actinidia chinensis HOM05D007440 ORTHO05D009418 2.0e-89 332.8 217 74.7
CSS0017361 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 3.4e-89 332.0 216 74.5
Manes.18G121350 Manihot esculenta HOM05D007440 ORTHO05D009418 4.5e-89 331.6 216 75.5
Nitab4.5_0006566g0010 Nicotiana tabacum HOM05D007440 ORTHO05D009418 4.5e-89 331.6 220 79.1
Ciclev10024582m.g Citrus clementina HOM05D007440 ORTHO05D009418 1.0e-88 330.5 211 77.3
PGSC0003DMG402002240 Solanum tuberosum HOM05D007440 ORTHO05D009418 1.0e-88 330.5 178 90.4
Cc03_g16220 Coffea canephora HOM05D007440 ORTHO05D009418 6.5e-88 327.8 215 74.9
Nn1g02997 Nelumbo nucifera HOM05D007440 ORTHO05D009418 3.2e-87 325.5 216 75.9
SalBow6G1672 Salvia bowleyana HOM05D007440 ORTHO05D009418 3.2e-87 325.5 215 75.8
GSVIVG01036437001 Vitis vinifera HOM05D007440 ORTHO05D009418 3.2e-87 325.5 218 76.1
RcHm_v2.0_Chr7g0230881 Rosa chinensis HOM05D007440 ORTHO05D009418 9.3e-87 323.9 215 75.3
Oeu061891.1 Olea europaea HOM05D007440 ORTHO05D009418 1.2e-86 323.6 219 75.8
FAN18G0056 Fragaria x ananassa HOM05D007440 ORTHO05D009418 1.6e-86 323.2 215 74.0
CiPaw.03G017000 Carya illinoinensis HOM05D007440 ORTHO05D009418 2.7e-86 322.4 215 74.4
Thecc.08G172800 Theobroma cacao HOM05D007440 ORTHO05D009418 2.7e-86 322.4 218 71.1
Cfa008111 Carpinus fangiana HOM05D007440 ORTHO05D009418 3.6e-86 322.0 215 74.9
Atru.chr12.1704 Acer truncatum HOM05D007440 ORTHO05D009418 7.9e-86 320.9 208 75.5
Cpa.g.sc21.56 Carica papaya HOM05D007440 ORTHO05D009418 1.0e-85 320.5 218 73.9
PGR031G3126 Punica granatum HOM05D007440 ORTHO05D009418 1.8e-85 319.7 215 73.0
TAR381G0685 Trochodendron aralioides HOM05D007440 ORTHO05D009418 3.0e-85 318.9 216 74.1
Lj9C701T14 Lonicera japonica HOM05D007440 ORTHO05D009418 6.7e-85 317.8 200 79.0
QL09p004054 Quercus lobata HOM05D007440 ORTHO05D009418 8.7e-85 317.4 216 73.1
RcHm_v2.0_Chr7g0224381 Rosa chinensis HOM05D007440 ORTHO05D009418 8.7e-85 317.4 215 74.4
Lsat_1_v5_gn_1_25281 Lactuca sativa HOM05D007440 ORTHO05D009418 9.7e-84 313.9 223 71.7
Migut.N03008 Erythranthe guttata HOM05D007440 ORTHO05D009418 2.8e-83 312.4 217 71.4
Aqoxy6G00075 Aquilegia oxysepala HOM05D007440 ORTHO05D009418 4.8e-83 311.6 214 72.0
Rhsim02G0174300 Rhododendron simsii HOM05D007440 ORTHO05D009418 4.8e-83 311.6 219 69.9
HanXRQChr02g0037061 Helianthus annuus HOM05D007440 ORTHO05D009418 8.2e-83 310.8 217 71.9
Potri.019G076200 Populus trichocarpa HOM05D007440 ORTHO05D009418 1.1e-82 310.5 216 72.2
Eucgr.H00023 Eucalyptus grandis HOM05D007440 ORTHO05D009418 3.1e-82 308.9 217 69.1
