Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.8e-133 478.0 272 100.0
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 3.4e-107 392.1 260 83.8
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 9.7e-102 374.0 272 77.9
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 9.7e-102 374.0 272 78.7
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.8e-101 372.5 272 77.9
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.0e-99 366.3 257 80.5
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.4e-92 342.8 272 72.8
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.3e-90 337.0 272 72.1
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 6.5e-90 334.7 272 71.7
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 4.4e-86 322.0 258 71.3
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 2.8e-85 319.3 253 71.1
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.2e-83 313.9 273 67.0
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.7e-83 312.8 258 70.5
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 3.5e-83 312.4 269 69.5
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 5.9e-83 311.6 273 66.3
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 1.7e-82 310.1 253 68.8
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 8.5e-82 307.8 253 69.2
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 3.2e-81 305.8 253 68.0
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 5.5e-81 305.1 274 66.1
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.2e-80 303.9 274 65.7
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 8.0e-80 301.2 253 68.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.8e-79 300.1 253 68.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.3e-79 299.7 253 68.0
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.3e-79 299.7 253 68.4
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.0e-79 298.9 253 68.4
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 8.8e-79 297.7 269 65.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.4e-78 295.4 250 68.0
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 5.7e-78 295.0 252 67.1
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 1.3e-77 293.9 255 68.6
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.3e-77 293.9 271 65.7
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.1e-76 290.8 253 66.0
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.1e-76 290.8 253 68.0
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.6e-75 287.0 253 65.6
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 4.5e-75 285.4 271 65.3
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 7.7e-75 284.6 251 66.1
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.0e-74 284.3 253 65.2
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 2.9e-74 282.7 255 64.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 3.8e-74 282.3 253 67.2
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 1.1e-73 280.8 253 64.8
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 1.1e-73 280.8 253 65.6
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.1e-73 280.8 249 64.3
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.5e-73 280.4 277 60.3
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.9e-73 280.0 253 65.2
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 2.5e-73 279.6 254 65.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.2e-73 278.9 253 63.6
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 7.2e-73 278.1 249 65.9
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.2e-72 277.3 253 64.4
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 2.7e-72 276.2 252 69.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 1.8e-71 273.5 253 64.0
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 2.3e-71 273.1 250 68.0
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 2.3e-71 273.1 252 64.7
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.0e-71 272.3 325 55.4
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 6.8e-71 271.6 251 63.7
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 6.8e-71 271.6 254 63.4
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 8.8e-71 271.2 250 66.4
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 8.8e-71 271.2 252 62.7
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 7.5e-70 268.1 261 60.9
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 1.7e-69 266.9 228 69.7
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.1e-68 264.2 262 59.9
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.1e-68 264.2 251 61.4
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.8e-68 263.5 255 59.6
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-68 263.5 253 60.9
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.4e-68 263.1 230 67.4
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.4e-68 263.1 247 62.8
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.1e-68 262.3 253 60.5
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 5.4e-68 261.9 267 60.7
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 7.0e-68 261.5 256 59.8
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 9.2e-68 261.2 255 57.3
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.5e-67 258.8 286 55.2
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 5.9e-67 258.5 251 64.1
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 5.9e-67 258.5 256 60.5
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 7.7e-67 258.1 252 61.5
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 7.7e-67 258.1 253 63.2
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.0e-66 257.7 261 60.2
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.0e-66 257.7 253 59.7
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 2.9e-66 256.1 251 59.4
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 6.6e-66 255.0 257 56.8
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 8.6e-66 254.6 249 60.6
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 8.6e-66 254.6 247 60.3
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.1e-65 254.2 247 61.9
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.9e-65 253.4 252 61.1
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 5.6e-65 251.9 252 60.7
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.2e-64 250.8 255 60.8
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 2.1e-64 250.0 255 60.4
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.1e-64 250.0 253 61.7
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 2.8e-64 249.6 257 57.6
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 6.1e-64 248.4 247 64.0
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 4.0e-63 245.7 254 59.1
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 6.8e-63 245.0 255 59.6
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.2e-62 244.2 252 58.7
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.6e-62 243.0 260 60.0
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 5.7e-62 241.9 247 59.5
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 7.5e-62 241.5 250 60.0
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.7e-61 240.4 253 58.1
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 5.4e-60 235.3 156 82.1
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 7.0e-60 235.0 252 57.5
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 7.0e-60 235.0 385 44.2
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.6e-59 233.8 252 57.5
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 2.0e-59 233.4 254 57.5
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.0e-59 233.4 254 62.6
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 3.5e-59 232.6 252 58.3
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.8e-59 231.5 252 56.3
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.7e-58 230.3 254 57.5
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.9e-57 226.9 252 55.2
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.9e-57 226.9 250 55.2
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 2.5e-57 226.5 252 56.3
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 2.5e-57 226.5 148 83.1
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.5e-57 226.5 252 55.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 5.6e-57 225.3 153 80.4
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 7.3e-57 224.9 224 59.8
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 3.6e-56 222.6 178 71.9
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.8e-54 214.5 305 46.9
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.9e-53 213.0 220 61.4
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.1e-52 209.1 271 49.8
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 7.0e-52 208.4 175 68.0
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 3.0e-50 203.0 206 61.7
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 2.0e-46 190.3 252 50.0
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 2.4e-44 183.3 220 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 7.1e-44 181.8 275 44.7
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 2.7e-43 179.9 249 45.4
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.7e-40 169.1 196 55.6
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.4e-38 162.5 252 45.2
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.6e-35 154.1 279 38.7
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 6.6e-34 148.7 95 82.1
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 8.6e-34 148.3 182 52.2
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 3.6e-32 142.9 181 51.9
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.8e-31 140.6 95 78.9
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.8e-31 140.6 182 50.0
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 4.0e-31 139.4 267 43.1
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.3e-29 134.4 134 57.5
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 1.2e-19 101.3 123 45.5
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 3.9e-18 96.3 95 58.9
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 6.7e-18 95.5 230 38.7
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 1.9e-17 94.0 154 42.9
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.6e-16 90.9 65 73.8
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.1e-15 86.7 75 61.3
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 5.8e-14 82.4 54 83.3
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.4e-12 77.8 54 74.1
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 5.5e-12 75.9 172 35.5
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 7.1e-12 75.5 132 39.4
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 1.3e-10 71.2 102 43.1
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.8e-10 70.9 92 47.8
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 1.5e-09 67.8 63 57.1
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.6e-09 65.9 38 76.3
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 7.6e-06 55.5 104 41.3


User provided reference genes

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