Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 0.0e+00 1662.5 842 100.0
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 0.0e+00 1406.7 784 88.9
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 0.0e+00 1325.1 848 77.9
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 0.0e+00 1238.4 785 79.1
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 0.0e+00 1228.4 785 78.1
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 0.0e+00 1165.2 779 74.8
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 0.0e+00 1118.2 787 74.2
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 2.3e-190 670.6 792 47.9
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 6.2e-188 662.5 798 46.5
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 2.5e-184 650.6 848 44.7
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 3.9e-182 643.3 792 43.8
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 9.6e-181 638.6 801 45.7
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.1e-179 635.2 842 42.5
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 1.5e-178 631.3 833 43.8
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 2.6e-178 630.6 837 43.6
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.0e-174 617.1 842 41.2
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 4.8e-172 609.8 848 41.5
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.8e-171 607.8 805 42.6
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 2.4e-171 607.4 806 42.9
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 2.6e-170 604.0 795 42.4
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 8.5e-169 599.0 808 43.1
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 1.1e-168 598.6 853 39.6
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 5.5e-168 596.3 788 42.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 1.2e-167 595.1 848 40.7
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 7.9e-167 592.4 848 39.5
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 2.3e-166 590.9 795 43.1
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 2.0e-162 577.8 794 42.6
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 5.9e-162 576.2 730 44.8
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 1.9e-160 571.2 764 42.0
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 5.5e-160 569.7 834 40.0
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.1e-155 555.4 785 39.2
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 1.0e-153 548.9 755 40.0
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 1.7e-153 548.1 792 38.6
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 3.2e-152 543.9 684 43.6
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 6.7e-150 536.2 804 39.2
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 1.1e-149 535.4 785 39.6
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 2.8e-148 530.8 855 38.8
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 3.7e-148 530.4 786 38.8
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 8.2e-148 529.3 640 45.3
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.4e-147 528.5 766 38.8
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 2.4e-147 527.7 791 39.2
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 1.7e-145 521.5 759 38.5
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 5.0e-145 520.0 731 39.4
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 7.2e-144 516.2 799 35.5
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 7.2e-144 516.2 781 38.9
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 2.1e-143 514.6 801 37.7
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 3.6e-143 513.8 690 42.6
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 2.0e-141 508.1 790 38.0
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 3.4e-141 507.3 755 40.9
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 1.7e-140 505.0 851 35.8
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 4.8e-140 503.4 823 36.8
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 6.3e-140 503.1 830 35.2
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.8e-139 501.5 769 38.1
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 1.2e-138 498.8 823 36.7
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 3.5e-138 497.3 675 41.6
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 1.0e-137 495.7 794 36.9
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 8.5e-137 492.7 732 38.9
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.9e-136 491.5 694 36.7
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 4.9e-132 476.9 848 35.1
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 3.1e-131 474.2 798 36.1
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 4.1e-131 473.8 761 36.8
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 4.7e-127 460.3 752 37.2
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 2.3e-126 458.0 762 35.0
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 1.2e-125 455.7 761 36.1
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 3.2e-123 447.6 685 37.8
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 9.2e-123 446.0 834 35.0
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 1.0e-121 442.6 815 34.4
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 1.9e-120 438.3 692 36.6
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 2.5e-120 438.0 781 34.2
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 3.3e-120 437.6 679 36.4
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 6.8e-118 429.9 747 34.8
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 6.8e-118 429.9 683 34.0
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 5.8e-117 426.8 794 32.9
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 5.8e-117 426.8 794 32.9
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 3.7e-116 424.1 794 32.6
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 1.4e-115 422.2 776 33.5
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 9.2e-115 419.5 817 34.4
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 8.6e-113 412.9 634 33.6
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 1.1e-112 412.5 790 33.5
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.0e-109 401.7 811 29.5
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.3e-104 384.0 774 34.0
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 2.0e-101 375.2 751 33.0
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 8.4e-100 369.8 780 32.2
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 2.3e-97 361.7 683 32.9
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 1.5e-93 349.0 765 31.2
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.8e-87 327.4 730 29.3
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.3e-86 323.9 618 35.8
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 1.0e-81 309.7 370 44.9
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 1.3e-79 302.8 776 28.4
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 3.6e-79 301.2 693 31.6
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 8.1e-71 273.5 349 42.4
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.1e-63 248.8 349 39.5
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 8.2e-63 246.9 258 46.5
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.4e-53 214.9 300 41.7
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 2.2e-47 195.7 209 46.9
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 3.7e-47 194.9 467 32.5
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 3.7e-47 194.9 594 27.6
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 1.1e-46 193.4 199 45.7
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 7.2e-43 180.6 529 28.2
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 4.7e-42 177.9 444 31.1
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 5.1e-41 174.5 181 47.5
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.8e-38 166.0 178 44.9
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.3e-23 114.4 191 36.6
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 8.3e-23 114.0 191 36.6
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-13 83.6 118 40.7
Lsat_1_v5_gn_1_46480 Lactuca sativa HOM05D001126 ORTHO05D000991 1.1e-11 77.0 82 48.8
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 1.1e-11 77.0 492 23.0
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.5e-11 75.9 214 27.6
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 5.6e-11 74.7 235 23.8
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 1.2e-10 73.6 156 28.8
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 8.0e-10 70.9 233 21.0
RcHm_v2.0_Chr4g0408211 Rosa chinensis HOM05D008684 ORTHO05D010796 2.3e-09 69.3 250 23.6
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 5.2e-09 68.2 207 27.5
SEGI_06165 Sequoiadendron giganteum HOM05D007655 ORTHO05D009698 8.9e-09 67.4 166 25.9
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 1.5e-08 66.6 190 24.2
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 3.4e-08 65.5 87 33.3
Migut.A00274 Erythranthe guttata HOM05D000175 ORTHO05D010751 5.7e-08 64.7 239 21.8
COL.COLO4_05513 Corchorus olitorius HOM05D007830 ORTHO05D009947 7.5e-08 64.3 150 26.0
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 7.5e-08 64.3 90 34.4
Glyma.01G057600 Glycine max HOM05D005622 ORTHO05D002854 9.8e-08 63.9 256 23.0
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 9.8e-08 63.9 179 25.7
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 1.7e-07 63.2 170 22.9
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 1.7e-07 63.2 170 22.4
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 1.7e-07 63.2 170 22.4
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.7e-07 63.2 255 22.0
Peaxi162Scf00231g00042 Petunia axillaris HOM05D007173 ORTHO05D009151 2.2e-07 62.8 166 23.5
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.9e-07 61.6 251 21.1
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 4.9e-07 61.6 187 21.4
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 6.4e-07 61.2 178 24.7
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 8.3e-07 60.8 186 22.6
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 1.1e-06 60.5 209 22.5
Os07g0101200 Oryza sativa ssp. japonica HOM05D002453 ORTHO05D002107 1.4e-06 60.1 201 22.9
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 1.4e-06 60.1 488 19.7
PGR042G2623 Punica granatum HOM05D007956 ORTHO05D010152 1.4e-06 60.1 307 21.2
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.4e-06 59.3 226 22.1
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 2.4e-06 59.3 253 22.9
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 2.4e-06 59.3 225 25.3
Lsat_1_v5_gn_3_126181 Lactuca sativa HOM05D007173 ORTHO05D009151 5.4e-06 58.2 170 21.2
AT1G26500 Arabidopsis thaliana HOM05D005622 ORTHO05D002854 9.2e-06 57.4 179 24.0


User provided reference genes

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