Gohir.D05G254100 Gossypium hirsutum HOM05D007440 ORTHO05D009418 9.0e-82 307.4 204 72.1
Gorai.009G265700 Gossypium raimondii HOM05D007440 ORTHO05D009418 9.0e-82 307.4 204 72.1
PSO170G3813 Papaver somniferum HOM05D007440 ORTHO05D009418 9.0e-82 307.4 216 70.4
Gohir.A05G252301 Gossypium hirsutum HOM05D007440 ORTHO05D009418 1.2e-81 307.0 204 71.1
ClCG11G008830 Citrullus lanatus HOM05D007440 ORTHO05D009418 2.6e-81 305.8 214 71.0
MELO3C008079.2 Cucumis melo HOM05D007440 ORTHO05D009418 2.6e-81 305.8 214 71.0
MD15G1399400 Malus domestica HOM05D007440 ORTHO05D009418 1.0e-80 303.9 215 72.1
TWI23G1187 Tripterygium wilfordii HOM05D007440 ORTHO05D009418 1.0e-80 303.9 214 72.4
Lalb_Chr17g0336871 Lupinus albus HOM05D007440 ORTHO05D009418 1.3e-80 303.5 217 68.7
CANSAT25G0816 Cannabis sativa HOM05D007440 ORTHO05D009418 1.7e-80 303.1 209 72.7
Ca_12759_v3 Cicer arietinum L. HOM05D007440 ORTHO05D009418 1.7e-80 303.1 210 70.5
CsaV3_2G033090 Cucumis sativus L. HOM05D007440 ORTHO05D009418 2.9e-80 302.4 214 70.1
arahy.Tifrunner.gnm1.ann1.E07HZ8 Arachis hypogaea HOM05D007440 ORTHO05D009418 3.8e-80 302.0 218 68.8
arahy.Tifrunner.gnm1.ann1.YQ4984 Arachis hypogaea HOM05D007440 ORTHO05D009418 5.0e-80 301.6 218 68.8
Hund26630 Selenicereus undatus HOM05D007440 ORTHO05D009418 5.0e-80 301.6 216 69.4
ECA247G2087 Erigeron canadensis HOM05D007440 ORTHO05D009418 1.4e-79 300.1 219 68.0
Sed0012539 Sechium edule HOM05D007440 ORTHO05D009418 1.9e-79 299.7 218 68.3
SGA_v2.0_scaffold19G08914 Striga asiatica HOM05D007440 ORTHO05D009418 1.9e-79 299.7 259 60.2
Sabra19G0086600 Salix brachista HOM05D007440 ORTHO05D009418 2.5e-79 299.3 227 68.7
Glyma.13G000800 Glycine max HOM05D007440 ORTHO05D009418 4.2e-79 298.5 210 70.0
FAN04G2515 Fragaria x ananassa HOM05D007440 ORTHO05D009418 7.2e-79 297.7 195 75.4
Lj3g0019924 Lotus japonicus HOM05D007440 ORTHO05D009418 7.2e-79 297.7 210 70.0
HPP92_004660 Vanilla planifolia HOM05D007440 ORTHO05D009418 1.2e-78 297.0 215 70.2
Peaxi162Scf00017g00002 Petunia axillaris HOM05D007440 ORTHO05D009418 1.6e-78 296.6 220 72.3
Psat7g227720 Pisum sativum HOM05D007440 ORTHO05D009418 4.6e-78 295.0 210 69.0
TPR.G34135 Trifolium pratense HOM05D007440 ORTHO05D009418 1.8e-77 293.1 210 68.1
ATR1089G110 Amborella trichopoda HOM05D007440 ORTHO05D009418 2.0e-76 289.7 214 66.8
Haze_13927 Corylus avellana HOM05D007440 ORTHO05D009418 2.6e-76 289.3 215 68.8
Phvul.011G216600 Phaseolus vulgaris HOM05D007440 ORTHO05D009418 4.3e-76 288.5 210 68.6
Medtr4g031180 Medicago truncatula HOM05D007440 ORTHO05D009418 1.7e-75 286.6 210 66.7
