Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000209g0160 Nicotiana tabacum HOM05D009490 ORTHO05D011730 2.7e-85 318.5 152 100.0
Nitab4.5_0009401g0030 Nicotiana tabacum HOM05D009490 ORTHO05D011730 3.5e-69 265.0 147 86.4
Nitab4.5_0004703g0010 Nicotiana tabacum HOM05D009490 ORTHO05D011730 3.0e-68 261.9 147 84.4
Nitab4.5_0001164g0070 Nicotiana tabacum HOM05D009490 ORTHO05D011730 6.9e-65 250.8 141 85.1
Nitab4.5_0000045g0180 Nicotiana tabacum HOM05D009490 ORTHO05D011730 4.5e-64 248.1 142 84.5
Nitab4.5_0000574g0210 Nicotiana tabacum HOM05D009490 ORTHO05D011730 1.9e-62 242.7 143 82.5
Nitab4.5_0002918g0100 Nicotiana tabacum HOM05D009490 ORTHO05D011730 7.2e-54 214.2 126 81.7
Nitab4.5_0003027g0030 Nicotiana tabacum HOM05D009490 ORTHO05D011730 5.0e-47 191.4 101 91.1
Nitab4.5_0006425g0060 Nicotiana tabacum HOM05D009490 ORTHO05D011730 2.0e-43 179.5 103 85.4
Nitab4.5_0000030g0050 Nicotiana tabacum HOM05D009490 ORTHO05D011730 3.0e-36 155.6 94 81.9
Nitab4.5_0000150g0010 Nicotiana tabacum HOM05D009490 ORTHO05D011730 2.0e-35 152.9 147 59.9
Nitab4.5_0013034g0050 Nicotiana tabacum HOM05D009490 ORTHO05D011730 1.1e-30 137.1 104 68.3
Nitab4.5_0010993g0030 Nicotiana tabacum HOM05D009490 ORTHO05D011730 5.4e-25 118.2 82 75.6
Nitab4.5_0000335g0190 Nicotiana tabacum HOM05D009490 ORTHO05D011730 5.0e-23 111.7 60 86.7
Nitab4.5_0000783g0300 Nicotiana tabacum HOM05D009490 ORTHO05D011730 6.5e-23 111.3 148 46.6
Peaxi162Scf00318g00042 Petunia axillaris HOM05D024560 ORTHO05D000482 1.9e-22 109.8 154 40.9
Nitab4.5_0000033g0320 Nicotiana tabacum HOM05D009490 ORTHO05D011730 4.2e-22 108.6 79 70.9
Nitab4.5_0000882g0100 Nicotiana tabacum HOM05D009490 ORTHO05D011730 1.2e-21 107.1 83 67.5
Nitab4.5_0013034g0010 Nicotiana tabacum HOM05D009490 ORTHO05D011730 5.7e-19 98.2 53 90.6
Nitab4.5_0000459g0010 Nicotiana tabacum HOM05D009490 ORTHO05D011730 6.3e-18 94.7 57 80.7
Nitab4.5_0000354g0190 Nicotiana tabacum HOM05D009490 ORTHO05D011730 1.4e-17 93.6 49 93.9
Nitab4.5_0000160g0030 Nicotiana tabacum HOM05D009490 ORTHO05D011730 7.8e-16 87.8 57 77.2
Sopen11g025370 Solanum pennellii HOM05D000541 ORTHO05D000137 4.3e-14 82.0 111 39.6
PGSC0003DMG400025087 Solanum tuberosum HOM05D000541 ORTHO05D000137 4.7e-13 78.6 114 39.5
PGSC0003DMG400001303 Solanum tuberosum HOM05D000541 ORTHO05D000137 8.0e-13 77.8 114 38.6
Nitab4.5_0013731g0010 Nicotiana tabacum HOM05D001787 ORTHO05D003488 1.5e-11 73.6 49 75.5
Sopen01g028070 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-11 72.8 102 37.3
Sopen05g014530 Solanum pennellii HOM05D007732 ORTHO05D010105 3.7e-10 68.9 93 44.1
Nitab4.5_0004953g0050 Nicotiana tabacum HOM05D009490 ORTHO05D011730 6.4e-10 68.2 49 77.6
Nitab4.5_0001356g0090 Nicotiana tabacum HOM05D009490 ORTHO05D011730 1.4e-09 67.0 38 81.6
CAN.G1236.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-09 66.6 104 36.5
CAN.G1242.2 Capsicum annuum HOM05D000541 ORTHO05D000137 4.1e-09 65.5 93 37.6
BcaB08g35415 Brassica carinata HOM05D001038 ORTHO05D000395 5.4e-09 65.1 141 30.5
CAN.G98.8 Capsicum annuum HOM05D000541 ORTHO05D000137 5.4e-09 65.1 81 40.7
AT1G31150 Arabidopsis thaliana HOM05D000675 ORTHO05D000395 7.0e-09 64.7 99 33.3
