Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000203g0050 Nicotiana tabacum HOM05D017486 ORTHO05D020322 1.4e-161 572.8 276 100.0
Peaxi162Scf00338g00038 Petunia axillaris HOM05D017486 ORTHO05D020322 2.6e-126 455.7 266 82.7
PGSC0003DMG400030983 Solanum tuberosum HOM05D017486 ORTHO05D020322 8.6e-122 440.7 277 77.6
Nitab4.5_0005523g0030 Nicotiana tabacum HOM05D017486 ORTHO05D020322 2.5e-121 439.1 233 90.1
Solyc05g005530.3 Solanum lycopersicum HOM05D017486 ORTHO05D020322 9.5e-113 410.6 278 73.7
Sopen05g001540 Solanum pennellii HOM05D017486 ORTHO05D020322 1.0e-53 214.5 162 66.0
CAN.G507.13 Capsicum annuum HOM05D017486 ORTHO05D020322 6.5e-45 185.3 125 69.6
EL10Ac6g15229 Beta vulgaris HOM05D000318 ORTHO05D000420 2.1e-11 73.9 282 26.2
Potri.006G177900 Populus trichocarpa HOM05D000318 ORTHO05D000420 6.8e-10 68.9 287 26.1
VMungo1309G2887 Vigna mungo HOM05D000318 ORTHO05D000420 2.6e-09 67.0 289 22.8
Pp3c19_5840 Physcomitrium patens HOM05D000318 ORTHO05D000420 3.4e-09 66.6 290 25.9
Eucgr.C01243 Eucalyptus grandis HOM05D000318 ORTHO05D000420 1.3e-08 64.7 284 22.5
Lj1g0003076 Lotus japonicus HOM05D000318 ORTHO05D000420 1.3e-08 64.7 263 25.9
PGR142G3050 Punica granatum HOM05D000318 ORTHO05D000420 1.3e-08 64.7 285 23.2
CiPaw.15G122200 Carya illinoinensis HOM05D000318 ORTHO05D000420 2.2e-08 63.9 251 23.9
SalBow1G6591 Salvia bowleyana HOM05D000318 ORTHO05D000420 2.2e-08 63.9 141 27.7
AUR62028404 Chenopodium quinoa HOM05D000318 ORTHO05D000420 2.8e-08 63.5 284 23.6
Sabra06G0135400 Salix brachista HOM05D000318 ORTHO05D000420 3.7e-08 63.2 286 24.1
Sc18g0003270 Simmondsia chinensis HOM05D000318 ORTHO05D000420 4.8e-08 62.8 283 24.7
AUR62039758 Chenopodium quinoa HOM05D000318 ORTHO05D000420 6.3e-08 62.4 284 23.6
unitig_60.g25505 Utricularia gibba HOM05D000318 ORTHO05D000420 6.3e-08 62.4 175 27.4
Ciclev10009180m.g Citrus clementina HOM05D000318 ORTHO05D000420 8.3e-08 62.0 268 24.6
Phvul.004G171300 Phaseolus vulgaris HOM05D000318 ORTHO05D000420 8.3e-08 62.0 268 25.4
Migut.J01412 Erythranthe guttata HOM05D000318 ORTHO05D000420 1.1e-07 61.6 284 24.6
Sp7g28310 Schrenkiella parvula HOM05D000318 ORTHO05D000420 1.1e-07 61.6 229 25.3
Cpa.g.sc71.61 Carica papaya HOM05D000318 ORTHO05D000420 1.8e-07 60.8 262 23.7
Lj9A727T18 Lonicera japonica HOM05D000318 ORTHO05D000420 1.8e-07 60.8 286 23.8
Lj4g0018138 Lotus japonicus HOM05D000318 ORTHO05D000420 1.8e-07 60.8 173 27.2
arahy.Tifrunner.gnm1.ann1.8QTZ72 Arachis hypogaea HOM05D000318 ORTHO05D000420 2.4e-07 60.5 291 25.8
C01p08620 Brassica napus HOM05D000318 ORTHO05D000420 3.1e-07 60.1 289 21.5