Aa31LG4G9050 Aethionema arabicum HOM05D007440 ORTHO05D009418 1.1e-74 283.9 218 63.8
FAN08G1847 Fragaria x ananassa HOM05D007440 ORTHO05D009418 2.4e-74 282.7 253 59.7
Os10g0141900 Oryza sativa ssp. japonica HOM05D007440 ORTHO05D009418 5.3e-74 281.6 212 63.7
THA.LOC104810378 Tarenaya hassleriana HOM05D007440 ORTHO05D009418 5.9e-73 278.1 204 65.2
CAN.G8.41 Capsicum annuum HOM05D007440 ORTHO05D009418 2.3e-69 266.2 219 65.3
CDE05G2917 Ceratophyllum demersum HOM05D007440 ORTHO05D009418 2.3e-69 266.2 209 64.1
FvH4_5g32910 Fragaria vesca HOM05D007440 ORTHO05D009418 5.2e-69 265.0 180 72.2
Prupe.1G546900 Prunus persica HOM05D007440 ORTHO05D009418 7.7e-65 251.1 174 71.8
vmacro11038 Vaccinium macrocarpon HOM05D007440 ORTHO05D009418 1.0e-64 250.8 211 64.0
Zm00001eb026400 Zea mays HOM05D007440 ORTHO05D009418 1.7e-64 250.0 207 62.3
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 1.7e-59 233.4 218 57.8
Lsat_1_v5_gn_7_9441 Lactuca sativa HOM05D007440 ORTHO05D009418 1.1e-58 230.7 223 57.8
Mapoly0046s0064 Marchantia polymorpha HOM05D007440 ORTHO05D009418 1.2e-57 227.3 214 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1381 Anthoceros agrestis HOM05D007440 ORTHO05D009418 6.5e-56 221.5 226 48.7
CSS0018984 Camellia sinensis var. sinensis HOM05D007440 ORTHO05D009418 1.5e-55 220.3 173 63.6
Pp3c17_10270 Physcomitrium patens HOM05D007440 ORTHO05D009418 5.7e-52 208.4 210 51.9
SMO347G0497 Selaginella moellendorffii HOM05D007440 ORTHO05D009418 2.8e-51 206.1 182 55.5
MBI03_g14514_MAGBIO Magnolia biondii HOM05D007440 ORTHO05D009418 1.6e-46 190.3 134 71.6
CBR_g29696 Chara braunii HOM05D007440 ORTHO05D009418 2.6e-44 183.0 289 37.0
Pp3c9_24070 Physcomitrium patens HOM05D007440 ORTHO05D009418 7.5e-44 181.4 213 47.9
PRCOL_00006364 Prasinoderma coloniale HOM05D007440 ORTHO05D009418 9.5e-39 164.5 213 39.0
Cre10.g451000 Chlamydomonas reinhardtii HOM05D007440 ORTHO05D009418 1.2e-33 147.5 224 39.7
MCO13G519 Micromonas commoda HOM05D007440 ORTHO05D009418 3.0e-32 142.9 247 33.6
Atru.chr13.2418 Acer truncatum HOM05D007440 ORTHO05D009418 2.0e-25 120.2 161 47.2
Glyma.08G367700 Glycine max HOM05D007440 ORTHO05D009418 7.8e-25 118.2 73 76.7
PSO782G5381 Papaver somniferum HOM05D007440 ORTHO05D009418 2.2e-19 100.1 67 70.1
ECA247G1028 Erigeron canadensis HOM05D006997 ORTHO05D008713 4.1e-18 95.9 207 30.4
SEGI_15929 Sequoiadendron giganteum HOM05D007440 ORTHO05D009418 2.1e-17 93.6 104 48.1
Prupe.1G523100 Prunus persica HOM05D006997 ORTHO05D008713 1.3e-16 90.9 202 29.7