CANSAT21G1032 Cannabis sativa HOM05D031271 ORTHO05D000397 9.2e-09 64.3 111 35.1
Nitab4.5_0003111g0010 Nicotiana tabacum HOM05D005063 ORTHO05D000482 1.2e-08 63.9 123 30.9
BcaB07g30174 Brassica carinata HOM05D001038 ORTHO05D000395 1.6e-08 63.5 128 30.5
CANSAT80G2652 Cannabis sativa HOM05D023333 ORTHO05D000137 2.0e-08 63.2 123 32.5
Carub.0001s2955 Capsella rubella HOM05D000675 ORTHO05D000395 2.0e-08 63.2 128 30.5
Carub.0002s0943 Capsella rubella HOM05D000675 ORTHO05D000395 2.0e-08 63.2 74 39.2
BcaC09g50083 Brassica carinata HOM05D001038 ORTHO05D000395 2.7e-08 62.8 143 25.9
CAN.G959.21 Capsicum annuum HOM05D000541 ORTHO05D000137 2.7e-08 62.8 95 37.9
BcaB01g00119 Brassica carinata HOM05D001038 ORTHO05D000395 4.6e-08 62.0 117 31.6
CANSAT56G0081 Cannabis sativa HOM05D031271 ORTHO05D000397 4.6e-08 62.0 111 34.2
BolC7t41881H Brassica oleracea HOM05D001038 ORTHO05D000395 5.9e-08 61.6 115 32.2
CAN.G681.13 Capsicum annuum HOM05D000541 ORTHO05D000137 5.9e-08 61.6 81 39.5
Ciclev10003531m.g Citrus clementina HOM05D002262 ORTHO05D000482 5.9e-08 61.6 128 33.6
CAN.G371.112 Capsicum annuum HOM05D000541 ORTHO05D000137 7.8e-08 61.2 81 39.5
PGSC0003DMG400000031 Solanum tuberosum HOM05D005063 ORTHO05D000482 7.8e-08 61.2 63 44.4
PGSC0003DMG400017393 Solanum tuberosum HOM05D007732 ORTHO05D010105 7.8e-08 61.2 81 42.0
CAN.G567.26 Capsicum annuum HOM05D000541 ORTHO05D000137 1.0e-07 60.8 132 32.6
Nitab4.5_0000113g0280 Nicotiana tabacum HOM05D002262 ORTHO05D000482 1.0e-07 60.8 69 44.9
BcaB04g17766 Brassica carinata HOM05D001038 ORTHO05D000395 1.3e-07 60.5 90 37.8
BcaB08g34565 Brassica carinata HOM05D001038 ORTHO05D000395 1.3e-07 60.5 73 37.0
BcaC07g37762 Brassica carinata HOM05D001038 ORTHO05D000395 1.3e-07 60.5 72 38.9
C06p03930 Brassica napus HOM05D001038 ORTHO05D000395 1.3e-07 60.5 72 36.1
BolC8t48147H Brassica oleracea HOM05D001038 ORTHO05D000395 1.3e-07 60.5 72 38.9
BcaB03g12379 Brassica carinata HOM05D001038 ORTHO05D000395 1.7e-07 60.1 138 27.5
BcaC03g17929 Brassica carinata HOM05D001038 ORTHO05D000395 1.7e-07 60.1 117 29.1
BcaC05g25823 Brassica carinata HOM05D001038 ORTHO05D014932 1.7e-07 60.1 72 38.9
CAN.G724.18 Capsicum annuum HOM05D000541 ORTHO05D000137 1.7e-07 60.1 81 39.5
MELO3C007522.2 Cucumis melo HOM05D007907 ORTHO05D009079 1.7e-07 60.1 90 37.8
C09p35780 Brassica napus HOM05D001038 ORTHO05D000395 2.3e-07 59.7 73 35.6
BolC9t56412H Brassica oleracea HOM05D001038 ORTHO05D000395 2.3e-07 59.7 73 35.6
CAN.G315.4 Capsicum annuum HOM05D000541 ORTHO05D000137 2.3e-07 59.7 81 39.5
Nitab4.5_0005705g0060 Nicotiana tabacum HOM05D002262 ORTHO05D000482 2.3e-07 59.7 111 30.6
A02p27290 Brassica napus HOM05D001038 ORTHO05D000395 3.0e-07 59.3 121 30.6
BraA02t07755Z Brassica rapa HOM05D001038 ORTHO05D000395 3.0e-07 59.3 121 30.6
CAN.G23.8 Capsicum annuum HOM05D000541 ORTHO05D000137 3.0e-07 59.3 81 38.3
Nitab4.5_0002160g0110 Nicotiana tabacum HOM05D000713 ORTHO05D000482 3.0e-07 59.3 108 32.4
BcaB02g10843 Brassica carinata HOM05D001038 ORTHO05D000395 3.9e-07 58.9 72 38.9
BcaC05g27733 Brassica carinata HOM05D001038 ORTHO05D000395 3.9e-07 58.9 141 25.5
