Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 0.0e+00 1099.0 588 100.0
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 4.3e-264 914.4 594 84.5
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 1.2e-261 906.4 594 83.8
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 6.7e-257 890.6 591 84.9
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.9e-251 872.5 595 80.2
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 8.2e-231 803.9 471 88.5
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 7.7e-213 744.2 453 86.1
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 3.3e-171 605.9 611 59.4
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 2.9e-167 592.8 604 59.8
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.7e-167 592.4 604 60.1
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.4e-166 589.7 592 58.1
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.0e-160 570.1 489 65.6
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 5.4e-158 562.0 683 52.3
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 1.5e-155 553.9 622 55.0
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 8.1e-154 548.1 622 55.3
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 1.7e-148 530.4 628 55.4
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.3e-148 530.0 481 62.8
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 8.7e-148 528.1 645 53.5
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 1.3e-146 524.2 645 53.0
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 1.3e-146 524.2 476 62.6
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.4e-145 520.8 628 53.5
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.2e-144 517.7 627 53.7
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 7.6e-144 515.0 646 53.9
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 3.8e-143 512.7 624 54.0
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.4e-142 510.8 623 52.6
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.9e-142 510.4 586 57.2
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 2.4e-142 510.0 628 54.3
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.2e-142 509.2 642 52.2
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 7.1e-142 508.4 645 53.2
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 7.1e-142 508.4 623 52.5
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 9.3e-142 508.1 669 51.4
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.1e-140 502.3 642 53.3
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 6.7e-140 501.9 646 53.4
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 4.3e-139 499.2 618 51.6
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 4.8e-138 495.7 616 54.1
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 4.5e-136 489.2 627 54.2
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 5.8e-136 488.8 612 52.0
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.9e-134 483.8 691 50.1
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 3.2e-134 483.0 637 52.3
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.3e-134 481.5 659 51.0
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 3.9e-132 476.1 613 50.7
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 4.3e-131 472.6 656 50.8
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 5.7e-131 472.2 592 51.5
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 5.7e-131 472.2 610 52.5
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 9.6e-131 471.5 569 53.6
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 9.6e-131 471.5 615 52.5
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.3e-130 471.1 643 50.5
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.3e-130 471.1 606 52.8
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 3.7e-130 469.5 620 48.4
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 3.1e-129 466.5 616 51.3
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 3.1e-129 466.5 489 58.5
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.3e-129 465.7 468 57.9
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 9.0e-129 464.9 597 51.8
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.2e-128 464.5 508 56.3
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 3.4e-128 463.0 609 50.4
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 4.5e-128 462.6 530 53.0
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.0e-127 461.5 670 49.6
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.1e-126 458.0 495 57.4
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 1.1e-126 458.0 597 50.4
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 2.5e-126 456.8 602 51.7
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 2.1e-125 453.8 584 49.0
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 4.6e-125 452.6 602 48.0
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.8e-124 450.7 532 53.0
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 8.2e-122 441.8 642 47.7
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 9.0e-121 438.3 674 47.0
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.3e-119 434.5 492 55.3
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.9e-119 433.3 461 58.1
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 8.5e-119 431.8 522 53.3
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 3.6e-117 426.4 756 43.1
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 3.6e-117 426.4 591 49.1
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 3.6e-117 426.4 631 48.7
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 4.6e-117 426.0 756 42.9
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.1e-115 421.4 665 43.6
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 2.5e-115 420.2 632 44.8
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.3e-114 417.9 603 45.8
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 5.9e-112 409.1 570 48.9
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 2.2e-111 407.1 580 47.8
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.9e-111 406.8 382 61.8
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 3.8e-111 406.4 590 47.8
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.0e-108 398.3 587 48.9
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.4e-108 397.9 473 52.9
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.4e-108 397.9 656 44.5
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 2.3e-108 397.1 470 54.0
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 8.8e-108 395.2 488 52.3
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.3e-106 391.3 592 47.3
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.3e-106 391.3 525 48.8
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.7e-106 391.0 592 47.3
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 4.8e-106 389.4 538 48.0
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 9.1e-105 385.2 588 47.1
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.2e-104 384.8 589 47.4
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.2e-104 384.8 589 47.4
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 3.5e-104 383.3 533 48.0
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 4.1e-97 359.8 361 58.7
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 4.0e-92 343.2 395 53.4
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.2e-83 315.1 613 38.8
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 4.1e-81 306.6 284 57.7
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 4.5e-80 303.1 417 50.6
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.7e-79 301.2 254 64.2
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.5e-78 298.1 394 51.0
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.5e-78 297.4 393 51.1
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 2.8e-77 293.9 619 36.7
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.3e-76 290.8 299 54.8
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 7.3e-70 269.2 243 63.8
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.2e-66 257.7 247 61.9
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 2.9e-66 257.3 422 41.2
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.2e-61 241.9 369 51.2
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.2e-56 225.3 350 42.0
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 5.2e-52 209.9 178 63.5
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.5e-48 197.2 362 42.5
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.6e-46 189.1 231 48.1
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.7e-42 178.3 384 37.8
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.4e-41 175.3 236 49.6
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 1.6e-40 171.8 176 56.2
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.3e-34 152.1 139 56.8
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.1e-33 149.1 130 60.0
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 6.2e-29 133.3 98 69.4
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 8.1e-29 132.9 184 46.7
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.2e-27 129.0 98 68.4
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.3e-23 115.5 234 37.2
Peaxi162Scf00991g00335 Petunia axillaris HOM05D006007 ORTHO05D007518 2.3e-23 114.8 118 69.5
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 9.0e-20 102.8 401 26.7
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 6.5e-18 96.7 235 35.3
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 3.3e-14 84.3 70 60.0
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 3.3e-14 84.3 165 41.8
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 4.8e-13 80.5 65 61.5
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 1.7e-10 72.0 99 46.5
SGA_v2.0_scaffold52G19163 Striga asiatica HOM05D020362 ORTHO05D030297 9.3e-09 66.2 126 41.3
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.2e-08 65.9 163 36.2
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 2.7e-08 64.7 138 39.1


User provided reference genes

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