MD08G1188600 Malus domestica HOM05D006997 ORTHO05D008713 1.7e-16 90.5 202 28.2
HanXRQChr02g0039281 Helianthus annuus HOM05D006997 ORTHO05D008713 8.6e-16 88.2 206 28.6
Actinidia30795 Actinidia chinensis HOM05D006997 ORTHO05D008713 1.1e-15 87.8 202 28.7
arahy.Tifrunner.gnm1.ann1.2V06JV Arachis hypogaea HOM05D006997 ORTHO05D008713 1.1e-15 87.8 205 28.8
arahy.Tifrunner.gnm1.ann1.50RG73 Arachis hypogaea HOM05D006997 ORTHO05D008713 1.1e-15 87.8 205 28.8
VMungo1309G1562 Vigna mungo HOM05D006997 ORTHO05D008713 1.1e-15 87.8 205 29.3
Pp3c2_7910 Physcomitrium patens HOM05D006997 ORTHO05D008713 1.5e-15 87.4 202 27.2
Sed0013982 Sechium edule HOM05D006997 ORTHO05D008713 1.5e-15 87.4 202 28.7
Cpa.g.sc36.182 Carica papaya HOM05D006997 ORTHO05D008713 1.9e-15 87.0 206 28.2
Lsat_1_v5_gn_1_3100 Lactuca sativa HOM05D006997 ORTHO05D008713 1.9e-15 87.0 202 28.7
Lalb_Chr08g0242211 Lupinus albus HOM05D006997 ORTHO05D008713 1.9e-15 87.0 205 28.3
Phvul.009G033100 Phaseolus vulgaris HOM05D006997 ORTHO05D008713 1.9e-15 87.0 205 29.3
Potri.002G100700 Populus trichocarpa HOM05D006997 ORTHO05D008713 1.9e-15 87.0 202 29.2
Atru.chr13.1117 Acer truncatum HOM05D006997 ORTHO05D008713 2.5e-15 86.7 202 29.7
Ciclev10001423m.g Citrus clementina HOM05D006997 ORTHO05D008713 2.5e-15 86.7 202 28.7
Cc10_g06680 Coffea canephora HOM05D006997 ORTHO05D008713 2.5e-15 86.7 202 28.2
MELO3C003553.2 Cucumis melo HOM05D006997 ORTHO05D008713 2.5e-15 86.7 202 28.7
CsaV3_3G047700 Cucumis sativus L. HOM05D006997 ORTHO05D008713 2.5e-15 86.7 202 28.2
Gohir.A01G132700 Gossypium hirsutum HOM05D006997 ORTHO05D008713 2.5e-15 86.7 205 27.8
RcHm_v2.0_Chr3g0492071 Rosa chinensis HOM05D006997 ORTHO05D008713 2.5e-15 86.7 202 28.7
Actinidia10345 Actinidia chinensis HOM05D006997 ORTHO05D008713 3.3e-15 86.3 202 28.2
COL.COLO4_12006 Corchorus olitorius HOM05D006997 ORTHO05D008713 3.3e-15 86.3 202 28.2
Gohir.D01G115600 Gossypium hirsutum HOM05D006997 ORTHO05D008713 3.3e-15 86.3 205 27.8
Gorai.002G141200 Gossypium raimondii HOM05D006997 ORTHO05D008713 3.3e-15 86.3 205 27.8
FvH4_5g36560 Fragaria vesca HOM05D006997 ORTHO05D008713 4.3e-15 85.9 202 28.7
Hund26989 Selenicereus undatus HOM05D006997 ORTHO05D008713 4.3e-15 85.9 202 28.2
Lj1g0014637 Lotus japonicus HOM05D006997 ORTHO05D008713 5.6e-15 85.5 205 27.3
CANSAT54G2489 Cannabis sativa HOM05D006997 ORTHO05D008713 7.3e-15 85.1 206 28.2
Duzib093G0368 Durio zibethinus HOM05D006997 ORTHO05D008713 7.3e-15 85.1 202 27.7
Glyma.04G099000 Glycine max HOM05D006997 ORTHO05D008713 7.3e-15 85.1 205 28.3