Ah.03g132420 Amaranthus hybridus HOM05D000318 ORTHO05D017252 4.1e-07 59.7 155 27.7
Carub.0007s1017 Capsella rubella HOM05D000318 ORTHO05D000420 4.1e-07 59.7 261 23.0
CARHR184840 Cardamine hirsuta HOM05D000318 ORTHO05D000420 4.1e-07 59.7 296 24.3
AUR62005312 Chenopodium quinoa HOM05D000318 ORTHO05D017252 4.1e-07 59.7 173 25.4
DCAR_014722 Daucus carota HOM05D000318 ORTHO05D000420 4.1e-07 59.7 275 24.0
HanXRQChr12g0354781 Helianthus annuus HOM05D000318 ORTHO05D000420 4.1e-07 59.7 266 27.1
HanXRQChr14g0457231 Helianthus annuus HOM05D000318 ORTHO05D004588 4.1e-07 59.7 299 23.4
Manes.05G116500 Manihot esculenta HOM05D000318 ORTHO05D000420 4.1e-07 59.7 252 23.4
Nn2g13756 Nelumbo nucifera HOM05D000318 ORTHO05D000420 4.1e-07 59.7 162 25.3
HPP92_019172 Vanilla planifolia HOM05D000318 ORTHO05D037821 4.1e-07 59.7 304 24.0
Glyma.13G328700 Glycine max HOM05D000318 ORTHO05D000420 5.4e-07 59.3 310 24.2
Oeu045650.1 Olea europaea HOM05D000318 ORTHO05D000420 5.4e-07 59.3 219 25.6
SHI03457 Sapria himalayana HOM05D000318 ORTHO05D000420 5.4e-07 59.3 300 21.7
Lalb_Chr02g0141991 Lupinus albus HOM05D000318 ORTHO05D004588 7.0e-07 58.9 260 22.7
Nn2g12555 Nelumbo nucifera HOM05D000318 ORTHO05D000420 7.0e-07 58.9 258 24.4
Oeu039996.1 Olea europaea HOM05D000318 ORTHO05D000420 7.0e-07 58.9 284 24.6
THA.LOC104812119 Tarenaya hassleriana HOM05D000318 ORTHO05D000420 7.0e-07 58.9 265 25.3
THA.LOC104813022 Tarenaya hassleriana HOM05D000318 ORTHO05D004588 7.0e-07 58.9 285 23.9
unitig_0.g565 Utricularia gibba HOM05D000318 ORTHO05D000420 7.0e-07 58.9 172 26.7
Ah.14g084150 Amaranthus hybridus HOM05D000318 ORTHO05D000420 9.1e-07 58.5 280 23.2
arahy.Tifrunner.gnm1.ann1.T23S8A Arachis hypogaea HOM05D000318 ORTHO05D000420 9.1e-07 58.5 245 23.7
ClCG11G012630 Citrullus lanatus HOM05D000318 ORTHO05D000420 9.1e-07 58.5 284 22.2
ECA246G4554 Erigeron canadensis HOM05D000318 ORTHO05D000420 9.1e-07 58.5 262 23.3
Oeu045648.1 Olea europaea HOM05D000318 ORTHO05D000420 9.1e-07 58.5 285 23.9
SalBow6G6013 Salvia bowleyana HOM05D000318 ORTHO05D000420 9.1e-07 58.5 284 23.9
SGA_v2.0_scaffold69G23314 Striga asiatica HOM05D000318 ORTHO05D000420 9.1e-07 58.5 286 23.8
BcaC09g51834 Brassica carinata HOM05D000318 ORTHO05D000420 1.2e-06 58.2 289 21.1
BolC1t00844H Brassica oleracea HOM05D000318 ORTHO05D000420 1.2e-06 58.2 289 21.1
CSS0000509 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D000420 1.2e-06 58.2 291 23.4
CSS0047818 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D000420 1.2e-06 58.2 291 23.4