C03p74230 Brassica napus HOM05D001038 ORTHO05D000395 3.9e-07 58.9 119 30.3
BolC3t19681H Brassica oleracea HOM05D001038 ORTHO05D000395 3.9e-07 58.9 119 30.3
Nitab4.5_0000227g0060 Nicotiana tabacum HOM05D005063 ORTHO05D000482 3.9e-07 58.9 65 43.1
BcaB06g26021 Brassica carinata HOM05D001038 ORTHO05D000395 6.6e-07 58.2 82 36.6
BcaC08g46980 Brassica carinata HOM05D001038 ORTHO05D000395 6.6e-07 58.2 74 32.4
A01p24490 Brassica napus HOM05D001038 ORTHO05D021947 6.6e-07 58.2 117 27.4
A04p11380 Brassica napus HOM05D001038 ORTHO05D000395 6.6e-07 58.2 70 35.7
BraA04t16800Z Brassica rapa HOM05D001038 ORTHO05D000395 6.6e-07 58.2 70 35.7
BcaC08g46850 Brassica carinata HOM05D001038 ORTHO05D000395 8.6e-07 57.8 82 34.1
SGA_v2.0_scaffold276G46661 Striga asiatica HOM05D000679 ORTHO05D000137 8.6e-07 57.8 111 31.5
SGA_v2.0_scaffold4G02340 Striga asiatica HOM05D000679 ORTHO05D000482 8.6e-07 57.8 111 31.5
SGA_v2.0_scaffold59G20643 Striga asiatica HOM05D000679 ORTHO05D000137 8.6e-07 57.8 111 31.5
BcaB01g01124 Brassica carinata HOM05D001038 ORTHO05D000395 1.1e-06 57.4 64 39.1
BcaB05g22367 Brassica carinata HOM05D000675 ORTHO05D000395 1.1e-06 57.4 110 30.9
BcaB06g27965 Brassica carinata HOM05D001038 ORTHO05D000395 1.1e-06 57.4 92 37.0
BcaC04g20742 Brassica carinata HOM05D001038 ORTHO05D010763 1.1e-06 57.4 141 27.7
A06p26760 Brassica napus HOM05D001038 ORTHO05D000395 1.1e-06 57.4 82 31.7
C05p37210 Brassica napus HOM05D001038 ORTHO05D000395 1.1e-06 57.4 73 32.9
C09p39690 Brassica napus HOM05D001038 ORTHO05D000395 1.1e-06 57.4 141 27.7
BolC9t56849H Brassica oleracea HOM05D001038 ORTHO05D000395 1.1e-06 57.4 141 27.7
SGA_v2.0_scaffold76G25157 Striga asiatica HOM05D002262 ORTHO05D000137 1.1e-06 57.4 89 34.8
A01p14500 Brassica napus HOM05D000975 ORTHO05D000395 1.5e-06 57.0 116 31.0
A09p29870 Brassica napus HOM05D000975 ORTHO05D000395 1.5e-06 57.0 116 31.0
C07p15560 Brassica napus HOM05D001038 ORTHO05D000395 1.5e-06 57.0 72 36.1
CAN.G572.21 Capsicum annuum HOM05D000541 ORTHO05D000137 1.5e-06 57.0 92 34.8
CsaV3_6G042820 Cucumis sativus L. HOM05D007907 ORTHO05D009079 1.5e-06 57.0 90 36.7
BcaB04g19295 Brassica carinata HOM05D001038 ORTHO05D000395 1.9e-06 56.6 83 34.9
BcaB07g31602 Brassica carinata HOM05D000675 ORTHO05D000395 1.9e-06 56.6 110 30.9
BcaB02g10939 Brassica carinata HOM05D001038 ORTHO05D000395 2.5e-06 56.2 64 39.1
BcaC03g15415 Brassica carinata HOM05D001038 ORTHO05D000395 2.5e-06 56.2 141 28.4
Sopen01g038220 Solanum pennellii HOM05D005063 ORTHO05D000482 2.5e-06 56.2 63 41.3
AL5G24460 Arabidopsis lyrata HOM05D001038 ORTHO05D000395 3.3e-06 55.8 109 32.1
BcaC06g34271 Brassica carinata HOM05D001038 ORTHO05D000395 3.3e-06 55.8 78 35.9
BcaC08g47005 Brassica carinata HOM05D001038 ORTHO05D000395 3.3e-06 55.8 81 33.3
BraA07t28816Z Brassica rapa HOM05D001038 ORTHO05D000395 3.3e-06 55.8 79 34.2
BraA09t37384Z Brassica rapa HOM05D000975 ORTHO05D000395 3.3e-06 55.8 117 29.9
SGA_v2.0_scaffold126G33830 Striga asiatica HOM05D000679 ORTHO05D000137 3.3e-06 55.8 79 38.0
SGA_v2.0_scaffold178G39480 Striga asiatica HOM05D002262 ORTHO05D000137 3.3e-06 55.8 79 38.0