TPR.G18644 Trifolium pratense HOM05D006997 ORTHO05D008713 7.3e-15 85.1 205 28.3
FAN13G2131 Fragaria x ananassa HOM05D006997 ORTHO05D008713 9.5e-15 84.7 197 28.9
Migut.O00787 Erythranthe guttata HOM05D006997 ORTHO05D008713 1.2e-14 84.3 202 27.2
FAN18G0565 Fragaria x ananassa HOM05D006997 ORTHO05D008713 1.2e-14 84.3 197 28.9
Psat2g000280 Pisum sativum HOM05D006997 ORTHO05D008713 1.6e-14 84.0 205 28.3
Thecc.08G101800 Theobroma cacao HOM05D006997 ORTHO05D008713 1.6e-14 84.0 202 27.7
TWI56G0051 Tripterygium wilfordii HOM05D006997 ORTHO05D008713 1.6e-14 84.0 202 28.2
Duzib116G0677 Durio zibethinus HOM05D006997 ORTHO05D008713 2.1e-14 83.6 202 27.7
Duzib177G0102 Durio zibethinus HOM05D007440 ORTHO05D009418 2.1e-14 83.6 52 73.1
MBI02_g10710_MAGBIO Magnolia biondii HOM05D006997 ORTHO05D008713 2.1e-14 83.6 197 28.4
Manes.02G149000 Manihot esculenta HOM05D006997 ORTHO05D008713 2.1e-14 83.6 202 28.2
Sopen04g029680 Solanum pennellii HOM05D006997 ORTHO05D008713 2.1e-14 83.6 202 28.2
ECA247G2990 Erigeron canadensis HOM05D007440 ORTHO05D009418 2.8e-14 83.2 61 63.9
HPP92_005985 Vanilla planifolia HOM05D006997 ORTHO05D008713 2.8e-14 83.2 202 28.7
FAN08G2563 Fragaria x ananassa HOM05D006997 ORTHO05D008713 3.6e-14 82.8 197 28.4
Glyma.06G100700 Glycine max HOM05D006997 ORTHO05D008713 3.6e-14 82.8 205 27.8
Nn5g29994 Nelumbo nucifera HOM05D006997 ORTHO05D008713 3.6e-14 82.8 197 27.9
PGR042G3947 Punica granatum HOM05D006997 ORTHO05D008713 3.6e-14 82.8 202 27.7
Solyc04g074710.3 Solanum lycopersicum HOM05D006997 ORTHO05D008713 3.6e-14 82.8 202 28.2
ATR0684G208 Amborella trichopoda HOM05D006997 ORTHO05D008713 4.7e-14 82.4 205 27.3
CiPaw.15G045900 Carya illinoinensis HOM05D006997 ORTHO05D008713 6.2e-14 82.0 202 27.7
PGSC0003DMG400030838 Solanum tuberosum HOM05D006997 ORTHO05D008713 6.2e-14 82.0 202 27.2
Medtr5g099370 Medicago truncatula HOM05D006997 ORTHO05D008713 8.1e-14 81.6 205 27.8
THA.LOC104806793 Tarenaya hassleriana HOM05D006997 ORTHO05D008713 8.1e-14 81.6 203 28.1
CAN.G857.15 Capsicum annuum HOM05D006997 ORTHO05D008713 1.1e-13 81.3 202 27.2
Haze_18264 Corylus avellana HOM05D006997 ORTHO05D008713 1.1e-13 81.3 197 27.4
Eucgr.F00379 Eucalyptus grandis HOM05D006997 ORTHO05D008713 1.1e-13 81.3 202 27.2
PRCOL_00000168 Prasinoderma coloniale HOM05D006997 ORTHO05D008713 1.1e-13 81.3 203 27.6
QL02p002364 Quercus lobata HOM05D006997 ORTHO05D008713 1.1e-13 81.3 202 27.2
CSS0033006 Camellia sinensis var. sinensis HOM05D006997 ORTHO05D008713 1.8e-13 80.5 197 27.9