ClCG06G012830 Citrullus lanatus HOM05D000318 ORTHO05D000420 1.2e-06 58.2 283 24.4
COL.COLO4_12479 Corchorus olitorius HOM05D000318 ORTHO05D000420 1.2e-06 58.2 259 22.8
Oeu007398.1 Olea europaea HOM05D000318 ORTHO05D004588 1.2e-06 58.2 272 23.9
Phvul.009G207500 Phaseolus vulgaris HOM05D000318 ORTHO05D000420 1.2e-06 58.2 283 23.3
SMO364G0326 Selaginella moellendorffii HOM05D000318 ORTHO05D000420 1.2e-06 58.2 274 24.5
CsaV3_1G040310 Cucumis sativus L. HOM05D000318 ORTHO05D000420 1.6e-06 57.8 140 29.3
DCAR_006454 Daucus carota HOM05D000318 ORTHO05D004588 1.6e-06 57.8 306 23.5
Glyma.04G147100 Glycine max HOM05D000318 ORTHO05D000420 1.6e-06 57.8 286 23.4
Gohir.D05G007900 Gossypium hirsutum HOM05D000318 ORTHO05D000420 1.6e-06 57.8 274 24.5
Gorai.007G041000 Gossypium raimondii HOM05D000318 ORTHO05D000420 1.6e-06 57.8 150 26.7
Gorai.009G008000 Gossypium raimondii HOM05D000318 ORTHO05D000420 1.6e-06 57.8 274 24.5
Lsat_1_v5_gn_3_18441 Lactuca sativa HOM05D000318 ORTHO05D000420 1.6e-06 57.8 262 23.3
Lsat_1_v5_gn_5_87760 Lactuca sativa HOM05D000318 ORTHO05D010278 1.6e-06 57.8 140 25.0
RhsimUnG0049500 Rhododendron simsii HOM05D000318 ORTHO05D000420 1.6e-06 57.8 196 26.0
Sc04g0004090 Simmondsia chinensis HOM05D000318 ORTHO05D000420 1.6e-06 57.8 276 23.9
COL.COLO4_17010 Corchorus olitorius HOM05D000318 ORTHO05D000420 2.0e-06 57.4 253 20.6
COL.COLO4_23709 Corchorus olitorius HOM05D000318 ORTHO05D004588 2.0e-06 57.4 305 22.3
MD06G1208400 Malus domestica HOM05D000318 ORTHO05D000420 2.0e-06 57.4 244 22.5
Oeu031855.2 Olea europaea HOM05D000318 ORTHO05D000420 2.0e-06 57.4 286 25.2
RhsimUnG0143900 Rhododendron simsii HOM05D000318 ORTHO05D000420 2.0e-06 57.4 196 26.0
arahy.Tifrunner.gnm1.ann1.A2QH6A Arachis hypogaea HOM05D000318 ORTHO05D000420 2.7e-06 57.0 290 24.5
Cc06_g14110 Coffea canephora HOM05D000318 ORTHO05D000420 2.7e-06 57.0 172 26.2
CsaV3_2G007840 Cucumis sativus L. HOM05D000318 ORTHO05D000420 2.7e-06 57.0 284 22.9
FAN22G2308 Fragaria x ananassa HOM05D000318 ORTHO05D000420 2.7e-06 57.0 270 24.1
Nitab4.5_0002587g0080 Nicotiana tabacum HOM05D000318 ORTHO05D000420 2.7e-06 57.0 276 23.9
Solyc12g010570.1 Solanum lycopersicum HOM05D000318 ORTHO05D000420 2.7e-06 57.0 285 24.6
PGSC0003DMG400007880 Solanum tuberosum HOM05D000318 ORTHO05D000420 2.7e-06 57.0 282 23.8
Thecc.03G113800 Theobroma cacao HOM05D000318 ORTHO05D000420 2.7e-06 57.0 284 24.6
Aqoxy7G02491 Aquilegia oxysepala HOM05D000318 ORTHO05D000420 3.5e-06 56.6 280 23.2
EL10Ac4g08866 Beta vulgaris HOM05D000318 ORTHO05D004588 3.5e-06 56.6 299 23.1