BcaB01g00832 Brassica carinata HOM05D001038 ORTHO05D000395 4.3e-06 55.5 72 36.1
C02p44860 Brassica napus HOM05D000975 ORTHO05D000395 4.3e-06 55.5 116 31.0
BraA06t25413Z Brassica rapa HOM05D001038 ORTHO05D000395 4.3e-06 55.5 73 34.2
Carub.0013s0014 Capsella rubella HOM05D001038 ORTHO05D000395 4.3e-06 55.5 63 39.7
Nitab4.5_0000326g0300 Nicotiana tabacum HOM05D005063 ORTHO05D000482 4.3e-06 55.5 100 33.0
Sopen06g002980 Solanum pennellii HOM05D005063 ORTHO05D000482 4.3e-06 55.5 81 40.7
BcaC08g43120 Brassica carinata HOM05D001038 ORTHO05D032078 5.6e-06 55.1 62 37.1
A04p22180 Brassica napus HOM05D001038 ORTHO05D000395 5.6e-06 55.1 114 27.2
A09p31720 Brassica napus HOM05D000975 ORTHO05D000395 5.6e-06 55.1 116 30.2
BolC7t41688H Brassica oleracea HOM05D001038 ORTHO05D000395 5.6e-06 55.1 73 32.9
BolC7t42043H Brassica oleracea HOM05D001038 ORTHO05D000395 5.6e-06 55.1 72 34.7
BraA05t19810Z Brassica rapa HOM05D001038 ORTHO05D016703 5.6e-06 55.1 70 37.1
BraA09t38304Z Brassica rapa HOM05D000975 ORTHO05D000395 5.6e-06 55.1 116 30.2
BraA10t43039Z Brassica rapa HOM05D001038 ORTHO05D000395 5.6e-06 55.1 114 27.2
Nitab4.5_0010313g0020 Nicotiana tabacum HOM05D005877 ORTHO05D000482 5.6e-06 55.1 63 42.9
Nitab4.5_0022061g0010 Nicotiana tabacum HOM05D005877 ORTHO05D010356 5.6e-06 55.1 63 39.7
PGSC0003DMG400014694 Solanum tuberosum HOM05D005063 ORTHO05D000482 5.6e-06 55.1 81 40.7
BcaB06g26720 Brassica carinata HOM05D001038 ORTHO05D000395 7.3e-06 54.7 82 36.6
A01p33200 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A03p63730 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A03p64300 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A03p68230 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A05p31260 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A06p23370 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A06p27620 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A07p22620 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
A10p04890 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
C02p32270 Brassica napus HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
C02p45440 Brassica napus HOM05D001038 ORTHO05D000395 7.3e-06 54.7 73 34.2
BraA01t03457Z Brassica rapa HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
BraA02t08986Z Brassica rapa HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
BraA06t23870Z Brassica rapa HOM05D000975 ORTHO05D000395 7.3e-06 54.7 116 30.2
Solyc06g008150.3 Solanum lycopersicum HOM05D005063 ORTHO05D000482 7.3e-06 54.7 81 40.7
SGA_v2.0_scaffold23G10125 Striga asiatica HOM05D000679 ORTHO05D000137 7.3e-06 54.7 74 37.8
C06p29670 Brassica napus HOM05D000975 ORTHO05D000395 9.5e-06 54.3 116 30.2
C07p11500 Brassica napus HOM05D000975 ORTHO05D000395 9.5e-06 54.3 116 30.2
C07p32030 Brassica napus HOM05D000975 ORTHO05D000395 9.5e-06 54.3 116 30.2
C08p14250 Brassica napus HOM05D000975 ORTHO05D000395 9.5e-06 54.3 116 30.2
C09p60390 Brassica napus HOM05D001038 ORTHO05D016703 9.5e-06 54.3 70 34.3
BraA05t20013Z Brassica rapa HOM05D001038 ORTHO05D000395 9.5e-06 54.3 75 32.0


User provided reference genes

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