CSS0036565 Camellia sinensis var. sinensis HOM05D006997 ORTHO05D008713 1.8e-13 80.5 197 27.9
Mapoly0028s0040 Marchantia polymorpha HOM05D006997 ORTHO05D008713 1.8e-13 80.5 202 25.2
TAR381G0945 Trochodendron aralioides HOM05D006997 ORTHO05D008713 2.3e-13 80.1 197 28.4
PSO170G4713 Papaver somniferum HOM05D006997 ORTHO05D008713 3.1e-13 79.7 197 26.9
PSO700G0253 Papaver somniferum HOM05D006997 ORTHO05D008713 3.1e-13 79.7 197 26.9
DCAR_012882 Daucus carota HOM05D006997 ORTHO05D008713 4.0e-13 79.3 189 28.0
SGA_v2.0_scaffold28G11904 Striga asiatica HOM05D006997 ORTHO05D008713 4.0e-13 79.3 199 27.1
PSO447G0258 Papaver somniferum HOM05D006997 ORTHO05D008713 5.2e-13 79.0 196 26.5
Peaxi162Scf00030g02415 Petunia axillaris HOM05D006997 ORTHO05D008713 6.8e-13 78.6 202 26.7
SalBow1G8133 Salvia bowleyana HOM05D006997 ORTHO05D008713 8.9e-13 78.2 200 27.0
SMO203G0247 Selaginella moellendorffii HOM05D006997 ORTHO05D008713 8.9e-13 78.2 206 26.2
vmacro21291 Vaccinium macrocarpon HOM05D006997 ORTHO05D008713 8.9e-13 78.2 215 26.0
AagrBONN_evm.TU.Sc2ySwM_228.3329 Anthoceros agrestis HOM05D006997 ORTHO05D008713 1.2e-12 77.8 203 26.6
Nitab4.5_0005108g0030 Nicotiana tabacum HOM05D006997 ORTHO05D008713 1.5e-12 77.4 207 26.6
GSVIVG01009084001 Vitis vinifera HOM05D006997 ORTHO05D008713 2.6e-12 76.6 202 26.2
Cre12.g558400 Chlamydomonas reinhardtii HOM05D006997 ORTHO05D008713 4.4e-12 75.9 205 25.4
Hma1.2p1_1613F.1_g293656 Hydrangea macrophylla HOM05D006997 ORTHO05D008713 4.4e-12 75.9 197 25.9
Rhsim06G0078000 Rhododendron simsii HOM05D006997 ORTHO05D008713 5.8e-12 75.5 197 25.9
MD15G1376400 Malus domestica HOM05D006997 ORTHO05D008713 9.9e-12 74.7 177 28.8
Migut.N02878 Erythranthe guttata HOM05D006997 ORTHO05D008713 2.2e-11 73.6 179 27.4
arahy.Tifrunner.gnm1.ann1.M6BDRX Arachis hypogaea HOM05D006997 ORTHO05D008713 6.4e-11 72.0 215 27.0
ClCG11G014320 Citrullus lanatus HOM05D006997 ORTHO05D008713 6.4e-11 72.0 172 28.5
Lj4C96G9 Lonicera japonica HOM05D006997 ORTHO05D008713 8.4e-11 71.6 181 26.5
Nitab4.5_0000786g0050 Nicotiana tabacum HOM05D006997 ORTHO05D008713 5.4e-10 68.9 181 26.0
arahy.Tifrunner.gnm1.ann1.I3UG1J Arachis hypogaea HOM05D006997 ORTHO05D008713 3.5e-09 66.2 164 28.0
Ca_20316_v3 Cicer arietinum L. HOM05D006997 ORTHO05D008713 6.6e-08 62.0 100 33.0
arahy.Tifrunner.gnm1.ann1.L1DSY1 Arachis hypogaea HOM05D006997 ORTHO05D008713 5.6e-07 58.9 97 33.0
Aqoxy5G01920 Aquilegia oxysepala HOM05D006997 ORTHO05D008713 4.7e-06 55.8 97 29.9


User provided reference genes

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