EL10Ac5g11148 Beta vulgaris HOM05D000318 ORTHO05D089101 3.5e-06 56.6 151 28.5
CANSAT11G1150 Cannabis sativa HOM05D000318 ORTHO05D000420 3.5e-06 56.6 269 24.2
CAN.G1190.33 Capsicum annuum HOM05D000318 ORTHO05D000420 3.5e-06 56.6 285 24.2
MELO3C019278.2 Cucumis melo HOM05D000318 ORTHO05D000420 3.5e-06 56.6 128 28.1
Gohir.A05G007000 Gossypium hirsutum HOM05D000318 ORTHO05D000420 3.5e-06 56.6 269 23.4
RcHm_v2.0_Chr1g0363801 Rosa chinensis HOM05D000318 ORTHO05D004588 3.5e-06 56.6 300 23.3
arahy.Tifrunner.gnm1.ann1.Z53AND Arachis hypogaea HOM05D000318 ORTHO05D000420 4.5e-06 56.2 237 24.1
A01p07740 Brassica napus HOM05D000318 ORTHO05D000420 4.5e-06 56.2 273 22.7
BraA01t00717Z Brassica rapa HOM05D000318 ORTHO05D000420 4.5e-06 56.2 273 22.7
MELO3C004104.2 Cucumis melo HOM05D000318 ORTHO05D000420 4.5e-06 56.2 284 22.2
Gohir.A11G034800 Gossypium hirsutum HOM05D000318 ORTHO05D000420 4.5e-06 56.2 162 24.1
unitig_578.g16419 Utricularia gibba HOM05D000318 ORTHO05D000420 4.5e-06 56.2 278 22.7
CiPaw.08G001300 Carya illinoinensis HOM05D000318 ORTHO05D000420 5.9e-06 55.8 279 25.8
Ciclev10028995m.g Citrus clementina HOM05D000318 ORTHO05D000420 5.9e-06 55.8 279 24.7
CsaV3_1G029390 Cucumis sativus L. HOM05D000318 ORTHO05D000420 5.9e-06 55.8 283 23.7
FvH4_7g19800 Fragaria vesca HOM05D000318 ORTHO05D004588 5.9e-06 55.8 298 24.2
FAN01G1124 Fragaria x ananassa HOM05D000318 ORTHO05D004588 5.9e-06 55.8 298 24.2
MBI15_g25686_MAGBIO Magnolia biondii HOM05D000318 ORTHO05D000420 5.9e-06 55.8 282 23.4
Oeu003127.2 Olea europaea HOM05D000318 ORTHO05D004588 5.9e-06 55.8 301 23.3
Oeu058826.1 Olea europaea HOM05D000318 ORTHO05D000420 5.9e-06 55.8 285 24.2
SGA_v2.0_scaffold106G30720 Striga asiatica HOM05D000318 ORTHO05D000420 5.9e-06 55.8 172 25.6
SGA_v2.0_scaffold240G44107 Striga asiatica HOM05D000318 ORTHO05D000420 5.9e-06 55.8 172 25.6
SGA_v2.0_scaffold240G44114 Striga asiatica HOM05D000318 ORTHO05D000420 5.9e-06 55.8 172 25.6
TWI63G0480 Tripterygium wilfordii HOM05D000318 ORTHO05D010278 5.9e-06 55.8 149 24.8
AL7G30050 Arabidopsis lyrata HOM05D000318 ORTHO05D004588 7.7e-06 55.5 253 24.5
MELO3C017269.2 Cucumis melo HOM05D000318 ORTHO05D000420 7.7e-06 55.5 269 23.4
CsaV3_3G049070 Cucumis sativus L. HOM05D000318 ORTHO05D000420 7.7e-06 55.5 271 21.8
FvH4_4g10210 Fragaria vesca HOM05D000318 ORTHO05D000420 7.7e-06 55.5 270 23.7
Glyma.15G207300 Glycine max HOM05D000318 ORTHO05D000420 7.7e-06 55.5 290 24.1
SGA_v2.0_scaffold62G21417 Striga asiatica HOM05D000190 ORTHO05D004588 7.7e-06 55.5 301 22.9


User provided reference genes

Program Settings