Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.1e-87 326.6 162 100.0
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.8e-80 302.0 157 94.3
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 5.1e-66 254.6 156 80.1
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 4.3e-65 251.5 149 81.9
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.4e-60 236.5 158 72.8
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 2.7e-59 232.3 158 72.2
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 5.7e-57 224.6 152 72.4
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 7.9e-51 204.1 132 72.7
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 2.8e-48 195.7 155 62.6
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 4.8e-48 194.9 148 63.5
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.4e-47 193.4 157 60.5
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 5.9e-46 188.0 132 66.7
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 1.9e-44 183.0 157 59.2
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 2.5e-44 182.6 148 60.1
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 1.2e-43 180.3 142 60.6
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 1.2e-43 180.3 133 65.4
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 2.7e-43 179.1 152 56.6
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 6.1e-43 177.9 132 65.9
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.4e-42 176.8 132 65.2
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.4e-42 176.8 149 54.4
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 1.8e-42 176.4 143 58.0
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 8.8e-42 174.1 159 52.8
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 8.8e-42 174.1 161 54.0
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 2.0e-41 172.9 129 64.3
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 3.7e-40 168.7 143 53.8
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 8.2e-40 167.5 145 55.9
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 8.2e-40 167.5 143 53.8
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 6.9e-39 164.5 152 54.6
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.5e-38 163.3 147 57.1
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 1.5e-38 163.3 136 60.3
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 2.0e-38 162.9 143 52.4
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 2.6e-38 162.5 140 55.0
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 3.4e-38 162.2 147 57.8
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 5.9e-38 161.4 148 60.8
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 2.2e-37 159.5 132 57.6
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 2.9e-37 159.1 135 57.0
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 2.9e-37 159.1 147 53.7
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 5.0e-37 158.3 140 55.0
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.1e-36 157.1 120 59.2
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 1.4e-36 156.8 147 53.1
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 1.9e-36 156.4 147 59.2
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.5e-36 156.0 161 49.1
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 2.5e-36 156.0 131 58.0
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 3.2e-36 155.6 154 50.6
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 4.2e-36 155.2 182 52.2
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 4.2e-36 155.2 164 51.2
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 5.5e-36 154.8 132 53.8
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 5.5e-36 154.8 132 53.8
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 7.2e-36 154.5 153 52.3
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 9.4e-36 154.1 140 54.3
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 9.4e-36 154.1 138 52.9
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 2.1e-35 152.9 140 53.6
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 2.1e-35 152.9 157 52.9
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 3.6e-35 152.1 176 47.2
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 3.6e-35 152.1 132 53.0
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 4.7e-35 151.8 161 46.6
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.0e-34 150.6 114 62.3
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 1.8e-34 149.8 127 58.3
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.8e-34 149.8 140 55.7
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 1.8e-34 149.8 127 58.3
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 1.8e-34 149.8 166 47.0
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 2.3e-34 149.4 127 57.5
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.3e-34 149.4 127 57.5
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 3.0e-34 149.1 142 52.1
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 5.1e-34 148.3 142 53.5
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 2.6e-33 146.0 146 50.7
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 5.7e-33 144.8 151 48.3
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.7e-32 143.3 154 48.7
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 2.8e-32 142.5 152 46.7
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 2.8e-32 142.5 156 45.5
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 2.8e-32 142.5 204 42.2
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 6.3e-32 141.4 152 49.3
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 6.3e-32 141.4 152 49.3
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.1e-31 140.6 137 52.6
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 2.4e-31 139.4 154 48.7
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 3.1e-31 139.0 137 48.2
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 9.1e-31 137.5 145 46.9
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 3.5e-30 135.6 132 50.8
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 5.9e-30 134.8 144 45.1
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 1.7e-29 133.3 138 48.6
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 1.7e-29 133.3 128 52.3
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.9e-29 132.5 118 53.4
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 2.9e-29 132.5 149 46.3
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 3.8e-29 132.1 128 50.0
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 5.5e-28 128.3 130 49.2
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.1e-27 126.3 151 43.0
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 2.7e-27 125.9 113 54.9
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 4.7e-27 125.2 128 47.7
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 6.1e-27 124.8 124 46.8
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 8.0e-27 124.4 145 42.8
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 1.0e-26 124.0 126 50.0
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.0e-26 124.0 182 40.7
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 3.0e-26 122.5 133 45.9
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 6.7e-26 121.3 131 49.6
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 3.7e-24 115.5 116 49.1
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 1.1e-23 114.0 116 48.3
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.1e-23 112.5 124 49.2
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 2.7e-22 109.4 100 50.0
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 4.5e-22 108.6 114 48.2
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 4.5e-22 108.6 114 48.2
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 5.9e-22 108.2 100 50.0
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 2.9e-21 105.9 111 46.8
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.2e-19 100.5 78 55.1
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.4e-18 97.1 92 51.1
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 2.6e-17 92.8 158 38.0
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.2e-16 89.7 116 41.4
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 4.8e-16 88.6 103 45.6
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.7e-11 72.8 72 45.8
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 7.5e-09 64.7 82 45.1
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 9.8e-09 64.3 52 59.6
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.7e-08 63.5 140 32.1
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 2.2e-08 63.2 55 54.5
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 8.3e-08 61.2 85 38.8
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 5.4e-07 58.5 59 47.5
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 7.0e-07 58.2 77 44.2
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 1.2e-06 57.4 55 52.7


User provided reference genes

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